organic compounds
N-[4-Acetyl-5-methyl-5-(2-p-tolylpropyl)-4,5-dihydro-1,3,4-thiadiazol-2-yl]acetamide
aLaboratoire de Chimie Biomoléculaires, Substances Naturelles et Réactivité, Faculté des Sciences Semlalia, BP 2390 Bd My Abdellah, 40000 Marrakech, Morocco, bInstituto de Química Física Rocasolano, Consejo Superior de Investigaciones Científicas, Serrano, 119 28002 Madrid, Spain, cLaboratoire des Sciences des Matériaux, Département de Physique, Faculté des Sciences Semlalia, BP 2390 Bd My Abdellah, 40000 Marrakech, Morocco, and dLaboratoire de Chimie Biomoléculaires, Substances Naturelles et Réactivité, Faculté des Sciences Semlalia, BP 2390 Bd My Abdellah, 40000 Marrakech, Morocco
*Correspondence e-mail: mberraho@yahoo.fr
The title heterocyclic compound, C17H23N3O2S, was synthesized from 4-(4-methylcyclohex-3-enyl)pent-3-en-2-one, which was isolated from Cedrus atlantica essential oil. The thiadiazole ring adopts a flattened with the flap sp3-hybridized C atom lying 0.259 (1) Å out of the plane of the other four atoms. The screw-related molecules are linked into chains along the b axis by intermolecular N—H⋯O hydrogen bonds.
Related literature
For 1,3,4-thiadiazole derivatives and their biological activity, see: Beatriz et al. (2002); Loughzail et al. (2009); Mazoir et al. (2008); Mohammed et al. (2008); Nakagawa et al. (1996); Sakthivel et al. (2008); Tehranchian et al. (2005); Wang et al. (1999, 2004). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT-Plus (Bruker, 2005); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia,1997) and PLATON (Spek, 2003); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536809000191/ci2746sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809000191/ci2746Isup2.hkl
A solution of 4-(4-methylcyclohex-3-enyl)pent-3-en-2-one (0.5 g, 2.8 mmol) and Pd/C (10%) was heated at 423 K for 12 h. The product obtained was treated with equimolecular quantity of thiosemicarbazide and several drops of HCl (cc) were added. The reaction mixture was heated at reflux in ethanol for 6 h and then evaporated under reduced pressure and the residue obtained was purified on silica gel column using hexane-ethyl acetate (96:4) as an
0.25 mmol of the thiosemicarbazone obtained was dissolved in 3 ml of pyridine and 3 ml of acetic anhydride. The mixture was heated on a water bath for 1.5 h. The resulting residue was concentrated in vacuo and chromatographied on silica gel column with hexane-ethyl acetate (92:8) as an Suitable crystals were obtained by evaporation of ethyl acetate solution at 277 K.Atoms H4 and H7 were located in a difference map and refined freely (C7—H7 = 0.974 (11) Å and N1—H4 = 0.889 (13) Å). The remaining H atoms were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic), 0.96 Å (methyl), 0.97 Å (methylene), 0.98Å (methine) with Uiso(H) = 1.2Ueq(aromatic, methylene, methine) or Uiso(H) = 1.5Ueq(methyl). The highest residual density peak is located 0.62 Å from atom C2 and the deepest hole is located 0.39 Å from atom H70'.
Data collection: APEX-W2K-NT (Bruker, 2005); cell
SAINT-Plus (Bruker, 2005); data reduction: SAINT-Plus (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia,1997) and PLATON (Spek, 2003); software used to prepare material for publication: WinGX (Farrugia, 1999).C17H23N3O2S | F(000) = 712 |
Mr = 333.44 | Dx = 1.284 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 31976 reflections |
a = 9.3984 (2) Å | θ = 2.2–36.5° |
b = 11.0510 (2) Å | µ = 0.20 mm−1 |
c = 16.6045 (3) Å | T = 298 K |
β = 90.442 (10)° | Prism, colourless |
V = 1724.52 (6) Å3 | 0.5 × 0.4 × 0.3 mm |
Z = 4 |
Bruker X8 APEX CCD area-detector diffractometer | 7182 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.019 |
Graphite monochromator | θmax = 36.8°, θmin = 2.2° |
ϕ and ω scans | h = −14→15 |
52162 measured reflections | k = −18→17 |
8286 independent reflections | l = −27→27 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0594P)2 + 0.2773P] where P = (Fo2 + 2Fc2)/3 |
8286 reflections | (Δ/σ)max = 0.002 |
221 parameters | Δρmax = 0.51 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C17H23N3O2S | V = 1724.52 (6) Å3 |
Mr = 333.44 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.3984 (2) Å | µ = 0.20 mm−1 |
b = 11.0510 (2) Å | T = 298 K |
c = 16.6045 (3) Å | 0.5 × 0.4 × 0.3 mm |
β = 90.442 (10)° |
Bruker X8 APEX CCD area-detector diffractometer | 7182 reflections with I > 2σ(I) |
52162 measured reflections | Rint = 0.019 |
8286 independent reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.51 e Å−3 |
8286 reflections | Δρmin = −0.19 e Å−3 |
221 parameters |
x | y | z | Uiso*/Ueq | ||
C1' | −0.18648 (9) | 0.69929 (8) | 0.22865 (5) | 0.03405 (16) | |
H1' | −0.2631 | 0.7423 | 0.2493 | 0.041* | |
C2' | −0.12028 (8) | 0.74007 (7) | 0.15872 (5) | 0.02883 (13) | |
H2' | −0.1553 | 0.8087 | 0.1329 | 0.035* | |
C2 | 0.40705 (7) | 0.72005 (6) | 0.13520 (4) | 0.02074 (10) | |
C3' | −0.00246 (7) | 0.68003 (6) | 0.12659 (4) | 0.02299 (11) | |
C3 | 0.58917 (7) | 0.58558 (7) | 0.08145 (4) | 0.02531 (12) | |
C4 | 0.67040 (8) | 0.47195 (8) | 0.09881 (5) | 0.03082 (14) | |
H40 | 0.6397 | 0.4094 | 0.0625 | 0.046* | |
H41 | 0.6534 | 0.4471 | 0.1533 | 0.046* | |
H42 | 0.7702 | 0.4865 | 0.0917 | 0.046* | |
C4' | 0.04426 (8) | 0.57608 (7) | 0.16569 (5) | 0.02818 (13) | |
H4' | 0.1221 | 0.5340 | 0.1458 | 0.034* | |
C5 | 0.24444 (7) | 0.89236 (6) | 0.09425 (4) | 0.02261 (11) | |
C5' | −0.02462 (10) | 0.53384 (8) | 0.23496 (5) | 0.03469 (17) | |
H5' | 0.0073 | 0.4631 | 0.2595 | 0.042* | |
C6 | 0.10835 (8) | 0.85717 (6) | 0.04946 (4) | 0.02444 (12) | |
H61 | 0.1172 | 0.8834 | −0.0060 | 0.029* | |
H62 | 0.0302 | 0.9021 | 0.0728 | 0.029* | |
C6' | −0.13955 (10) | 0.59549 (9) | 0.26777 (5) | 0.03553 (17) | |
C7' | −0.21196 (14) | 0.55330 (13) | 0.34392 (6) | 0.0557 (3) | |
H70' | −0.1661 | 0.4813 | 0.3634 | 0.083* | |
H71' | −0.3103 | 0.5363 | 0.3325 | 0.083* | |
H72' | −0.2054 | 0.6155 | 0.3841 | 0.083* | |
C7 | 0.06784 (7) | 0.72237 (6) | 0.04914 (4) | 0.02407 (11) | |
C8 | −0.02971 (10) | 0.69513 (9) | −0.02232 (5) | 0.03593 (17) | |
H80 | 0.0164 | 0.7187 | −0.0713 | 0.054* | |
H81 | −0.1169 | 0.7395 | −0.0168 | 0.054* | |
H82 | −0.0501 | 0.6100 | −0.0239 | 0.054* | |
C9 | 0.27064 (10) | 1.02844 (7) | 0.08864 (5) | 0.03188 (15) | |
H90 | 0.3533 | 1.0493 | 0.1200 | 0.048* | |
H91 | 0.1895 | 1.0711 | 0.1090 | 0.048* | |
H92 | 0.2855 | 1.0505 | 0.0334 | 0.048* | |
C41 | 0.15568 (7) | 0.88983 (6) | 0.23768 (4) | 0.02220 (11) | |
C42 | 0.16402 (9) | 0.82781 (7) | 0.31792 (4) | 0.02797 (13) | |
H420 | 0.1094 | 0.7544 | 0.3161 | 0.042* | |
H421 | 0.1265 | 0.8802 | 0.3587 | 0.042* | |
H422 | 0.2615 | 0.8091 | 0.3304 | 0.042* | |
N1 | 0.49426 (6) | 0.61997 (5) | 0.14026 (3) | 0.02274 (10) | |
N3 | 0.32596 (6) | 0.74595 (5) | 0.19539 (3) | 0.02162 (10) | |
N4 | 0.24397 (6) | 0.84788 (5) | 0.17882 (3) | 0.02167 (10) | |
O1 | 0.60479 (7) | 0.64374 (7) | 0.01970 (4) | 0.03731 (14) | |
O2 | 0.07229 (6) | 0.97409 (5) | 0.22442 (3) | 0.02734 (10) | |
S1 | 0.400452 (18) | 0.813333 (16) | 0.050251 (10) | 0.02473 (5) | |
H4 | 0.4838 (13) | 0.5774 (12) | 0.1853 (8) | 0.036 (3)* | |
H7 | 0.1540 (12) | 0.6750 (10) | 0.0411 (7) | 0.028 (3)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1' | 0.0346 (4) | 0.0368 (4) | 0.0309 (3) | −0.0069 (3) | 0.0063 (3) | −0.0080 (3) |
C2' | 0.0302 (3) | 0.0267 (3) | 0.0297 (3) | 0.0019 (2) | 0.0030 (2) | −0.0024 (2) |
C2 | 0.0225 (2) | 0.0212 (2) | 0.0185 (2) | −0.00085 (19) | −0.00014 (18) | 0.00030 (19) |
C3' | 0.0255 (3) | 0.0214 (3) | 0.0220 (3) | 0.0002 (2) | −0.0027 (2) | −0.00210 (19) |
C3 | 0.0203 (2) | 0.0334 (3) | 0.0222 (3) | 0.0008 (2) | 0.00024 (19) | −0.0032 (2) |
C4 | 0.0255 (3) | 0.0331 (3) | 0.0338 (3) | 0.0052 (2) | −0.0005 (2) | −0.0081 (3) |
C4' | 0.0296 (3) | 0.0246 (3) | 0.0303 (3) | −0.0003 (2) | −0.0072 (2) | 0.0011 (2) |
C5 | 0.0293 (3) | 0.0197 (2) | 0.0188 (2) | 0.0009 (2) | −0.0005 (2) | 0.00177 (19) |
C5' | 0.0396 (4) | 0.0325 (4) | 0.0318 (3) | −0.0098 (3) | −0.0116 (3) | 0.0077 (3) |
C6 | 0.0289 (3) | 0.0245 (3) | 0.0199 (2) | 0.0025 (2) | −0.0023 (2) | 0.0024 (2) |
C6' | 0.0407 (4) | 0.0420 (4) | 0.0238 (3) | −0.0185 (3) | −0.0029 (3) | −0.0004 (3) |
C7' | 0.0633 (7) | 0.0724 (8) | 0.0313 (4) | −0.0341 (6) | 0.0034 (4) | 0.0054 (5) |
C7 | 0.0264 (3) | 0.0251 (3) | 0.0207 (2) | 0.0018 (2) | −0.0016 (2) | −0.0032 (2) |
C8 | 0.0402 (4) | 0.0437 (4) | 0.0238 (3) | −0.0051 (3) | −0.0066 (3) | −0.0053 (3) |
C9 | 0.0445 (4) | 0.0202 (3) | 0.0310 (3) | −0.0016 (3) | −0.0006 (3) | 0.0036 (2) |
C41 | 0.0276 (3) | 0.0205 (2) | 0.0185 (2) | 0.0008 (2) | −0.00094 (19) | −0.00301 (19) |
C42 | 0.0367 (3) | 0.0281 (3) | 0.0191 (3) | 0.0049 (3) | 0.0014 (2) | 0.0006 (2) |
N1 | 0.0240 (2) | 0.0233 (2) | 0.0209 (2) | 0.00241 (18) | 0.00268 (17) | 0.00121 (18) |
N3 | 0.0262 (2) | 0.0202 (2) | 0.0184 (2) | 0.00288 (18) | 0.00029 (17) | 0.00064 (17) |
N4 | 0.0281 (2) | 0.0199 (2) | 0.0171 (2) | 0.00304 (18) | −0.00031 (17) | 0.00020 (16) |
O1 | 0.0321 (3) | 0.0550 (4) | 0.0249 (2) | 0.0069 (3) | 0.0068 (2) | 0.0066 (2) |
O2 | 0.0344 (3) | 0.0233 (2) | 0.0244 (2) | 0.00714 (18) | −0.00082 (18) | −0.00255 (17) |
S1 | 0.02737 (8) | 0.02713 (9) | 0.01972 (8) | 0.00035 (5) | 0.00253 (5) | 0.00433 (5) |
C1'—C6' | 1.3886 (14) | C6—C7 | 1.5375 (10) |
C1'—C2' | 1.3963 (12) | C6—H61 | 0.97 |
C1'—H1' | 0.93 | C6—H62 | 0.97 |
C2'—C3' | 1.4001 (10) | C6'—C7' | 1.5142 (13) |
C2'—H2' | 0.93 | C7'—H70' | 0.96 |
C2—N3 | 1.2936 (8) | C7'—H71' | 0.96 |
C2—N1 | 1.3788 (9) | C7'—H72' | 0.96 |
C2—S1 | 1.7478 (6) | C7—C8 | 1.5240 (10) |
C3'—C4' | 1.3891 (10) | C7—H7 | 0.974 (11) |
C3'—C7 | 1.5239 (10) | C8—H80 | 0.96 |
C3—O1 | 1.2199 (9) | C8—H81 | 0.96 |
C3—N1 | 1.3810 (9) | C8—H82 | 0.96 |
C3—C4 | 1.4966 (11) | C9—H90 | 0.96 |
C4—H40 | 0.96 | C9—H91 | 0.96 |
C4—H41 | 0.96 | C9—H92 | 0.96 |
C4—H42 | 0.96 | C41—O2 | 1.2357 (8) |
C4'—C5' | 1.4040 (12) | C41—N4 | 1.3679 (8) |
C4'—H4' | 0.93 | C41—C42 | 1.4998 (10) |
C5—N4 | 1.4878 (8) | C42—H420 | 0.96 |
C5—C6 | 1.5250 (10) | C42—H421 | 0.96 |
C5—C9 | 1.5267 (10) | C42—H422 | 0.96 |
C5—S1 | 1.8609 (7) | N1—H4 | 0.889 (13) |
C5'—C6' | 1.3916 (14) | N3—N4 | 1.3911 (8) |
C5'—H5' | 0.93 | ||
C6'—C1'—C2' | 120.90 (8) | C6'—C7'—H70' | 109.5 |
C6'—C1'—H1' | 119.5 | C6'—C7'—H71' | 109.5 |
C2'—C1'—H1' | 119.5 | H70'—C7'—H71' | 109.5 |
C1'—C2'—C3' | 121.52 (7) | C6'—C7'—H72' | 109.5 |
C1'—C2'—H2' | 119.2 | H70'—C7'—H72' | 109.5 |
C3'—C2'—H2' | 119.2 | H71'—C7'—H72' | 109.5 |
N3—C2—N1 | 118.94 (6) | C3'—C7—C8 | 109.53 (6) |
N3—C2—S1 | 118.40 (5) | C3'—C7—C6 | 113.80 (5) |
N1—C2—S1 | 122.66 (5) | C8—C7—C6 | 109.97 (6) |
C4'—C3'—C2' | 117.51 (7) | C3'—C7—H7 | 108.5 (7) |
C4'—C3'—C7 | 120.72 (6) | C8—C7—H7 | 106.4 (7) |
C2'—C3'—C7 | 121.70 (6) | C6—C7—H7 | 108.3 (7) |
O1—C3—N1 | 122.14 (7) | C7—C8—H80 | 109.5 |
O1—C3—C4 | 122.65 (7) | C7—C8—H81 | 109.5 |
N1—C3—C4 | 115.21 (6) | H80—C8—H81 | 109.5 |
C3—C4—H40 | 109.5 | C7—C8—H82 | 109.5 |
C3—C4—H41 | 109.5 | H80—C8—H82 | 109.5 |
H40—C4—H41 | 109.5 | H81—C8—H82 | 109.5 |
C3—C4—H42 | 109.5 | C5—C9—H90 | 109.5 |
H40—C4—H42 | 109.5 | C5—C9—H91 | 109.5 |
H41—C4—H42 | 109.5 | H90—C9—H91 | 109.5 |
C3'—C4'—C5' | 120.78 (8) | C5—C9—H92 | 109.5 |
C3'—C4'—H4' | 119.6 | H90—C9—H92 | 109.5 |
C5'—C4'—H4' | 119.6 | H91—C9—H92 | 109.5 |
N4—C5—C6 | 111.56 (5) | O2—C41—N4 | 121.03 (6) |
N4—C5—C9 | 112.62 (6) | O2—C41—C42 | 122.10 (6) |
C6—C5—C9 | 110.89 (6) | N4—C41—C42 | 116.87 (6) |
N4—C5—S1 | 102.92 (4) | C41—C42—H420 | 109.5 |
C6—C5—S1 | 110.44 (5) | C41—C42—H421 | 109.5 |
C9—C5—S1 | 108.08 (5) | H420—C42—H421 | 109.5 |
C6'—C5'—C4' | 121.47 (8) | C41—C42—H422 | 109.5 |
C6'—C5'—H5' | 119.3 | H420—C42—H422 | 109.5 |
C4'—C5'—H5' | 119.3 | H421—C42—H422 | 109.5 |
C5—C6—C7 | 117.10 (5) | C2—N1—C3 | 124.37 (6) |
C5—C6—H61 | 108.0 | C2—N1—H4 | 113.9 (8) |
C7—C6—H61 | 108.0 | C3—N1—H4 | 121.7 (8) |
C5—C6—H62 | 108.0 | C2—N3—N4 | 110.79 (5) |
C7—C6—H62 | 108.0 | C41—N4—N3 | 118.12 (5) |
H61—C6—H62 | 107.3 | C41—N4—C5 | 124.65 (5) |
C1'—C6'—C5' | 117.78 (7) | N3—N4—C5 | 116.65 (5) |
C1'—C6'—C7' | 120.12 (10) | C2—S1—C5 | 89.03 (3) |
C5'—C6'—C7' | 122.10 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H4···O2i | 0.89 (1) | 1.96 (1) | 2.8391 (7) | 169 (1) |
Symmetry code: (i) −x+1/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C17H23N3O2S |
Mr | 333.44 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 9.3984 (2), 11.0510 (2), 16.6045 (3) |
β (°) | 90.442 (10) |
V (Å3) | 1724.52 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.5 × 0.4 × 0.3 |
Data collection | |
Diffractometer | Bruker X8 APEX CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 52162, 8286, 7182 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.842 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.108, 1.03 |
No. of reflections | 8286 |
No. of parameters | 221 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.51, −0.19 |
Computer programs: APEX-W2K-NT (Bruker, 2005), SAINT-Plus (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia,1997) and PLATON (Spek, 2003), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H4···O2i | 0.89 (1) | 1.96 (1) | 2.8391 (7) | 169 (1) |
Symmetry code: (i) −x+1/2, y−1/2, −z+1/2. |
Acknowledgements
The authors thank Professor J. C. Daran for fruitful discussions.
References
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1,3,4-Thiadiazole derivatives (Sakthivel et al., 2008) represent an interesting class of compounds possessing diverses activities: biological (Nakagawa et al., 1996), fungicidal (Wang et al., 1999, 2004) and bactericidal properties (Tehranchian et al., 2005). The work of our research group focused on the phytochemical study of Moroccan plants and aimed to find out new compounds, which could be used as precursors or intermediates for the synthesis of high added value specimens (Mazoir et al., 2008; Loughzail et al.,2009). In this way, we have investigated native Cedrus species rich on sesquiterpene derivatives. Thus a new compound was obtained through chemical modification of 4-(4-methylcyclohex-3-enyl)pent-3-en-2-one, which was isolated from Cedrus Atlantica essential oil. The aromatization of the above compound followed by condensation with thiosemicarbazide (Beatriz et al., 2002; Mohammed et al., 2008) ending with treatment of acetic anhydride in the presence of pyridine yielded a diasterioisomers in high stereoselectivity.
The molecular structure of the title compound is shown in Fig. 1. The thiadiazole ring adopts a flattened envelop conformation as indicated by Cremer & Pople (1975) puckering parameters Q = 0.1578 (6) Å and ϕ = 148.3 (2)°. Atom C5 deviates from the mean plane through other four atoms in the ring by 0.259 (1) Å.
In the crystal structure, molecules are linked into chains (Fig. 2) running along the b axis by intermolecular N—H···O hydrogen bonds (Table 1) involving the carbonyl and the acetamide groups.