organic compounds
tert-Butyl 3-[N-(tert-butoxycarbonyl)methylamino]-4-methoxyimino-3-methylpiperidine-1-carboxylate
aInstitute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, People's Republic of China
*Correspondence e-mail: lmllyx@yahoo.com.cn
The title compound, C18H33N3O5, was prepared from N-tert-butoxycarbonyl-4-piperidone using a nine-step reaction, including condensation, methylation, oximation, hydrolysis, esterification, ammonolysis, Hoffmann degradation, tert-butoxycarbonyl protection and methylation. The E configuration of the methyloxime geometry of the compound is confirmed.
Related literature
For the synthesis and properties of quinolone derivatives, see: Anderson & Osheroff (2001); Ball et al. (1998); Hong et al. (1997); Ray et al. (2005); Wang et al. (2008).
Experimental
Crystal data
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536808044255/rk2125sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536808044255/rk2125Isup2.hkl
To a stirring solution of 1-N-tert-Butoxycarbonyl-3-(N-tert-butoxycarbonyl) amino-4-methoxyimino-3-methylpiperidine(2.4 g, 6.7 mmol) in dry tetrahydrofuran (40 ml) was added 70% sodium hydride (0.46 g, 13.4 mmol) at 273 K using an ice bath, and then stirred for 0.5 h at the room temperature. After addition of methyl iodide (0.84 ml, 13.4 mol), the reaction mixture was stirred at 313 K for 5 h and cooled to room temperature, adjusted to pH 7 with 1N HCl and then concentrated under reduced pressure. The residue was diluted with ethyl acetate (50 ml), washed with distilled water, dried over anhydrous sodium sulfate, and filtered. The filtrate was concentrated under reduced pressure, dried in vacuo to give the title compound as a white solid (2.37 g, 95.0%; mp: 380–382 K). Single crystals suitable for X–ray analysis were obtained by slow evaporation of a methanol/water solution (5:1 v/v). 1H NMR (CDCl3, δ): 1.34 (s, 3H, CH3), 1.41 (s, 9H, BOC), 1.46 (s, 9H, BOC), 2.24–2.25 (m, 1H, piperidine), 2.87–2.88 (m, 1H, piperidine), 2.91 (s, 3H, NCH3), 2.95–3.08 (m, 2H, piperidine), 3.82 (s, 3H, OCH3), 3.84–3.86 (m, 1H, piperidine), 4.30–4.31 (m, 1H, piperidine); MS (ESI, m/z): 372.2 m/z (M+1)+.
All H atoms were placed at calculated positions, with C—H = 0.96–0.97 Å, and included in the final cycles of
using a riding model, with Uiso(H) = 1.2Ueq(C) for methylene or 1.5Ueq(C) for methyl H atoms.Data collection: SMART (Bruker, 1998); cell
SMART (Bruker, 1998); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C18H33N3O5 | F(000) = 1616 |
Mr = 371.47 | Dx = 1.180 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1707 reflections |
a = 28.867 (3) Å | θ = 2.7–21.1° |
b = 6.1887 (13) Å | µ = 0.09 mm−1 |
c = 25.379 (3) Å | T = 298 K |
β = 112.769 (2)° | Prism, colourless |
V = 4180.6 (11) Å3 | 0.40 × 0.20 × 0.11 mm |
Z = 8 |
Bruker SMART CCD area-detector diffractometer | 3699 independent reflections |
Radiation source: Fine–focus sealed tube | 1915 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.060 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −33→34 |
Tmin = 0.963, Tmax = 0.991 | k = −7→6 |
10032 measured reflections | l = −30→23 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.144 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.058P)2 + 0.3657P] where P = (Fo2 + 2Fc2)/3 |
3699 reflections | (Δ/σ)max = 0.001 |
244 parameters | Δρmax = 0.23 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C18H33N3O5 | V = 4180.6 (11) Å3 |
Mr = 371.47 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 28.867 (3) Å | µ = 0.09 mm−1 |
b = 6.1887 (13) Å | T = 298 K |
c = 25.379 (3) Å | 0.40 × 0.20 × 0.11 mm |
β = 112.769 (2)° |
Bruker SMART CCD area-detector diffractometer | 3699 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1915 reflections with I > 2σ(I) |
Tmin = 0.963, Tmax = 0.991 | Rint = 0.060 |
10032 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.144 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.23 e Å−3 |
3699 reflections | Δρmin = −0.22 e Å−3 |
244 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.18007 (8) | 0.2543 (3) | 0.60235 (9) | 0.0389 (6) | |
N2 | 0.07900 (7) | 0.1687 (4) | 0.51326 (9) | 0.0367 (6) | |
N3 | 0.16321 (7) | −0.1321 (4) | 0.47432 (9) | 0.0382 (6) | |
O1 | 0.16324 (7) | 0.3113 (3) | 0.67977 (7) | 0.0496 (5) | |
O2 | 0.21149 (7) | 0.5507 (3) | 0.65653 (8) | 0.0554 (6) | |
O3 | 0.07112 (6) | 0.1423 (3) | 0.42229 (7) | 0.0525 (6) | |
O4 | 0.01093 (7) | 0.3134 (3) | 0.44214 (8) | 0.0607 (6) | |
O5 | 0.19807 (6) | −0.0836 (3) | 0.44880 (7) | 0.0452 (5) | |
C1 | 0.15544 (9) | 0.0442 (4) | 0.59370 (10) | 0.0374 (7) | |
H1A | 0.1361 | 0.0344 | 0.6175 | 0.045* | |
H1B | 0.1809 | −0.0681 | 0.6057 | 0.045* | |
C2 | 0.12010 (9) | 0.0043 (4) | 0.53070 (10) | 0.0335 (6) | |
C3 | 0.15423 (9) | 0.0354 (4) | 0.49846 (10) | 0.0325 (6) | |
C4 | 0.17891 (10) | 0.2510 (4) | 0.50509 (11) | 0.0387 (7) | |
H4A | 0.1536 | 0.3625 | 0.4899 | 0.046* | |
H4B | 0.2006 | 0.2542 | 0.4839 | 0.046* | |
C5 | 0.20975 (10) | 0.2938 (5) | 0.56825 (11) | 0.0459 (8) | |
H5A | 0.2390 | 0.2005 | 0.5813 | 0.055* | |
H5B | 0.2213 | 0.4425 | 0.5732 | 0.055* | |
C6 | 0.18713 (10) | 0.3856 (5) | 0.64739 (11) | 0.0399 (7) | |
C7 | 0.15940 (11) | 0.4430 (5) | 0.72637 (12) | 0.0495 (8) | |
C8 | 0.21026 (13) | 0.4764 (6) | 0.77309 (13) | 0.0738 (11) | |
H8A | 0.2261 | 0.3388 | 0.7856 | 0.111* | |
H8B | 0.2066 | 0.5494 | 0.8046 | 0.111* | |
H8C | 0.2306 | 0.5623 | 0.7589 | 0.111* | |
C9 | 0.13357 (14) | 0.6544 (6) | 0.70277 (15) | 0.0871 (13) | |
H9A | 0.1561 | 0.7461 | 0.6934 | 0.131* | |
H9B | 0.1241 | 0.7241 | 0.7309 | 0.131* | |
H9C | 0.1041 | 0.6272 | 0.6690 | 0.131* | |
C10 | 0.12728 (14) | 0.3024 (6) | 0.74676 (14) | 0.0903 (13) | |
H10A | 0.0957 | 0.2762 | 0.7158 | 0.135* | |
H10B | 0.1216 | 0.3738 | 0.7773 | 0.135* | |
H10C | 0.1441 | 0.1674 | 0.7603 | 0.135* | |
C11 | 0.09808 (10) | −0.2224 (4) | 0.52538 (12) | 0.0432 (7) | |
H11A | 0.0769 | −0.2306 | 0.5466 | 0.065* | |
H11B | 0.1248 | −0.3256 | 0.5403 | 0.065* | |
H11C | 0.0786 | −0.2537 | 0.4859 | 0.065* | |
C12 | 0.05026 (10) | 0.2153 (5) | 0.45784 (12) | 0.0417 (7) | |
C13 | 0.05602 (10) | 0.2229 (5) | 0.55381 (11) | 0.0492 (8) | |
H13A | 0.0295 | 0.3257 | 0.5367 | 0.074* | |
H13B | 0.0810 | 0.2841 | 0.5877 | 0.074* | |
H13C | 0.0425 | 0.0944 | 0.5636 | 0.074* | |
C14 | 0.04913 (11) | 0.1885 (6) | 0.36115 (12) | 0.0584 (9) | |
C15 | 0.04440 (16) | 0.4286 (7) | 0.35091 (17) | 0.1048 (14) | |
H15A | 0.0185 | 0.4844 | 0.3620 | 0.157* | |
H15B | 0.0360 | 0.4573 | 0.3111 | 0.157* | |
H15C | 0.0757 | 0.4972 | 0.3731 | 0.157* | |
C17 | 0.08735 (13) | 0.0915 (7) | 0.34093 (13) | 0.0907 (13) | |
H17A | 0.1198 | 0.1530 | 0.3622 | 0.136* | |
H17B | 0.0779 | 0.1217 | 0.3010 | 0.136* | |
H17C | 0.0887 | −0.0621 | 0.3467 | 0.136* | |
C16 | −0.00059 (12) | 0.0715 (7) | 0.33491 (14) | 0.0906 (13) | |
H16A | 0.0039 | −0.0778 | 0.3460 | 0.136* | |
H16B | −0.0129 | 0.0822 | 0.2940 | 0.136* | |
H16C | −0.0244 | 0.1360 | 0.3481 | 0.136* | |
C18 | 0.20473 (11) | −0.2741 (5) | 0.42114 (13) | 0.0557 (9) | |
H18A | 0.2217 | −0.3815 | 0.4493 | 0.083* | |
H18B | 0.2245 | −0.2411 | 0.3992 | 0.083* | |
H18C | 0.1725 | −0.3283 | 0.3962 | 0.083* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0452 (13) | 0.0367 (15) | 0.0395 (13) | −0.0085 (11) | 0.0215 (11) | −0.0060 (12) |
N2 | 0.0359 (12) | 0.0426 (15) | 0.0368 (13) | 0.0076 (11) | 0.0198 (11) | 0.0002 (11) |
N3 | 0.0368 (12) | 0.0427 (15) | 0.0420 (13) | 0.0011 (11) | 0.0226 (11) | −0.0024 (12) |
O1 | 0.0665 (13) | 0.0501 (13) | 0.0394 (11) | −0.0098 (11) | 0.0284 (10) | −0.0081 (10) |
O2 | 0.0687 (14) | 0.0486 (14) | 0.0528 (13) | −0.0193 (12) | 0.0277 (11) | −0.0143 (11) |
O3 | 0.0471 (11) | 0.0771 (16) | 0.0335 (11) | 0.0188 (11) | 0.0157 (9) | 0.0062 (11) |
O4 | 0.0469 (12) | 0.0716 (16) | 0.0619 (14) | 0.0252 (12) | 0.0193 (10) | 0.0080 (12) |
O5 | 0.0509 (11) | 0.0453 (13) | 0.0538 (12) | −0.0003 (10) | 0.0360 (10) | −0.0070 (10) |
C1 | 0.0438 (16) | 0.0357 (18) | 0.0371 (16) | −0.0012 (14) | 0.0203 (13) | −0.0006 (13) |
C2 | 0.0361 (15) | 0.0331 (17) | 0.0349 (15) | 0.0017 (13) | 0.0178 (12) | 0.0011 (13) |
C3 | 0.0314 (14) | 0.0359 (17) | 0.0331 (15) | 0.0034 (13) | 0.0155 (12) | 0.0006 (13) |
C4 | 0.0451 (16) | 0.0350 (17) | 0.0442 (17) | −0.0010 (14) | 0.0264 (13) | −0.0012 (14) |
C5 | 0.0468 (17) | 0.0457 (19) | 0.0510 (18) | −0.0088 (15) | 0.0254 (15) | −0.0077 (15) |
C6 | 0.0454 (17) | 0.0398 (19) | 0.0361 (16) | 0.0002 (15) | 0.0174 (14) | −0.0027 (15) |
C7 | 0.066 (2) | 0.050 (2) | 0.0392 (17) | 0.0003 (17) | 0.0280 (16) | −0.0052 (16) |
C8 | 0.090 (3) | 0.084 (3) | 0.0401 (18) | 0.001 (2) | 0.0172 (19) | −0.0105 (19) |
C9 | 0.110 (3) | 0.089 (3) | 0.074 (3) | 0.044 (3) | 0.049 (2) | 0.007 (2) |
C10 | 0.127 (3) | 0.099 (3) | 0.071 (2) | −0.034 (3) | 0.066 (2) | −0.023 (2) |
C11 | 0.0486 (16) | 0.0375 (18) | 0.0494 (17) | −0.0058 (14) | 0.0252 (14) | −0.0037 (15) |
C12 | 0.0406 (17) | 0.0440 (19) | 0.0439 (18) | 0.0051 (15) | 0.0201 (14) | 0.0005 (15) |
C13 | 0.0461 (17) | 0.058 (2) | 0.0512 (18) | 0.0062 (15) | 0.0276 (15) | −0.0066 (16) |
C14 | 0.054 (2) | 0.082 (3) | 0.0373 (17) | 0.0154 (19) | 0.0156 (15) | 0.0125 (18) |
C15 | 0.120 (3) | 0.109 (4) | 0.092 (3) | 0.012 (3) | 0.048 (3) | 0.044 (3) |
C17 | 0.079 (2) | 0.151 (4) | 0.046 (2) | 0.030 (3) | 0.0297 (19) | 0.010 (2) |
C16 | 0.072 (3) | 0.130 (4) | 0.057 (2) | 0.002 (3) | 0.0116 (19) | −0.011 (2) |
C18 | 0.065 (2) | 0.052 (2) | 0.065 (2) | −0.0031 (17) | 0.0409 (17) | −0.0190 (17) |
N1—C6 | 1.352 (3) | C8—H8B | 0.9600 |
N1—C5 | 1.455 (3) | C8—H8C | 0.9600 |
N1—C1 | 1.457 (3) | C9—H9A | 0.9600 |
N2—C12 | 1.359 (3) | C9—H9B | 0.9600 |
N2—C13 | 1.463 (3) | C9—H9C | 0.9600 |
N2—C2 | 1.494 (3) | C10—H10A | 0.9600 |
N3—C3 | 1.280 (3) | C10—H10B | 0.9600 |
N3—O5 | 1.423 (2) | C10—H10C | 0.9600 |
O1—C6 | 1.342 (3) | C11—H11A | 0.9600 |
O1—C7 | 1.476 (3) | C11—H11B | 0.9600 |
O2—C6 | 1.210 (3) | C11—H11C | 0.9600 |
O3—C12 | 1.342 (3) | C13—H13A | 0.9600 |
O3—C14 | 1.459 (3) | C13—H13B | 0.9600 |
O4—C12 | 1.211 (3) | C13—H13C | 0.9600 |
O5—C18 | 1.423 (3) | C14—C15 | 1.505 (5) |
C1—C2 | 1.548 (3) | C14—C17 | 1.510 (4) |
C1—H1A | 0.9700 | C14—C16 | 1.513 (4) |
C1—H1B | 0.9700 | C15—H15A | 0.9600 |
C2—C3 | 1.517 (3) | C15—H15B | 0.9600 |
C2—C11 | 1.525 (3) | C15—H15C | 0.9600 |
C3—C4 | 1.491 (3) | C17—H17A | 0.9600 |
C4—C5 | 1.525 (3) | C17—H17B | 0.9600 |
C4—H4A | 0.9700 | C17—H17C | 0.9600 |
C4—H4B | 0.9700 | C16—H16A | 0.9600 |
C5—H5A | 0.9700 | C16—H16B | 0.9600 |
C5—H5B | 0.9700 | C16—H16C | 0.9600 |
C7—C8 | 1.502 (4) | C18—H18A | 0.9600 |
C7—C10 | 1.502 (4) | C18—H18B | 0.9600 |
C7—C9 | 1.510 (4) | C18—H18C | 0.9600 |
C8—H8A | 0.9600 | ||
C6—N1—C5 | 118.1 (2) | C7—C9—H9C | 109.5 |
C6—N1—C1 | 124.7 (2) | H9A—C9—H9C | 109.5 |
C5—N1—C1 | 115.2 (2) | H9B—C9—H9C | 109.5 |
C12—N2—C13 | 114.7 (2) | C7—C10—H10A | 109.5 |
C12—N2—C2 | 123.2 (2) | C7—C10—H10B | 109.5 |
C13—N2—C2 | 118.2 (2) | H10A—C10—H10B | 109.5 |
C3—N3—O5 | 110.9 (2) | C7—C10—H10C | 109.5 |
C6—O1—C7 | 121.1 (2) | H10A—C10—H10C | 109.5 |
C12—O3—C14 | 121.7 (2) | H10B—C10—H10C | 109.5 |
C18—O5—N3 | 107.7 (2) | C2—C11—H11A | 109.5 |
N1—C1—C2 | 112.7 (2) | C2—C11—H11B | 109.5 |
N1—C1—H1A | 109.1 | H11A—C11—H11B | 109.5 |
C2—C1—H1A | 109.1 | C2—C11—H11C | 109.5 |
N1—C1—H1B | 109.1 | H11A—C11—H11C | 109.5 |
C2—C1—H1B | 109.1 | H11B—C11—H11C | 109.5 |
H1A—C1—H1B | 107.8 | O4—C12—O3 | 123.7 (3) |
N2—C2—C3 | 111.2 (2) | O4—C12—N2 | 124.5 (3) |
N2—C2—C11 | 110.1 (2) | O3—C12—N2 | 111.8 (2) |
C3—C2—C11 | 113.9 (2) | N2—C13—H13A | 109.5 |
N2—C2—C1 | 109.1 (2) | N2—C13—H13B | 109.5 |
C3—C2—C1 | 103.36 (19) | H13A—C13—H13B | 109.5 |
C11—C2—C1 | 108.9 (2) | N2—C13—H13C | 109.5 |
N3—C3—C4 | 127.0 (2) | H13A—C13—H13C | 109.5 |
N3—C3—C2 | 116.7 (2) | H13B—C13—H13C | 109.5 |
C4—C3—C2 | 115.7 (2) | O3—C14—C15 | 110.5 (3) |
C3—C4—C5 | 109.4 (2) | O3—C14—C17 | 102.1 (2) |
C3—C4—H4A | 109.8 | C15—C14—C17 | 111.3 (3) |
C5—C4—H4A | 109.8 | O3—C14—C16 | 108.8 (3) |
C3—C4—H4B | 109.8 | C15—C14—C16 | 112.9 (3) |
C5—C4—H4B | 109.8 | C17—C14—C16 | 110.7 (3) |
H4A—C4—H4B | 108.2 | C14—C15—H15A | 109.5 |
N1—C5—C4 | 110.9 (2) | C14—C15—H15B | 109.5 |
N1—C5—H5A | 109.5 | H15A—C15—H15B | 109.5 |
C4—C5—H5A | 109.5 | C14—C15—H15C | 109.5 |
N1—C5—H5B | 109.5 | H15A—C15—H15C | 109.5 |
C4—C5—H5B | 109.5 | H15B—C15—H15C | 109.5 |
H5A—C5—H5B | 108.0 | C14—C17—H17A | 109.5 |
O2—C6—O1 | 124.7 (3) | C14—C17—H17B | 109.5 |
O2—C6—N1 | 123.8 (3) | H17A—C17—H17B | 109.5 |
O1—C6—N1 | 111.5 (3) | C14—C17—H17C | 109.5 |
O1—C7—C8 | 110.8 (2) | H17A—C17—H17C | 109.5 |
O1—C7—C10 | 101.8 (2) | H17B—C17—H17C | 109.5 |
C8—C7—C10 | 110.7 (3) | C14—C16—H16A | 109.5 |
O1—C7—C9 | 109.8 (2) | C14—C16—H16B | 109.5 |
C8—C7—C9 | 112.1 (3) | H16A—C16—H16B | 109.5 |
C10—C7—C9 | 111.3 (3) | C14—C16—H16C | 109.5 |
C7—C8—H8A | 109.5 | H16A—C16—H16C | 109.5 |
C7—C8—H8B | 109.5 | H16B—C16—H16C | 109.5 |
H8A—C8—H8B | 109.5 | O5—C18—H18A | 109.5 |
C7—C8—H8C | 109.5 | O5—C18—H18B | 109.5 |
H8A—C8—H8C | 109.5 | H18A—C18—H18B | 109.5 |
H8B—C8—H8C | 109.5 | O5—C18—H18C | 109.5 |
C7—C9—H9A | 109.5 | H18A—C18—H18C | 109.5 |
C7—C9—H9B | 109.5 | H18B—C18—H18C | 109.5 |
H9A—C9—H9B | 109.5 | ||
C3—N3—O5—C18 | −177.9 (2) | C6—N1—C5—C4 | −143.2 (2) |
C6—N1—C1—C2 | 139.0 (2) | C1—N1—C5—C4 | 52.3 (3) |
C5—N1—C1—C2 | −57.6 (3) | C3—C4—C5—N1 | −49.9 (3) |
C12—N2—C2—C3 | 48.3 (3) | C7—O1—C6—O2 | 8.0 (4) |
C13—N2—C2—C3 | −155.2 (2) | C7—O1—C6—N1 | −171.1 (2) |
C12—N2—C2—C11 | −78.9 (3) | C5—N1—C6—O2 | 10.3 (4) |
C13—N2—C2—C11 | 77.7 (3) | C1—N1—C6—O2 | 173.3 (3) |
C12—N2—C2—C1 | 161.6 (2) | C5—N1—C6—O1 | −170.6 (2) |
C13—N2—C2—C1 | −41.8 (3) | C1—N1—C6—O1 | −7.6 (4) |
N1—C1—C2—N2 | −62.4 (3) | C6—O1—C7—C8 | −66.1 (3) |
N1—C1—C2—C3 | 56.0 (3) | C6—O1—C7—C10 | 176.2 (3) |
N1—C1—C2—C11 | 177.4 (2) | C6—O1—C7—C9 | 58.3 (3) |
O5—N3—C3—C4 | −5.2 (3) | C14—O3—C12—O4 | 4.0 (4) |
O5—N3—C3—C2 | −176.31 (19) | C14—O3—C12—N2 | −175.0 (2) |
N2—C2—C3—N3 | −129.7 (2) | C13—N2—C12—O4 | 7.3 (4) |
C11—C2—C3—N3 | −4.6 (3) | C2—N2—C12—O4 | 164.6 (3) |
C1—C2—C3—N3 | 113.4 (2) | C13—N2—C12—O3 | −173.7 (2) |
N2—C2—C3—C4 | 58.2 (3) | C2—N2—C12—O3 | −16.5 (4) |
C11—C2—C3—C4 | −176.7 (2) | C12—O3—C14—C15 | 57.0 (4) |
C1—C2—C3—C4 | −58.8 (3) | C12—O3—C14—C17 | 175.5 (3) |
N3—C3—C4—C5 | −113.4 (3) | C12—O3—C14—C16 | −67.5 (4) |
C2—C3—C4—C5 | 57.8 (3) |
Experimental details
Crystal data | |
Chemical formula | C18H33N3O5 |
Mr | 371.47 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 298 |
a, b, c (Å) | 28.867 (3), 6.1887 (13), 25.379 (3) |
β (°) | 112.769 (2) |
V (Å3) | 4180.6 (11) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.20 × 0.11 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.963, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10032, 3699, 1915 |
Rint | 0.060 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.144, 1.02 |
No. of reflections | 3699 |
No. of parameters | 244 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.23, −0.22 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Acknowledgements
This work was supported by the IMB Research Foundation.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Quinolones, a class of synthetic antibacterial compounds based on a 4–quinolone skeleton, have been the landmark discovery in the treatment of bacterial infections in both community and hospital setting (Ray et al., 2005; Ball et al., 1998;). The most intensive structural variations have been carried out on the basic group at the C–7 position, partially due to the ease of their introduction through a nucleophilic aromatic substitution reaction on the corresponding halide. Piperazine, piperidine, pyrrolidine and their derivatives have been the most successfully employed side chains, as evidenced by the compounds currently on the market (Anderson & Osheroff, 2001; Hong et al., 1997). Recently, as part of an ongoing program to find potent new quinolones displaying strong Gram–positive activity, we have focused our attention on introducing new functional groups to the piperidine ring (Wang et al., 2008). We report here the crystal structure of the title compound, which is a key intermediate of 4–methoxyimino–3–methylamino–3–methylpiperidine, a novel C–7 substituent of the quinolones.
The oxime geometry of the title compound was confirmed to have the E–configuration. In the molecule of the compound (Fig. 1), the N1—C6 (1.352 (3) Å) and N2—C12 (1.359 (3) Å) bond lengths are significantly shorter than the normal C—N bond (1.47 Å), indicating some conjugation with the C6═O2 and C12═O4 carbonyl groups, respectively. The six–membered piperidine ring adopts a chair conformation with displacing N1 and C3 atoms (0.593 (3) Å and -0.654 (3) Å respectively) from the mean–plane (C1, C2, C4 and C5).