organic compounds
Ethyl 6-methylsulfanyl-2-phenyl-1H-imidazo[1,2-b]pyrazole-7-carboxylate monohydrate
aSchool of Chemistry and Chemical Engineering, Shandong University, Jinan 250100, People's Republic of China
*Correspondence e-mail: yugp2005@yahoo.com.cn
The title compound, C15H15N3O2S·H2O, has been obtained in a search for new imidazo[1,2-b]pyrazole derivatives with better biological activity. The 1H-imidazo[1,2-b]pyrazole plane forms a dihedral angle of 16.90 (3)° with the benzene ring. π–π interactions are indicated by the short distance of 3.643 (2) Å between the centroids of the benzene and imidazole rings. The also involves intermolecular O—H⋯N hydrogen bonds.
Related literature
For the biological activity of imidazo[1,2-b]pyrazole derivatives, see: Vanotti et al. (1994); Kinnamon et al. (2000); Li et al. (2005). For bond-length data, see: Allen et al., 1987.
Experimental
Crystal data
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809010988/hg2495sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809010988/hg2495Isup2.hkl
A suspended solution in 30 ml of acetonitrile containing 5 mmol (1.01 g) of ethyl 5-amino-3-methylthio-1H-pyrazole-4-carboxylate, 5 mmol (1.00) of α-bromoacetophenone and 10 mmol (1.38 g) of sodium carbonate was refluxed for about 10 h until the starting materials were consumed completely, as indicated by TLC. On cooling, the solid was removed through filtration, and the filtrate was evaporated to afford a residue, which was dissolved in 30 ml of absolute ethanol, followed by the addition of several drops of concentrated hydrochloric acid. The resulting solution was then refluxed for about 3 h, and cooled to room temperature. The solution was then evaporated in vacuo to afford the crude product, which was purified by using ethyl acetate/petroleum ether (1:5) to give 0.87 g of pure title compound. Crystals suitable for X-ray diffraction were obtained from slow evaporation of a solution of the title compound in dichloromethane/ethyl acetate/petroleum ether (1/2/1) at room temperature.
All H atoms were found on difference maps. The water H atoms were refined freely, giving 0.85 (6) and 0.99 (6)Å, and included in the final cycles of
using a riding model, with Uiso(H) = 1.2Ueq(C, N) and 1.5Ueq(C) for the methyl H atoms.Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1999); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. View of the title compound, with displacement ellipsoids drawn at the 40% probability level. |
C15H15N3O2S·H2O | F(000) = 672 |
Mr = 319.38 | Dx = 1.335 Mg m−3 |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 1077 reflections |
a = 19.017 (2) Å | θ = 2.5–18.0° |
b = 5.4854 (7) Å | µ = 0.22 mm−1 |
c = 15.2314 (18) Å | T = 273 K |
V = 1588.9 (3) Å3 | Block, colorless |
Z = 4 | 0.20 × 0.10 × 0.10 mm |
Bruker SMART CCD area-detector diffractometer | 3326 independent reflections |
Radiation source: fine-focus sealed tube | 1877 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.051 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −24→17 |
Tmin = 0.957, Tmax = 0.978 | k = −7→6 |
8763 measured reflections | l = −19→19 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.094 | w = 1/[σ2(Fo2) + (0.0345P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max = 0.001 |
3326 reflections | Δρmax = 0.15 e Å−3 |
207 parameters | Δρmin = −0.14 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1442 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.01 (9) |
C15H15N3O2S·H2O | V = 1588.9 (3) Å3 |
Mr = 319.38 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 19.017 (2) Å | µ = 0.22 mm−1 |
b = 5.4854 (7) Å | T = 273 K |
c = 15.2314 (18) Å | 0.20 × 0.10 × 0.10 mm |
Bruker SMART CCD area-detector diffractometer | 3326 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1877 reflections with I > 2σ(I) |
Tmin = 0.957, Tmax = 0.978 | Rint = 0.051 |
8763 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.094 | Δρmax = 0.15 e Å−3 |
S = 0.97 | Δρmin = −0.14 e Å−3 |
3326 reflections | Absolute structure: Flack (1983), 1442 Friedel pairs |
207 parameters | Absolute structure parameter: −0.01 (9) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.09788 (5) | −0.14517 (15) | 0.84062 (6) | 0.0691 (3) | |
O1 | 0.15780 (12) | 0.2624 (4) | 0.58697 (15) | 0.0736 (7) | |
O2 | 0.09476 (11) | −0.0245 (4) | 0.65679 (14) | 0.0650 (6) | |
O3 | 0.2436 (2) | 0.6611 (6) | 0.55376 (16) | 0.0945 (10) | |
H3A | 0.275 (3) | 0.647 (9) | 0.502 (4) | 0.16 (2)* | |
H3C | 0.223 (3) | 0.523 (10) | 0.551 (3) | 0.15 (2)* | |
N1 | 0.25532 (13) | 0.5824 (4) | 0.73178 (16) | 0.0526 (7) | |
H1A | 0.2568 | 0.6315 | 0.6782 | 0.063* | |
N2 | 0.22812 (12) | 0.3832 (5) | 0.84912 (16) | 0.0525 (6) | |
N3 | 0.19001 (14) | 0.2003 (5) | 0.88960 (15) | 0.0577 (7) | |
C1 | 0.34450 (18) | 1.0192 (6) | 0.7130 (2) | 0.0603 (9) | |
H1B | 0.3120 | 0.9869 | 0.6689 | 0.072* | |
C2 | 0.3920 (2) | 1.2072 (6) | 0.7024 (2) | 0.0719 (11) | |
H2A | 0.3909 | 1.3011 | 0.6516 | 0.086* | |
C3 | 0.4406 (2) | 1.2562 (7) | 0.7662 (3) | 0.0738 (10) | |
H3B | 0.4727 | 1.3824 | 0.7588 | 0.089* | |
C4 | 0.4416 (2) | 1.1188 (7) | 0.8405 (3) | 0.0839 (10) | |
H4A | 0.4748 | 1.1508 | 0.8838 | 0.101* | |
C5 | 0.39376 (19) | 0.9320 (6) | 0.8522 (3) | 0.0759 (10) | |
H5A | 0.3947 | 0.8413 | 0.9038 | 0.091* | |
C6 | 0.34440 (16) | 0.8779 (6) | 0.7882 (2) | 0.0512 (8) | |
C7 | 0.29409 (17) | 0.6804 (5) | 0.8010 (2) | 0.0527 (8) | |
C8 | 0.27674 (16) | 0.5545 (6) | 0.8748 (2) | 0.0544 (9) | |
H8A | 0.2942 | 0.5792 | 0.9312 | 0.065* | |
C9 | 0.21516 (17) | 0.3985 (6) | 0.76236 (19) | 0.0490 (8) | |
C10 | 0.15369 (15) | 0.1013 (5) | 0.8233 (2) | 0.0511 (8) | |
C11 | 0.16699 (17) | 0.2151 (5) | 0.7410 (2) | 0.0502 (8) | |
C12 | 0.14107 (16) | 0.1594 (6) | 0.6547 (2) | 0.0542 (8) | |
C13 | 0.0647 (2) | −0.1008 (7) | 0.5744 (2) | 0.0850 (12) | |
H13A | 0.1009 | −0.1654 | 0.5360 | 0.102* | |
H13B | 0.0422 | 0.0358 | 0.5452 | 0.102* | |
C14 | 0.0120 (2) | −0.2929 (7) | 0.5953 (3) | 0.0986 (13) | |
H14A | −0.0095 | −0.3494 | 0.5421 | 0.148* | |
H14B | −0.0235 | −0.2265 | 0.6333 | 0.148* | |
H14C | 0.0349 | −0.4267 | 0.6242 | 0.148* | |
C15 | 0.1101 (2) | −0.1931 (7) | 0.9562 (3) | 0.0873 (13) | |
H15A | 0.0816 | −0.3276 | 0.9751 | 0.131* | |
H15B | 0.0966 | −0.0488 | 0.9876 | 0.131* | |
H15C | 0.1587 | −0.2285 | 0.9677 | 0.131* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0711 (6) | 0.0678 (5) | 0.0682 (6) | −0.0051 (5) | 0.0093 (5) | 0.0161 (5) |
O1 | 0.0939 (19) | 0.0829 (16) | 0.0440 (12) | −0.0255 (15) | −0.0010 (14) | 0.0096 (12) |
O2 | 0.0703 (14) | 0.0722 (15) | 0.0526 (14) | −0.0146 (14) | −0.0035 (12) | 0.0025 (12) |
O3 | 0.131 (3) | 0.107 (3) | 0.0453 (15) | −0.041 (2) | 0.0042 (15) | 0.0143 (15) |
N1 | 0.0628 (17) | 0.0571 (16) | 0.0377 (15) | 0.0017 (14) | −0.0024 (13) | 0.0054 (14) |
N2 | 0.0642 (17) | 0.0573 (16) | 0.0359 (15) | 0.0048 (13) | −0.0019 (14) | 0.0087 (13) |
N3 | 0.0700 (19) | 0.0583 (16) | 0.0448 (16) | −0.0010 (15) | 0.0068 (15) | 0.0150 (14) |
C1 | 0.057 (2) | 0.067 (2) | 0.056 (2) | −0.0041 (19) | −0.0011 (16) | 0.0014 (18) |
C2 | 0.082 (3) | 0.074 (3) | 0.060 (2) | −0.006 (2) | 0.013 (2) | 0.007 (2) |
C3 | 0.070 (2) | 0.076 (2) | 0.076 (3) | −0.015 (2) | 0.010 (2) | −0.010 (2) |
C4 | 0.089 (3) | 0.088 (3) | 0.075 (3) | −0.019 (2) | −0.015 (3) | −0.003 (3) |
C5 | 0.088 (3) | 0.077 (2) | 0.062 (2) | −0.011 (2) | −0.018 (2) | 0.006 (2) |
C6 | 0.054 (2) | 0.0534 (18) | 0.046 (2) | 0.0094 (16) | 0.0014 (15) | −0.0006 (15) |
C7 | 0.060 (2) | 0.0549 (19) | 0.0435 (19) | 0.0042 (17) | −0.0012 (17) | 0.0009 (17) |
C8 | 0.062 (2) | 0.060 (2) | 0.0403 (18) | 0.0040 (18) | −0.0048 (15) | 0.0020 (16) |
C9 | 0.0551 (19) | 0.056 (2) | 0.0365 (18) | 0.0079 (17) | 0.0028 (15) | 0.0095 (16) |
C10 | 0.0534 (19) | 0.0508 (18) | 0.049 (2) | 0.0074 (15) | 0.0022 (15) | 0.0050 (16) |
C11 | 0.057 (2) | 0.054 (2) | 0.0405 (17) | 0.0023 (17) | 0.0057 (16) | 0.0049 (16) |
C12 | 0.055 (2) | 0.055 (2) | 0.053 (2) | 0.0005 (17) | 0.0055 (17) | 0.0062 (18) |
C13 | 0.087 (3) | 0.101 (3) | 0.066 (3) | −0.026 (2) | −0.005 (2) | −0.011 (2) |
C14 | 0.108 (3) | 0.094 (3) | 0.095 (3) | −0.043 (3) | 0.001 (3) | −0.013 (2) |
C15 | 0.107 (3) | 0.089 (3) | 0.067 (3) | −0.005 (2) | 0.026 (2) | 0.027 (2) |
S1—C10 | 1.739 (3) | C3—H3B | 0.9300 |
S1—C15 | 1.795 (4) | C4—C5 | 1.382 (4) |
O1—C12 | 1.219 (4) | C4—H4A | 0.9300 |
O2—C12 | 1.339 (3) | C5—C6 | 1.385 (4) |
O2—C13 | 1.442 (4) | C5—H5A | 0.9300 |
O3—H3A | 0.99 (6) | C6—C7 | 1.459 (4) |
O3—H3C | 0.85 (6) | C7—C8 | 1.359 (4) |
N1—C9 | 1.348 (3) | C8—H8A | 0.9300 |
N1—C7 | 1.395 (4) | C9—C11 | 1.399 (4) |
N1—H1A | 0.8600 | C10—C11 | 1.423 (4) |
N2—C9 | 1.347 (4) | C11—C12 | 1.436 (4) |
N2—C8 | 1.375 (4) | C13—C14 | 1.489 (5) |
N2—N3 | 1.383 (3) | C13—H13A | 0.9700 |
N3—C10 | 1.339 (4) | C13—H13B | 0.9700 |
C1—C2 | 1.380 (4) | C14—H14A | 0.9600 |
C1—C6 | 1.383 (4) | C14—H14B | 0.9600 |
C1—H1B | 0.9300 | C14—H14C | 0.9600 |
C2—C3 | 1.368 (5) | C15—H15A | 0.9600 |
C2—H2A | 0.9300 | C15—H15B | 0.9600 |
C3—C4 | 1.360 (5) | C15—H15C | 0.9600 |
Cg1···Cg2i | 3.643 (2) | ||
C10—S1—C15 | 100.60 (17) | C7—C8—H8A | 127.0 |
C12—O2—C13 | 117.3 (3) | N2—C8—H8A | 127.0 |
H3A—O3—H3C | 99 (4) | N2—C9—N1 | 106.4 (3) |
C9—N1—C7 | 109.0 (3) | N2—C9—C11 | 107.7 (3) |
C9—N1—H1A | 125.5 | N1—C9—C11 | 146.0 (3) |
C7—N1—H1A | 125.5 | N3—C10—C11 | 113.3 (3) |
C9—N2—C8 | 111.1 (3) | N3—C10—S1 | 121.0 (2) |
C9—N2—N3 | 112.8 (3) | C11—C10—S1 | 125.7 (2) |
C8—N2—N3 | 136.2 (3) | C9—C11—C10 | 103.1 (3) |
C10—N3—N2 | 103.2 (2) | C9—C11—C12 | 126.2 (3) |
C2—C1—C6 | 121.1 (3) | C10—C11—C12 | 130.6 (3) |
C2—C1—H1B | 119.4 | O1—C12—O2 | 122.7 (3) |
C6—C1—H1B | 119.4 | O1—C12—C11 | 125.9 (3) |
C3—C2—C1 | 120.4 (3) | O2—C12—C11 | 111.4 (3) |
C3—C2—H2A | 119.8 | O2—C13—C14 | 106.6 (3) |
C1—C2—H2A | 119.8 | O2—C13—H13A | 110.4 |
C4—C3—C2 | 119.5 (4) | C14—C13—H13A | 110.4 |
C4—C3—H3B | 120.3 | O2—C13—H13B | 110.4 |
C2—C3—H3B | 120.3 | C14—C13—H13B | 110.4 |
C3—C4—C5 | 120.6 (4) | H13A—C13—H13B | 108.6 |
C3—C4—H4A | 119.7 | C13—C14—H14A | 109.5 |
C5—C4—H4A | 119.7 | C13—C14—H14B | 109.5 |
C4—C5—C6 | 120.9 (4) | H14A—C14—H14B | 109.5 |
C4—C5—H5A | 119.5 | C13—C14—H14C | 109.5 |
C6—C5—H5A | 119.5 | H14A—C14—H14C | 109.5 |
C1—C6—C5 | 117.5 (3) | H14B—C14—H14C | 109.5 |
C1—C6—C7 | 121.9 (3) | S1—C15—H15A | 109.5 |
C5—C6—C7 | 120.6 (3) | S1—C15—H15B | 109.5 |
C8—C7—N1 | 107.5 (3) | H15A—C15—H15B | 109.5 |
C8—C7—C6 | 130.3 (3) | S1—C15—H15C | 109.5 |
N1—C7—C6 | 122.1 (3) | H15A—C15—H15C | 109.5 |
C7—C8—N2 | 106.0 (3) | H15B—C15—H15C | 109.5 |
C9—N2—N3—C10 | 0.9 (3) | N3—N2—C9—C11 | −1.2 (3) |
C8—N2—N3—C10 | −178.6 (3) | C7—N1—C9—N2 | 0.5 (3) |
C6—C1—C2—C3 | 0.6 (5) | C7—N1—C9—C11 | −177.5 (4) |
C1—C2—C3—C4 | −0.3 (5) | N2—N3—C10—C11 | −0.2 (3) |
C2—C3—C4—C5 | −0.5 (6) | N2—N3—C10—S1 | 178.80 (19) |
C3—C4—C5—C6 | 1.0 (6) | C15—S1—C10—N3 | −0.8 (3) |
C2—C1—C6—C5 | −0.1 (5) | C15—S1—C10—C11 | 178.0 (3) |
C2—C1—C6—C7 | 179.2 (3) | N2—C9—C11—C10 | 1.0 (3) |
C4—C5—C6—C1 | −0.7 (5) | N1—C9—C11—C10 | 179.0 (4) |
C4—C5—C6—C7 | 179.9 (3) | N2—C9—C11—C12 | −177.1 (3) |
C9—N1—C7—C8 | −0.4 (3) | N1—C9—C11—C12 | 0.9 (7) |
C9—N1—C7—C6 | 178.0 (2) | N3—C10—C11—C9 | −0.5 (3) |
C1—C6—C7—C8 | −165.9 (3) | S1—C10—C11—C9 | −179.5 (2) |
C5—C6—C7—C8 | 13.5 (5) | N3—C10—C11—C12 | 177.5 (3) |
C1—C6—C7—N1 | 16.2 (4) | S1—C10—C11—C12 | −1.4 (5) |
C5—C6—C7—N1 | −164.4 (3) | C13—O2—C12—O1 | 0.4 (4) |
N1—C7—C8—N2 | 0.1 (3) | C13—O2—C12—C11 | −179.7 (3) |
C6—C7—C8—N2 | −178.1 (3) | C9—C11—C12—O1 | 0.8 (5) |
C9—N2—C8—C7 | 0.2 (3) | C10—C11—C12—O1 | −176.9 (3) |
N3—N2—C8—C7 | 179.7 (3) | C9—C11—C12—O2 | −179.1 (3) |
C8—N2—C9—N1 | −0.5 (3) | C10—C11—C12—O2 | 3.2 (4) |
N3—N2—C9—N1 | 179.9 (2) | C12—O2—C13—C14 | −176.1 (3) |
C8—N2—C9—C11 | 178.4 (2) |
Symmetry code: (i) x, y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···N3ii | 0.99 (6) | 1.86 (6) | 2.809 (4) | 160 (5) |
Symmetry code: (ii) −x+1/2, y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C15H15N3O2S·H2O |
Mr | 319.38 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 273 |
a, b, c (Å) | 19.017 (2), 5.4854 (7), 15.2314 (18) |
V (Å3) | 1588.9 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.22 |
Crystal size (mm) | 0.20 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.957, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8763, 3326, 1877 |
Rint | 0.051 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.094, 0.97 |
No. of reflections | 3326 |
No. of parameters | 207 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.15, −0.14 |
Absolute structure | Flack (1983), 1442 Friedel pairs |
Absolute structure parameter | −0.01 (9) |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1999), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3A···N3i | 0.99 (6) | 1.86 (6) | 2.809 (4) | 160 (5) |
Symmetry code: (i) −x+1/2, y+1/2, z−1/2. |
References
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Imidazo[1,2-b]pyrazole derivatives have been reported to show various biological activities [Vanotti et al., 1994; Kinnamon et al., 2000], in continuation of our research interest in this field [Li et al., 2005], the new title compound has been synthesized in a search for new compounds with better biological activity, and its crystal structure was determined by X-ray diffraction method.
The title compound crystallizes as a monohydrate (Fig. 1), all bond lengths are normal and in a good agreement with those reported previously (Allen et al., 1987). Atoms S1/O1/O2/C12/C13/C14 lie in 1H-imidazo[1,2-b]pyrazole (C7—C11/N1/N2/N3) plane with maximum least squares plane deviation for C14 0.070 (3) Å. The 1H-imidazo[1,2-b]pyrazole plane forms dihedral angles of 16.90 (3)° with the benzene ring (C1—C6). π-π stacking interactions (Table 1) are present in the structure. The crystal structure involves intermolecular are O–H···N hydrogen bonds.