organic compounds
4-[1-(4-Cyanobenzyl)-1H-benzimidazol-2-yl]benzonitrile
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Chemistry, School of Science, Payame Noor University (PNU), Ardakan, Yazd, Iran
*Correspondence e-mail: hkfun@usm.my
In the title compound, C22H14N4, a new substituted benzimidazole, three intermolecular C—H⋯N interactions link neighbouring molecules into different dimers with R22(12), R22(8) and R22(24) ring motifs. A fourth C—H⋯N interaction links neighbouring molecules along the c axis. There is also a short intermolecular contact between the azomethine (C=N) segment of the benzimidazole ring and one of the C atoms of a neighbouring benzene ring [N⋯C = 3.191 (5), C⋯C = 3.364 (6) Å], which links the molecules along the a axis. The two cyanobenzene rings are almost perpendicular to each other, with an interplanar angle of 87.70 (7)°. The dihedral angles between the mean planes of the benzimidazole ring and the two outer benzene rings are 36.27 (16) and 86.70 (16)°. In the molecules are stacked down the a axis with centroid–centroid distances of 3.906 (2)–3.912 (2) Å and interplanar distances of 3.5040 (17) and 3.6235 (17) Å.
Related literature
For hydrogen-bond motifs, see: Bernstein et al. (1995). For benzimidazole chemistry, reaction mechanisms and their bioactivity, see, for example: Latif et al. (1983); Craigo et al. (1999); Gudmundsson et al. (2000); Trivedi et al. (2006); Kim et al. (1996); Ramla et al. (2006). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809006989/zl2173sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809006989/zl2173Isup2.hkl
An ethanolic solution (50 ml) of 4-cyanobenzaldehyde (2 mmol, 263 mg) was added to 1,2-phenylenediamine (1 mmol, 217 mg). The mixture was refluxed for 2 h, and cooled to room temperature. The resulting colourless powder was filtered, washed with cooled ethanol and dried in vacuo. Single crystals suitable for X-ray diffraction were obtained from an ethanol solution at room temperature.
All hydrogen atoms were positioned gemetrically and refined in a riding model approximation with C—H = 0.93–0.97 Å and Uiso (H) = 1.2 Ueq (C).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C22H14N4 | F(000) = 696 |
Mr = 334.37 | Dx = 1.302 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 3931 reflections |
a = 5.0553 (4) Å | θ = 2.4–30.2° |
b = 17.3437 (10) Å | µ = 0.08 mm−1 |
c = 19.6339 (14) Å | T = 100 K |
β = 97.653 (5)° | Needle, colourless |
V = 1706.1 (2) Å3 | 0.45 × 0.09 × 0.04 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 2906 independent reflections |
Radiation source: fine-focus sealed tube | 1490 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.153 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −6→6 |
Tmin = 0.965, Tmax = 0.997 | k = −20→20 |
15641 measured reflections | l = −23→22 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.079 | H-atom parameters constrained |
wR(F2) = 0.169 | w = 1/[σ2(Fo2) + (0.0473P)2 + 1.9898P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
2906 reflections | Δρmax = 0.26 e Å−3 |
236 parameters | Δρmin = −0.35 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0124 (18) |
C22H14N4 | V = 1706.1 (2) Å3 |
Mr = 334.37 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 5.0553 (4) Å | µ = 0.08 mm−1 |
b = 17.3437 (10) Å | T = 100 K |
c = 19.6339 (14) Å | 0.45 × 0.09 × 0.04 mm |
β = 97.653 (5)° |
Bruker SMART APEXII CCD area-detector diffractometer | 2906 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1490 reflections with I > 2σ(I) |
Tmin = 0.965, Tmax = 0.997 | Rint = 0.153 |
15641 measured reflections |
R[F2 > 2σ(F2)] = 0.079 | 0 restraints |
wR(F2) = 0.169 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.26 e Å−3 |
2906 reflections | Δρmin = −0.35 e Å−3 |
236 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.7041 (7) | 0.41520 (18) | 0.10705 (18) | 0.0222 (9) | |
N2 | 0.8001 (6) | 0.29462 (17) | 0.14467 (17) | 0.0196 (9) | |
N3 | 1.5730 (8) | 0.3343 (2) | −0.1704 (2) | 0.0366 (11) | |
N4 | 0.1768 (8) | −0.0990 (2) | 0.05749 (19) | 0.0328 (10) | |
C1 | 0.5702 (8) | 0.3997 (2) | 0.1633 (2) | 0.0205 (10) | |
C2 | 0.3933 (8) | 0.4456 (2) | 0.1943 (2) | 0.0250 (11) | |
H2A | 0.3510 | 0.4953 | 0.1787 | 0.030* | |
C3 | 0.2841 (8) | 0.4148 (2) | 0.2487 (2) | 0.0271 (11) | |
H3A | 0.1639 | 0.4441 | 0.2697 | 0.033* | |
C4 | 0.3485 (8) | 0.3408 (2) | 0.2733 (2) | 0.0272 (11) | |
H4A | 0.2719 | 0.3223 | 0.3105 | 0.033* | |
C5 | 0.5240 (8) | 0.2944 (2) | 0.2434 (2) | 0.0240 (11) | |
H5A | 0.5681 | 0.2451 | 0.2597 | 0.029* | |
C6 | 0.6310 (8) | 0.3255 (2) | 0.1876 (2) | 0.0197 (10) | |
C7 | 0.8349 (8) | 0.3516 (2) | 0.0971 (2) | 0.0196 (10) | |
C8 | 0.9937 (8) | 0.3425 (2) | 0.0400 (2) | 0.0183 (10) | |
C9 | 1.0085 (8) | 0.2747 (2) | 0.0032 (2) | 0.0206 (11) | |
H9A | 0.9193 | 0.2310 | 0.0153 | 0.025* | |
C10 | 1.1554 (8) | 0.2718 (2) | −0.0515 (2) | 0.0248 (11) | |
H10A | 1.1656 | 0.2262 | −0.0758 | 0.030* | |
C11 | 1.2870 (8) | 0.3372 (2) | −0.0697 (2) | 0.0207 (11) | |
C12 | 1.2703 (8) | 0.4059 (2) | −0.0344 (2) | 0.0228 (11) | |
H12A | 1.3561 | 0.4499 | −0.0473 | 0.027* | |
C13 | 1.1248 (8) | 0.4079 (2) | 0.0200 (2) | 0.0229 (11) | |
H13A | 1.1135 | 0.4538 | 0.0439 | 0.027* | |
C14 | 0.9363 (8) | 0.2212 (2) | 0.1570 (2) | 0.0221 (11) | |
H14A | 0.9987 | 0.2167 | 0.2057 | 0.026* | |
H14B | 1.0918 | 0.2209 | 0.1329 | 0.026* | |
C15 | 0.7667 (8) | 0.1513 (2) | 0.1346 (2) | 0.0193 (10) | |
C16 | 0.8439 (8) | 0.0795 (2) | 0.1615 (2) | 0.0232 (11) | |
H16A | 0.9962 | 0.0751 | 0.1935 | 0.028* | |
C17 | 0.6958 (8) | 0.0145 (2) | 0.1410 (2) | 0.0256 (11) | |
H17A | 0.7492 | −0.0336 | 0.1589 | 0.031* | |
C18 | 0.4669 (8) | 0.0212 (2) | 0.0936 (2) | 0.0217 (11) | |
C19 | 0.3883 (8) | 0.0931 (2) | 0.0667 (2) | 0.0228 (11) | |
H19A | 0.2349 | 0.0978 | 0.0351 | 0.027* | |
C20 | 0.5388 (8) | 0.1572 (2) | 0.0871 (2) | 0.0208 (10) | |
H20A | 0.4869 | 0.2052 | 0.0687 | 0.025* | |
C21 | 1.4437 (9) | 0.3350 (2) | −0.1261 (3) | 0.0281 (12) | |
C22 | 0.3071 (9) | −0.0458 (2) | 0.0734 (2) | 0.0256 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.028 (2) | 0.016 (2) | 0.023 (2) | 0.0017 (16) | 0.0025 (19) | −0.0006 (16) |
N2 | 0.026 (2) | 0.0127 (19) | 0.019 (2) | 0.0003 (15) | 0.0024 (18) | −0.0026 (16) |
N3 | 0.043 (3) | 0.031 (2) | 0.036 (3) | −0.0030 (19) | 0.006 (2) | −0.001 (2) |
N4 | 0.045 (3) | 0.027 (2) | 0.027 (2) | −0.006 (2) | 0.006 (2) | −0.0006 (18) |
C1 | 0.026 (2) | 0.016 (3) | 0.019 (3) | −0.0022 (19) | 0.003 (2) | −0.003 (2) |
C2 | 0.029 (3) | 0.015 (2) | 0.030 (3) | 0.003 (2) | 0.000 (2) | −0.006 (2) |
C3 | 0.025 (2) | 0.031 (3) | 0.027 (3) | −0.004 (2) | 0.007 (2) | −0.006 (2) |
C4 | 0.032 (3) | 0.026 (3) | 0.026 (3) | −0.008 (2) | 0.008 (2) | −0.006 (2) |
C5 | 0.028 (3) | 0.019 (2) | 0.024 (3) | −0.003 (2) | −0.002 (2) | −0.003 (2) |
C6 | 0.024 (2) | 0.016 (2) | 0.018 (3) | −0.0035 (19) | 0.001 (2) | −0.005 (2) |
C7 | 0.021 (2) | 0.017 (2) | 0.019 (3) | −0.0054 (19) | −0.005 (2) | 0.000 (2) |
C8 | 0.021 (2) | 0.015 (2) | 0.019 (3) | 0.0019 (18) | 0.001 (2) | 0.003 (2) |
C9 | 0.023 (2) | 0.016 (3) | 0.023 (3) | −0.0008 (18) | 0.003 (2) | 0.004 (2) |
C10 | 0.032 (3) | 0.022 (3) | 0.019 (3) | 0.002 (2) | −0.001 (2) | −0.001 (2) |
C11 | 0.022 (2) | 0.021 (3) | 0.020 (3) | 0.0000 (19) | 0.004 (2) | 0.005 (2) |
C12 | 0.031 (3) | 0.017 (3) | 0.021 (3) | −0.0037 (19) | 0.004 (2) | −0.002 (2) |
C13 | 0.031 (3) | 0.015 (2) | 0.022 (3) | 0.002 (2) | 0.002 (2) | −0.002 (2) |
C14 | 0.023 (2) | 0.021 (2) | 0.023 (3) | 0.0009 (19) | 0.003 (2) | 0.0011 (19) |
C15 | 0.023 (3) | 0.016 (2) | 0.019 (3) | 0.0013 (18) | 0.005 (2) | −0.0030 (19) |
C16 | 0.026 (2) | 0.020 (2) | 0.024 (3) | −0.001 (2) | 0.004 (2) | 0.001 (2) |
C17 | 0.026 (3) | 0.019 (2) | 0.032 (3) | 0.003 (2) | 0.004 (3) | 0.001 (2) |
C18 | 0.026 (3) | 0.017 (2) | 0.024 (3) | −0.0035 (19) | 0.010 (2) | −0.004 (2) |
C19 | 0.021 (2) | 0.024 (3) | 0.022 (3) | 0.000 (2) | 0.001 (2) | 0.001 (2) |
C20 | 0.027 (3) | 0.015 (2) | 0.021 (3) | 0.0006 (19) | 0.004 (2) | −0.0002 (19) |
C21 | 0.035 (3) | 0.019 (3) | 0.030 (3) | −0.003 (2) | 0.003 (3) | 0.000 (2) |
C22 | 0.033 (3) | 0.023 (3) | 0.022 (3) | −0.001 (2) | 0.007 (2) | 0.002 (2) |
N1—C7 | 1.314 (5) | C10—C11 | 1.385 (5) |
N1—C1 | 1.397 (5) | C10—H10A | 0.9300 |
N2—C6 | 1.385 (5) | C11—C12 | 1.387 (5) |
N2—C7 | 1.387 (5) | C11—C21 | 1.446 (6) |
N2—C14 | 1.453 (5) | C12—C13 | 1.376 (5) |
N3—C21 | 1.155 (5) | C12—H12A | 0.9300 |
N4—C22 | 1.152 (5) | C13—H13A | 0.9300 |
C1—C6 | 1.391 (5) | C14—C15 | 1.515 (5) |
C1—C2 | 1.397 (5) | C14—H14A | 0.9700 |
C2—C3 | 1.375 (6) | C14—H14B | 0.9700 |
C2—H2A | 0.9300 | C15—C20 | 1.386 (5) |
C3—C4 | 1.393 (6) | C15—C16 | 1.388 (5) |
C3—H3A | 0.9300 | C16—C17 | 1.384 (5) |
C4—C5 | 1.385 (6) | C16—H16A | 0.9300 |
C4—H4A | 0.9300 | C17—C18 | 1.390 (5) |
C5—C6 | 1.394 (6) | C17—H17A | 0.9300 |
C5—H5A | 0.9300 | C18—C19 | 1.391 (5) |
C7—C8 | 1.472 (6) | C18—C22 | 1.440 (6) |
C8—C9 | 1.387 (5) | C19—C20 | 1.377 (5) |
C8—C13 | 1.397 (5) | C19—H19A | 0.9300 |
C9—C10 | 1.385 (5) | C20—H20A | 0.9300 |
C9—H9A | 0.9300 | ||
C7—N1—C1 | 105.2 (3) | C10—C11—C21 | 120.6 (4) |
C6—N2—C7 | 106.1 (3) | C12—C11—C21 | 118.8 (4) |
C6—N2—C14 | 123.7 (3) | C13—C12—C11 | 119.0 (4) |
C7—N2—C14 | 129.6 (3) | C13—C12—H12A | 120.5 |
C6—C1—C2 | 120.2 (4) | C11—C12—H12A | 120.5 |
C6—C1—N1 | 109.9 (4) | C12—C13—C8 | 121.3 (4) |
C2—C1—N1 | 129.8 (4) | C12—C13—H13A | 119.3 |
C3—C2—C1 | 117.6 (4) | C8—C13—H13A | 119.3 |
C3—C2—H2A | 121.2 | N2—C14—C15 | 114.6 (3) |
C1—C2—H2A | 121.2 | N2—C14—H14A | 108.6 |
C2—C3—C4 | 121.8 (4) | C15—C14—H14A | 108.6 |
C2—C3—H3A | 119.1 | N2—C14—H14B | 108.6 |
C4—C3—H3A | 119.1 | C15—C14—H14B | 108.6 |
C5—C4—C3 | 121.5 (4) | H14A—C14—H14B | 107.6 |
C5—C4—H4A | 119.3 | C20—C15—C16 | 119.3 (4) |
C3—C4—H4A | 119.3 | C20—C15—C14 | 121.6 (3) |
C4—C5—C6 | 116.4 (4) | C16—C15—C14 | 119.2 (4) |
C4—C5—H5A | 121.8 | C17—C16—C15 | 120.4 (4) |
C6—C5—H5A | 121.8 | C17—C16—H16A | 119.8 |
N2—C6—C1 | 106.0 (4) | C15—C16—H16A | 119.8 |
N2—C6—C5 | 131.6 (4) | C16—C17—C18 | 119.7 (4) |
C1—C6—C5 | 122.4 (4) | C16—C17—H17A | 120.1 |
N1—C7—N2 | 112.7 (4) | C18—C17—H17A | 120.1 |
N1—C7—C8 | 122.6 (4) | C17—C18—C19 | 120.0 (4) |
N2—C7—C8 | 124.6 (4) | C17—C18—C22 | 120.2 (4) |
C9—C8—C13 | 118.8 (4) | C19—C18—C22 | 119.8 (4) |
C9—C8—C7 | 124.0 (4) | C20—C19—C18 | 119.6 (4) |
C13—C8—C7 | 117.1 (4) | C20—C19—H19A | 120.2 |
C10—C9—C8 | 120.4 (4) | C18—C19—H19A | 120.2 |
C10—C9—H9A | 119.8 | C19—C20—C15 | 120.9 (4) |
C8—C9—H9A | 119.8 | C19—C20—H20A | 119.6 |
C9—C10—C11 | 119.8 (4) | C15—C20—H20A | 119.6 |
C9—C10—H10A | 120.1 | N3—C21—C11 | 178.5 (5) |
C11—C10—H10A | 120.1 | N4—C22—C18 | 179.2 (5) |
C10—C11—C12 | 120.7 (4) | ||
C7—N1—C1—C6 | 1.5 (4) | N2—C7—C8—C13 | −147.4 (4) |
C7—N1—C1—C2 | −177.1 (4) | C13—C8—C9—C10 | 1.3 (6) |
C6—C1—C2—C3 | −0.1 (6) | C7—C8—C9—C10 | 177.7 (4) |
N1—C1—C2—C3 | 178.4 (4) | C8—C9—C10—C11 | −0.3 (6) |
C1—C2—C3—C4 | 0.9 (6) | C9—C10—C11—C12 | −0.9 (6) |
C2—C3—C4—C5 | −0.7 (6) | C9—C10—C11—C21 | 179.3 (4) |
C3—C4—C5—C6 | −0.3 (6) | C10—C11—C12—C13 | 1.2 (6) |
C7—N2—C6—C1 | 0.4 (4) | C21—C11—C12—C13 | −179.0 (4) |
C14—N2—C6—C1 | 172.4 (3) | C11—C12—C13—C8 | −0.2 (6) |
C7—N2—C6—C5 | 178.7 (4) | C9—C8—C13—C12 | −1.0 (6) |
C14—N2—C6—C5 | −9.3 (6) | C7—C8—C13—C12 | −177.7 (4) |
C2—C1—C6—N2 | 177.5 (3) | C6—N2—C14—C15 | 81.2 (5) |
N1—C1—C6—N2 | −1.2 (4) | C7—N2—C14—C15 | −108.9 (4) |
C2—C1—C6—C5 | −1.0 (6) | N2—C14—C15—C20 | 20.2 (5) |
N1—C1—C6—C5 | −179.7 (4) | N2—C14—C15—C16 | −160.9 (4) |
C4—C5—C6—N2 | −177.0 (4) | C20—C15—C16—C17 | 0.2 (6) |
C4—C5—C6—C1 | 1.1 (6) | C14—C15—C16—C17 | −178.7 (4) |
C1—N1—C7—N2 | −1.3 (4) | C15—C16—C17—C18 | −0.6 (6) |
C1—N1—C7—C8 | 177.1 (3) | C16—C17—C18—C19 | 0.4 (6) |
C6—N2—C7—N1 | 0.5 (4) | C16—C17—C18—C22 | −178.2 (4) |
C14—N2—C7—N1 | −170.8 (4) | C17—C18—C19—C20 | 0.2 (6) |
C6—N2—C7—C8 | −177.8 (4) | C22—C18—C19—C20 | 178.7 (4) |
C14—N2—C7—C8 | 10.9 (6) | C18—C19—C20—C15 | −0.6 (6) |
N1—C7—C8—C9 | −142.1 (4) | C16—C15—C20—C19 | 0.3 (6) |
N2—C7—C8—C9 | 36.1 (6) | C14—C15—C20—C19 | 179.3 (4) |
N1—C7—C8—C13 | 34.4 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12A···N1i | 0.93 | 2.62 | 3.425 (5) | 146 |
C19—H19A···N4ii | 0.93 | 2.57 | 3.502 (6) | 175 |
C9—H9A···N4iii | 0.93 | 2.71 | 3.361 (5) | 128 |
C14—H14A···N3iv | 0.97 | 2.57 | 3.502 (5) | 162 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x, −y, −z; (iii) −x+1, −y, −z; (iv) x−1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C22H14N4 |
Mr | 334.37 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 5.0553 (4), 17.3437 (10), 19.6339 (14) |
β (°) | 97.653 (5) |
V (Å3) | 1706.1 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.45 × 0.09 × 0.04 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.965, 0.997 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15641, 2906, 1490 |
Rint | 0.153 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.079, 0.169, 1.07 |
No. of reflections | 2906 |
No. of parameters | 236 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.35 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12A···N1i | 0.9300 | 2.6200 | 3.425 (5) | 146.00 |
C19—H19A···N4ii | 0.9300 | 2.5700 | 3.502 (6) | 175.00 |
C9—H9A···N4iii | 0.9300 | 2.7100 | 3.361 (5) | 128.00 |
C14—H14A···N3iv | 0.9700 | 2.5700 | 3.502 (5) | 162.00 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x, −y, −z; (iii) −x+1, −y, −z; (iv) x−1/2, −y+1/2, z+1/2. |
Acknowledgements
HKF and RK thank the Malaysian Government and Universiti Sains Malaysia for the Science Fund grant No. 305/PFIZIK/613312. RK thanks Universiti Sains Malaysia for a post-doctoral research fellowship. HK thanks PNU for financial support. HKF also thanks Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazoles are used widely in biological applications and as pharmaceutical agents (Craigo et al., 1999; Gudmundsson et al., 2000; Trivedi et al., 2006). They are also used as topoisomerase I inhibitors (Kim et al., 1996) and for antitumor activity (Ramla et al., 2006). Due to these important applications, many synthetic routes towards benzimidazoles have been developed. They can, for example, be synthesized by the reaction of phenolic aldehydes with o-phenylenediamine (Latif et al., 1983). Based on this route the title compound was synthesized and its crystal structure is reported here.
The title compound, Fig.1, comprises a single molecule in the asymmetric unit. Three intermolecular C—H···N interactions link neighbouring molecules into different dimers with R22(12), R22(8) and R22(24) ring motifs (Bernstein et al., 1995). A fourth C—H···N interaction links neighbouring molecules along the c axis. The two cyanobenzene rings are almost perpendicular to each other, with an interplanar angle of 87.70 (7)°. The dihedral angles between the the mean planes of the benzimidazole ring and the two outer benzene rings are 36.27 (16) and 86.70 (16)°. There is also a short intermolecular contact between the azomethine (C1═N1) segment of the benzimidazole ring and one of the carbon atoms (C13) of the neighbouring benzene rings which links the molecules along the a axis (N1···C13v = 3.191 (5) C1···C13v = 3.364 (6), symmetry code: (v) x-1, y, z). In the crystal structure, the molecules are stacked down the a axis with centroid to centroid distances of 3.906 (2)–3.912 (2) Å and interplanar distances of 3.5040 (17) and 3.6235 (17) Å [Cg1···Cg2vi = 3.906 (2); (vi) 1 + x, y, z and Cg1···Cg3vii = 3.912 (2) Å; (vii) -1 + x, y, z: Cg1, Cg2 and Cg3 are the centroids of the N1/C1/C6/N2/C7, C1–C6, and C8–C13 benzene rings] (Fig. 2).