organic compounds
5-(4-Pyridyl)-1,3,4-thiadiazol-2-amine
aDepartment of Applied Chemistry, College of Science, Nanjing University of Technology, No. 5 Xinmofan Road, Nanjing, Nanjing 210009, People's Republic of China
*Correspondence e-mail: rwan@njut.edu.cn
The title compound, C7H6N4S, was synthesized by reacting pyridine-4-carboxylic acid and thiosemicarbazide. The contains two independent molecules, which present different conformations, the dihedral angles between the thiadiazole and pyridine rings being 18.2 (2) and 30.3 (2)°. In the crystal, intermolecular N—H⋯N hydrogen bonds involving the amine groups as donors link molecules into a two-dimensional framework.
Related literature
For the biological activity of 1,3,4-thiadiazoles, see: Nakagawa et al. (1996); Wang et al. (1999). For the structure of 2-amino-5-phenyl-1,3,4-thiadiazole, see: Öztürk et al. (2004).
Experimental
Crystal data
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Refinement
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Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989); cell CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo,1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809014470/bh2224sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809014470/bh2224Isup2.hkl
4-Pyridinecarboxylic acid (2 mmol) and thiosemicarbazide (5 mmol) were mixed in a 25 ml flask, and kept in the oil bath at 363 K for 6 h. After cooling, the crude product precipitated and was filtered. Pure compound was obtained by crystallization from ethanol. Crystals suitable for X-ray diffraction were obtained by slow evaporation of an acetone solution.
All H atoms were placed geometrically with C—H and N—H bond lengths fixed to 0.93 and 0.86 Å, respectively, and included in the
in the riding motion approximation, with Uiso(H) = 1.2 Ueq(carrier atom). In the B molecule, displacement parameters for atoms C3B/C4B/C5B/C6B/N4B/C7B were restrained to approximate an isotropic behaviour, and a rigid bond restraint was applied to fragments C3B/C4B/C5B/C6B and N4B C7B.Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989); cell
CAD-4 EXPRESS (Enraf–Nonius, 1989); data reduction: XCAD4 (Harms & Wocadlo,1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C7H6N4S | F(000) = 736 |
Mr = 178.22 | Dx = 1.491 Mg m−3 |
Monoclinic, P21/c | Melting point: 543 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 14.794 (3) Å | Cell parameters from 25 reflections |
b = 10.686 (2) Å | θ = 9–12° |
c = 10.477 (2) Å | µ = 0.35 mm−1 |
β = 106.52 (3)° | T = 293 K |
V = 1587.9 (5) Å3 | Block, colorless |
Z = 8 | 0.20 × 0.10 × 0.10 mm |
Enraf–Nonius CAD-4 diffractometer | 1516 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.042 |
Graphite monochromator | θmax = 26.0°, θmin = 1.4° |
ω/2θ scans | h = −18→17 |
Absorption correction: ψ scan (North et al., 1968) | k = −13→0 |
Tmin = 0.933, Tmax = 0.966 | l = 0→12 |
3203 measured reflections | 3 standard reflections every 200 reflections |
3023 independent reflections | intensity decay: 1% |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.067 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.142 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0435P)2] where P = (Fo2 + 2Fc2)/3 |
3023 reflections | (Δ/σ)max < 0.001 |
217 parameters | Δρmax = 0.24 e Å−3 |
43 restraints | Δρmin = −0.31 e Å−3 |
0 constraints |
C7H6N4S | V = 1587.9 (5) Å3 |
Mr = 178.22 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.794 (3) Å | µ = 0.35 mm−1 |
b = 10.686 (2) Å | T = 293 K |
c = 10.477 (2) Å | 0.20 × 0.10 × 0.10 mm |
β = 106.52 (3)° |
Enraf–Nonius CAD-4 diffractometer | 1516 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.042 |
Tmin = 0.933, Tmax = 0.966 | 3 standard reflections every 200 reflections |
3203 measured reflections | intensity decay: 1% |
3023 independent reflections |
R[F2 > 2σ(F2)] = 0.067 | 43 restraints |
wR(F2) = 0.142 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.24 e Å−3 |
3023 reflections | Δρmin = −0.31 e Å−3 |
217 parameters |
x | y | z | Uiso*/Ueq | ||
SA | 0.08251 (8) | 0.54450 (10) | 0.19829 (12) | 0.0483 (4) | |
N1A | 0.3034 (3) | 0.3300 (4) | −0.0749 (4) | 0.0551 (11) | |
N2A | 0.0328 (3) | 0.3203 (3) | 0.1338 (4) | 0.0513 (10) | |
N3A | −0.0258 (2) | 0.3605 (3) | 0.2081 (4) | 0.0509 (10) | |
N4A | −0.0553 (2) | 0.5382 (3) | 0.3223 (3) | 0.0548 (11) | |
H4A | −0.0999 | 0.5013 | 0.3454 | 0.066* | |
H4B | −0.0408 | 0.6143 | 0.3462 | 0.066* | |
C1A | 0.2262 (3) | 0.2621 (5) | −0.0932 (4) | 0.0604 (14) | |
H1B | 0.2192 | 0.1944 | −0.1510 | 0.073* | |
C2A | 0.3105 (3) | 0.4259 (5) | 0.0056 (5) | 0.0601 (14) | |
H2B | 0.3635 | 0.4769 | 0.0204 | 0.072* | |
C3A | 0.2430 (3) | 0.4551 (4) | 0.0697 (4) | 0.0485 (12) | |
H3B | 0.2515 | 0.5243 | 0.1256 | 0.058* | |
C4A | 0.1643 (3) | 0.3827 (4) | 0.0511 (4) | 0.0393 (11) | |
C5A | 0.1561 (3) | 0.2820 (4) | −0.0357 (4) | 0.0549 (13) | |
H5A | 0.1038 | 0.2296 | −0.0538 | 0.066* | |
C6A | 0.0928 (3) | 0.4040 (4) | 0.1217 (4) | 0.0413 (11) | |
C7A | −0.0070 (3) | 0.4754 (4) | 0.2470 (4) | 0.0396 (11) | |
SB | 0.43176 (9) | 0.68957 (10) | −0.17070 (12) | 0.0505 (4) | |
N1B | 0.2053 (3) | 0.9156 (4) | 0.0901 (4) | 0.0573 (11) | |
N2B | 0.4342 (3) | 0.9258 (3) | −0.1864 (4) | 0.0518 (11) | |
N3B | 0.4926 (2) | 0.8856 (3) | −0.2569 (4) | 0.0489 (10) | |
N4B | 0.5574 (2) | 0.7052 (3) | −0.3157 (3) | 0.0456 (10) | |
H8A | 0.5907 | 0.7475 | −0.3556 | 0.055* | |
H8B | 0.5607 | 0.6249 | −0.3136 | 0.055* | |
C1B | 0.1980 (3) | 0.8094 (5) | 0.0207 (5) | 0.0562 (13) | |
H8C | 0.1499 | 0.7540 | 0.0226 | 0.067* | |
C2B | 0.2762 (3) | 0.9914 (4) | 0.0858 (4) | 0.0577 (13) | |
H9A | 0.2837 | 1.0650 | 0.1352 | 0.069* | |
C3B | 0.3375 (3) | 0.9687 (4) | 0.0150 (4) | 0.0507 (12) | |
H10A | 0.3841 | 1.0269 | 0.0141 | 0.061* | |
C4B | 0.3308 (3) | 0.8588 (4) | −0.0563 (4) | 0.0362 (10) | |
C5B | 0.2573 (3) | 0.7782 (4) | −0.0528 (4) | 0.0506 (12) | |
H12A | 0.2489 | 0.7035 | −0.1003 | 0.061* | |
C6B | 0.3977 (3) | 0.8349 (4) | −0.1355 (4) | 0.0389 (10) | |
C7B | 0.4998 (3) | 0.7650 (4) | −0.2563 (4) | 0.0380 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
SA | 0.0477 (7) | 0.0469 (7) | 0.0499 (8) | −0.0047 (6) | 0.0134 (6) | −0.0041 (6) |
N1A | 0.054 (3) | 0.071 (3) | 0.041 (2) | 0.013 (2) | 0.015 (2) | −0.002 (2) |
N2A | 0.045 (2) | 0.057 (2) | 0.047 (2) | −0.001 (2) | 0.005 (2) | −0.003 (2) |
N3A | 0.046 (2) | 0.049 (2) | 0.056 (3) | −0.0055 (19) | 0.012 (2) | 0.003 (2) |
N4A | 0.058 (3) | 0.065 (3) | 0.050 (3) | −0.012 (2) | 0.028 (2) | 0.000 (2) |
C1A | 0.054 (3) | 0.080 (4) | 0.043 (3) | −0.004 (3) | 0.006 (3) | −0.024 (3) |
C2A | 0.043 (3) | 0.067 (4) | 0.071 (4) | 0.004 (3) | 0.018 (3) | 0.011 (3) |
C3A | 0.046 (3) | 0.052 (3) | 0.046 (3) | −0.003 (2) | 0.011 (2) | −0.004 (2) |
C4A | 0.029 (2) | 0.050 (3) | 0.031 (3) | 0.003 (2) | −0.006 (2) | 0.006 (2) |
C5A | 0.041 (3) | 0.076 (4) | 0.041 (3) | −0.001 (3) | 0.001 (2) | −0.014 (3) |
C6A | 0.036 (3) | 0.048 (3) | 0.037 (3) | −0.004 (2) | 0.004 (2) | 0.007 (2) |
C7A | 0.035 (2) | 0.046 (3) | 0.032 (2) | 0.009 (2) | 0.002 (2) | 0.012 (2) |
SB | 0.0587 (8) | 0.0404 (6) | 0.0564 (8) | 0.0000 (6) | 0.0229 (7) | 0.0013 (6) |
N1B | 0.048 (3) | 0.069 (3) | 0.055 (3) | 0.010 (2) | 0.015 (2) | 0.007 (2) |
N2B | 0.056 (3) | 0.038 (2) | 0.065 (3) | 0.0007 (19) | 0.022 (2) | 0.003 (2) |
N3B | 0.049 (2) | 0.045 (2) | 0.055 (3) | 0.0003 (19) | 0.019 (2) | −0.004 (2) |
N4B | 0.063 (2) | 0.036 (2) | 0.047 (2) | 0.0107 (18) | 0.031 (2) | 0.0063 (18) |
C1B | 0.039 (3) | 0.069 (3) | 0.060 (3) | −0.009 (3) | 0.013 (3) | 0.007 (3) |
C2B | 0.063 (3) | 0.058 (3) | 0.057 (3) | −0.006 (3) | 0.025 (3) | −0.004 (3) |
C3B | 0.046 (3) | 0.055 (3) | 0.053 (3) | −0.008 (2) | 0.017 (2) | −0.007 (2) |
C4B | 0.031 (2) | 0.039 (2) | 0.034 (2) | 0.0008 (19) | 0.002 (2) | −0.001 (2) |
C5B | 0.047 (3) | 0.046 (3) | 0.059 (3) | −0.002 (2) | 0.016 (2) | 0.001 (2) |
C6B | 0.035 (2) | 0.042 (2) | 0.034 (2) | −0.001 (2) | 0.001 (2) | 0.001 (2) |
C7B | 0.033 (2) | 0.037 (2) | 0.036 (2) | 0.002 (2) | −0.003 (2) | 0.005 (2) |
SA—C7A | 1.716 (4) | SB—C6B | 1.705 (4) |
SA—C6A | 1.729 (4) | SB—C7B | 1.726 (4) |
N1A—C2A | 1.312 (5) | N1B—C1B | 1.335 (5) |
N1A—C1A | 1.320 (5) | N1B—C2B | 1.336 (5) |
N2A—C6A | 1.292 (5) | N2B—C6B | 1.298 (5) |
N2A—N3A | 1.387 (4) | N2B—N3B | 1.356 (4) |
N3A—C7A | 1.298 (5) | N3B—C7B | 1.293 (5) |
N4A—C7A | 1.380 (5) | N4B—C7B | 1.349 (4) |
N4A—H4A | 0.8600 | N4B—H8A | 0.8600 |
N4A—H4B | 0.8600 | N4B—H8B | 0.8600 |
C1A—C5A | 1.356 (6) | C1B—C5B | 1.363 (6) |
C1A—H1B | 0.9300 | C1B—H8C | 0.9300 |
C2A—C3A | 1.389 (6) | C2B—C3B | 1.347 (5) |
C2A—H2B | 0.9300 | C2B—H9A | 0.9300 |
C3A—C4A | 1.365 (5) | C3B—C4B | 1.380 (5) |
C3A—H3B | 0.9300 | C3B—H10A | 0.9300 |
C4A—C5A | 1.392 (5) | C4B—C5B | 1.396 (5) |
C4A—C6A | 1.470 (5) | C4B—C6B | 1.483 (5) |
C5A—H5A | 0.9300 | C5B—H12A | 0.9300 |
C7A—SA—C6A | 86.7 (2) | C6B—SB—C7B | 86.5 (2) |
C2A—N1A—C1A | 115.6 (4) | C1B—N1B—C2B | 116.1 (4) |
C6A—N2A—N3A | 113.4 (4) | C6B—N2B—N3B | 113.0 (3) |
C7A—N3A—N2A | 110.9 (3) | C7B—N3B—N2B | 112.2 (4) |
C7A—N4A—H4A | 120.0 | C7B—N4B—H8A | 120.0 |
C7A—N4A—H4B | 120.0 | C7B—N4B—H8B | 120.0 |
H4A—N4A—H4B | 120.0 | H8A—N4B—H8B | 120.0 |
N1A—C1A—C5A | 126.0 (5) | N1B—C1B—C5B | 123.4 (4) |
N1A—C1A—H1B | 117.0 | N1B—C1B—H8C | 118.3 |
C5A—C1A—H1B | 117.0 | C5B—C1B—H8C | 118.3 |
N1A—C2A—C3A | 123.2 (5) | N1B—C2B—C3B | 124.5 (5) |
N1A—C2A—H2B | 118.4 | N1B—C2B—H9A | 117.7 |
C3A—C2A—H2B | 118.4 | C3B—C2B—H9A | 117.7 |
C4A—C3A—C2A | 120.4 (4) | C2B—C3B—C4B | 119.7 (4) |
C4A—C3A—H3B | 119.8 | C2B—C3B—H10A | 120.2 |
C2A—C3A—H3B | 119.8 | C4B—C3B—H10A | 120.2 |
C3A—C4A—C5A | 116.3 (4) | C3B—C4B—C5B | 116.6 (4) |
C3A—C4A—C6A | 123.2 (4) | C3B—C4B—C6B | 119.5 (4) |
C5A—C4A—C6A | 120.5 (4) | C5B—C4B—C6B | 123.9 (4) |
C1A—C5A—C4A | 118.5 (5) | C1B—C5B—C4B | 119.7 (4) |
C1A—C5A—H5A | 120.8 | C1B—C5B—H12A | 120.2 |
C4A—C5A—H5A | 120.8 | C4B—C5B—H12A | 120.2 |
N2A—C6A—C4A | 123.7 (4) | N2B—C6B—C4B | 121.5 (4) |
N2A—C6A—SA | 113.7 (3) | N2B—C6B—SB | 114.2 (3) |
C4A—C6A—SA | 122.6 (3) | C4B—C6B—SB | 124.3 (3) |
N3A—C7A—N4A | 122.7 (4) | N3B—C7B—N4B | 122.1 (4) |
N3A—C7A—SA | 115.3 (3) | N3B—C7B—SB | 114.1 (3) |
N4A—C7A—SA | 121.9 (3) | N4B—C7B—SB | 123.8 (3) |
C6A—N2A—N3A—C7A | 0.9 (5) | C6B—N2B—N3B—C7B | −0.7 (6) |
C2A—N1A—C1A—C5A | −1.0 (7) | C2B—N1B—C1B—C5B | −0.9 (7) |
C1A—N1A—C2A—C3A | 0.8 (7) | C1B—N1B—C2B—C3B | 1.6 (7) |
N1A—C2A—C3A—C4A | 0.1 (7) | N1B—C2B—C3B—C4B | −2.1 (8) |
C2A—C3A—C4A—C5A | −1.0 (6) | C2B—C3B—C4B—C5B | 1.7 (6) |
C2A—C3A—C4A—C6A | 176.4 (4) | C2B—C3B—C4B—C6B | 179.3 (4) |
N1A—C1A—C5A—C4A | 0.1 (8) | N1B—C1B—C5B—C4B | 0.7 (7) |
C3A—C4A—C5A—C1A | 0.9 (6) | C3B—C4B—C5B—C1B | −1.1 (6) |
C6A—C4A—C5A—C1A | −176.6 (4) | C6B—C4B—C5B—C1B | −178.6 (4) |
N3A—N2A—C6A—C4A | 178.1 (4) | N3B—N2B—C6B—C4B | −179.1 (4) |
N3A—N2A—C6A—SA | −1.2 (5) | N3B—N2B—C6B—SB | −0.4 (5) |
C3A—C4A—C6A—N2A | −160.7 (4) | C3B—C4B—C6B—N2B | −29.4 (6) |
C5A—C4A—C6A—N2A | 16.7 (6) | C5B—C4B—C6B—N2B | 147.9 (4) |
C3A—C4A—C6A—SA | 18.5 (6) | C3B—C4B—C6B—SB | 152.0 (3) |
C5A—C4A—C6A—SA | −164.1 (3) | C5B—C4B—C6B—SB | −30.7 (6) |
C7A—SA—C6A—N2A | 0.9 (3) | C7B—SB—C6B—N2B | 1.0 (3) |
C7A—SA—C6A—C4A | −178.4 (4) | C7B—SB—C6B—C4B | 179.7 (4) |
N2A—N3A—C7A—N4A | 179.9 (4) | N2B—N3B—C7B—N4B | −177.2 (4) |
N2A—N3A—C7A—SA | −0.2 (5) | N2B—N3B—C7B—SB | 1.5 (5) |
C6A—SA—C7A—N3A | −0.4 (3) | C6B—SB—C7B—N3B | −1.4 (3) |
C6A—SA—C7A—N4A | 179.6 (4) | C6B—SB—C7B—N4B | 177.3 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C3A—H3B···SA | 0.93 | 2.82 | 3.191 (5) | 105 |
N4A—H4A···N1Bi | 0.86 | 2.08 | 2.940 (5) | 177 |
N4A—H4B···N2Aii | 0.86 | 2.21 | 3.053 (5) | 166 |
N4B—H8A···N1Aiii | 0.86 | 2.10 | 2.945 (5) | 168 |
N4B—H8B···N2Biv | 0.86 | 2.13 | 2.988 (5) | 178 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2; (iii) −x+1, y+1/2, −z−1/2; (iv) −x+1, y−1/2, −z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C7H6N4S |
Mr | 178.22 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 14.794 (3), 10.686 (2), 10.477 (2) |
β (°) | 106.52 (3) |
V (Å3) | 1587.9 (5) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.35 |
Crystal size (mm) | 0.20 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.933, 0.966 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3203, 3023, 1516 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.616 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.067, 0.142, 1.00 |
No. of reflections | 3023 |
No. of parameters | 217 |
No. of restraints | 43 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.31 |
Computer programs: CAD-4 EXPRESS (Enraf–Nonius, 1989), XCAD4 (Harms & Wocadlo,1995), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N4A—H4A···N1Bi | 0.8600 | 2.0800 | 2.940 (5) | 177 |
N4A—H4B···N2Aii | 0.8600 | 2.2100 | 3.053 (5) | 166 |
N4B—H8A···N1Aiii | 0.8600 | 2.1000 | 2.945 (5) | 168 |
N4B—H8B···N2Biv | 0.8600 | 2.1300 | 2.988 (5) | 178 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, y+1/2, −z+1/2; (iii) −x+1, y+1/2, −z−1/2; (iv) −x+1, y−1/2, −z−1/2. |
Acknowledgements
The authors thank Professor Hua-qin Wang of the Analysis Centre, Nanjing University, for providing the Enraf–Nonius CAD-4 diffractometer for this research project.
References
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1,3,4-Thiadiazole derivatives represent an interesting class of compounds possessing a broad spectrum of biological activity (Nakagawa et al., 1996). These compounds are known to exhibit diverse biological effects, such as insecticidal and fungicidal activities (Wang et al., 1999).
The asymmetric unit of the title compound contains two independent molecules (A and B, see Fig. 1), with bond lengths and angles in expected ranges. (Öztürk et al., 2004). Dihedral angles between thiadiazole and pyridine rings are different in each molecule: 18.2 (2)° for molecule A and 30.3 (2)° in molecule B. In the crystal, molecules are linked through N—H···N hydrogen bonds, forming a two-dimensional supramolecular structure.