metal-organic compounds
Diaquabis[4-(dimethylamino)benzoato](isonicotinamide)zinc(II)
aHacettepe University, Department of Physics, 06800 Beytepe, Ankara, Turkey, bAnadolu University, Faculty of Science, Department of Chemistry, 26470 Yenibağlar, Eskişehir, Turkey, cKarabük University, Department of Physics, 78050, Karabük, Turkey, and dKafkas University, Department of Chemistry, 63100 Kars, Turkey
*Correspondence e-mail: merzifon@hacettepe.edu.tr
The molecule of the title ZnII complex, [Zn(C9H10NO2)2(C6H6N2O)(H2O)2], contains two 4-(dimethylamino)benzoate (DMAB) ligands, one isonicotinamide (INA) ligand and two water molecules; one of the DMAB ions acts as a bidentate ligand while the other and INA are monodentate ligands. The four O atoms in the equatorial plane around the Zn atom form a distorted square-planar arrangement, while the distorted octahedral coordination is completed by the N atom of the INA ligand and the O atom of the water molecule in the axial positions. Intramolecular C—H⋯O hydrogen bonding results in the formation of a six-membered ring adopting an The dihedral angle between the carboxyl groups and the adjacent benzene rings are 4.87 (16) and 2.2 (2)°, while the two benzene rings are oriented at a dihedral angle of 65.13 (8)°. The dihedral angle between the benzene and pyridine rings are 11.47 (7) and 74.83 (8)°, respectively. In the intermolecular O—H⋯O, O—H⋯N and N—H⋯O hydrogen bonds link the molecules into a supramolecular structure. π–π contacts between the pyridine and benzene rings and between the benzene rings [centroid–centroid distances = 3.695 (1) and 3.841 (1) Å, respectively] further stabilize the structure. Weak intermolecular C—H⋯π interactions are also present.
Related literature
For general backgroud, see: Antolini et al. (1982); Chen & Chen (2002); Amiraslanov et al. (1979); Bigoli et al. (1972); Hauptmann et al. (2000); Shnulin et al. (1981); Antsyshkina et al. (1980); Adiwidjaja et al. (1978); Catterick et al. (1974); Krishnamachari (1974). For related structures, see: Greenaway et al. (1984); Hökelek et al. (1995, 1997, 2007, 2008); Hökelek & Necefoğlu (1996, 1997, 2007).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809017620/xu2522sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809017620/xu2522Isup2.hkl
The title compound was prepared by the reaction of ZnSO4.H2O (0.90 g, 5 mmol) in H2O (30 ml) and INA (1.22 g, 10 mmol) in H2O (20 ml) with sodium p-dimethylaminobenzoate (1.88 g, 10 mmol) in H2O (50 ml). The mixture was filtered and set aside to crystallize at ambient temperature for one week, giving colorless single crystals.
H atoms of water molecules and NH2 group were located in difference Fourier maps and refined isotropically, with restrains of O6—H61 = 0.891 (17), O6—H62 = 0.879 (19), O7—H71 = 0.89 (3), O7—H72 = 0.875 (18)Å and H61—O6—H62 = 106 (3) and H71—O7—H72 = 106 (2)°. The remaining H atoms were positioned geometrically with C—H = 0.93 and 0.96 Å, for aromatic and methyl H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C), where x = 1.5 for methyl H and x = 1.2 for aromatic H atoms.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title molecule with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bond is shown as dashed line. |
[Zn(C9H10NO2)2(C6H6N2O)(H2O)2] | Z = 2 |
Mr = 551.91 | F(000) = 576 |
Triclinic, P1 | Dx = 1.471 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.8616 (2) Å | Cell parameters from 9908 reflections |
b = 8.0947 (3) Å | θ = 2.7–28.4° |
c = 22.4953 (4) Å | µ = 1.04 mm−1 |
α = 90.683 (2)° | T = 100 K |
β = 92.838 (2)° | Block, colorless |
γ = 93.313 (3)° | 0.57 × 0.27 × 0.20 mm |
V = 1245.69 (6) Å3 |
Bruker Kappa APEXII CCD area-detector diffractometer | 6053 independent reflections |
Radiation source: fine-focus sealed tube | 5647 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
ϕ and ω scans | θmax = 28.4°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −9→9 |
Tmin = 0.720, Tmax = 0.810 | k = −10→10 |
21315 measured reflections | l = −30→30 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.078 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.29 | w = 1/[σ2(Fo2) + 1.9543P] where P = (Fo2 + 2Fc2)/3 |
6053 reflections | (Δ/σ)max = 0.001 |
353 parameters | Δρmax = 0.43 e Å−3 |
6 restraints | Δρmin = −0.99 e Å−3 |
[Zn(C9H10NO2)2(C6H6N2O)(H2O)2] | γ = 93.313 (3)° |
Mr = 551.91 | V = 1245.69 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.8616 (2) Å | Mo Kα radiation |
b = 8.0947 (3) Å | µ = 1.04 mm−1 |
c = 22.4953 (4) Å | T = 100 K |
α = 90.683 (2)° | 0.57 × 0.27 × 0.20 mm |
β = 92.838 (2)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 6053 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 5647 reflections with I > 2σ(I) |
Tmin = 0.720, Tmax = 0.810 | Rint = 0.021 |
21315 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 6 restraints |
wR(F2) = 0.078 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.29 | Δρmax = 0.43 e Å−3 |
6053 reflections | Δρmin = −0.99 e Å−3 |
353 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.43308 (4) | 0.52665 (3) | 0.277312 (12) | 0.00968 (7) | |
O1 | 0.6072 (2) | 0.6802 (2) | 0.33222 (7) | 0.0139 (3) | |
O2 | 0.8588 (2) | 0.5241 (2) | 0.35273 (8) | 0.0151 (3) | |
O3 | 0.3267 (2) | 0.4011 (2) | 0.19727 (7) | 0.0136 (3) | |
O4 | 0.6263 (2) | 0.5140 (2) | 0.19916 (7) | 0.0140 (3) | |
O5 | −0.3021 (2) | 1.0876 (2) | 0.23256 (8) | 0.0152 (3) | |
O6 | 0.5716 (2) | 0.3151 (2) | 0.31154 (8) | 0.0137 (3) | |
H61 | 0.683 (3) | 0.366 (4) | 0.3259 (14) | 0.034 (9)* | |
H62 | 0.605 (5) | 0.250 (4) | 0.2826 (13) | 0.043 (11)* | |
O7 | 0.2121 (2) | 0.4297 (2) | 0.32786 (8) | 0.0156 (4) | |
H71 | 0.241 (5) | 0.362 (4) | 0.3573 (12) | 0.041 (10)* | |
H72 | 0.102 (4) | 0.471 (4) | 0.3366 (15) | 0.040 (10)* | |
N1 | 0.2604 (3) | 0.7288 (2) | 0.25405 (8) | 0.0111 (4) | |
N2 | −0.0589 (3) | 1.2657 (3) | 0.20535 (10) | 0.0150 (4) | |
H21 | −0.144 (5) | 1.345 (4) | 0.2033 (14) | 0.028 (9)* | |
H22 | 0.065 (5) | 1.293 (4) | 0.1978 (14) | 0.026 (8)* | |
N3 | 1.2354 (3) | 1.2427 (2) | 0.43495 (9) | 0.0134 (4) | |
N4 | 0.5670 (4) | 0.1902 (3) | −0.06335 (10) | 0.0295 (6) | |
C1 | 0.7806 (3) | 0.6619 (3) | 0.35163 (10) | 0.0118 (4) | |
C2 | 0.8980 (3) | 0.8119 (3) | 0.37526 (10) | 0.0116 (4) | |
C3 | 1.0944 (3) | 0.8040 (3) | 0.39285 (10) | 0.0133 (4) | |
H3 | 1.1525 | 0.7032 | 0.3907 | 0.016* | |
C4 | 1.2056 (3) | 0.9437 (3) | 0.41358 (10) | 0.0137 (4) | |
H4 | 1.3366 | 0.9350 | 0.4251 | 0.016* | |
C5 | 1.1230 (3) | 1.0971 (3) | 0.41741 (10) | 0.0116 (4) | |
C6 | 0.9246 (3) | 1.1047 (3) | 0.39978 (11) | 0.0148 (5) | |
H6 | 0.8656 | 1.2049 | 0.4023 | 0.018* | |
C7 | 0.8157 (3) | 0.9653 (3) | 0.37883 (10) | 0.0138 (5) | |
H7 | 0.6850 | 0.9738 | 0.3669 | 0.017* | |
C8 | 0.4856 (3) | 0.4329 (3) | 0.17119 (10) | 0.0118 (4) | |
C9 | 0.5045 (4) | 0.3732 (3) | 0.10964 (10) | 0.0138 (5) | |
C10 | 0.3518 (4) | 0.2825 (3) | 0.07888 (11) | 0.0186 (5) | |
H10 | 0.2349 | 0.2609 | 0.0974 | 0.022* | |
C11 | 0.3696 (4) | 0.2240 (3) | 0.02182 (12) | 0.0223 (5) | |
H11 | 0.2643 | 0.1656 | 0.0022 | 0.027* | |
C12 | 0.5457 (4) | 0.2517 (3) | −0.00729 (11) | 0.0223 (6) | |
C13 | 0.6994 (4) | 0.3448 (3) | 0.02368 (12) | 0.0227 (6) | |
H13 | 0.8169 | 0.3664 | 0.0056 | 0.027* | |
C14 | 0.6774 (4) | 0.4042 (3) | 0.08049 (11) | 0.0181 (5) | |
H14 | 0.7802 | 0.4665 | 0.0999 | 0.022* | |
C15 | 0.3272 (3) | 0.8873 (3) | 0.25996 (10) | 0.0134 (5) | |
H15 | 0.4576 | 0.9101 | 0.2721 | 0.016* | |
C16 | 0.2101 (3) | 1.0188 (3) | 0.24869 (11) | 0.0138 (5) | |
H16 | 0.2620 | 1.1274 | 0.2524 | 0.017* | |
C17 | 0.0147 (3) | 0.9856 (3) | 0.23173 (10) | 0.0103 (4) | |
C18 | −0.0561 (3) | 0.8214 (3) | 0.22551 (10) | 0.0117 (4) | |
H18 | −0.1868 | 0.7952 | 0.2145 | 0.014* | |
C19 | 0.0719 (3) | 0.6980 (3) | 0.23603 (10) | 0.0120 (4) | |
H19 | 0.0254 | 0.5884 | 0.2304 | 0.014* | |
C20 | 1.1361 (4) | 1.3649 (3) | 0.46894 (11) | 0.0172 (5) | |
H20A | 1.2236 | 1.4601 | 0.4773 | 0.026* | |
H20B | 1.0964 | 1.3173 | 0.5056 | 0.026* | |
H20C | 1.0230 | 1.3975 | 0.4462 | 0.026* | |
C21 | 1.4337 (4) | 1.2219 (3) | 0.45885 (13) | 0.0240 (6) | |
H21A | 1.4981 | 1.3285 | 0.4675 | 0.036* | |
H21B | 1.5046 | 1.1645 | 0.4301 | 0.036* | |
H21C | 1.4290 | 1.1589 | 0.4947 | 0.036* | |
C22 | 0.7510 (5) | 0.2163 (4) | −0.09166 (13) | 0.0376 (8) | |
H22A | 0.7477 | 0.1513 | −0.1277 | 0.056* | |
H22B | 0.8556 | 0.1835 | −0.0652 | 0.056* | |
H22C | 0.7719 | 0.3313 | −0.1008 | 0.056* | |
C23 | 0.4016 (5) | 0.1097 (4) | −0.09693 (13) | 0.0358 (8) | |
H23A | 0.4403 | 0.0798 | −0.1359 | 0.054* | |
H23B | 0.2978 | 0.1841 | −0.1005 | 0.054* | |
H23C | 0.3572 | 0.0119 | −0.0767 | 0.054* | |
C24 | −0.1275 (3) | 1.1191 (3) | 0.22302 (10) | 0.0117 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.00962 (12) | 0.00784 (13) | 0.01170 (12) | 0.00169 (9) | 0.00048 (9) | −0.00011 (9) |
O1 | 0.0114 (8) | 0.0130 (8) | 0.0170 (8) | 0.0028 (6) | −0.0028 (6) | −0.0015 (6) |
O2 | 0.0125 (8) | 0.0096 (8) | 0.0232 (9) | 0.0023 (6) | −0.0006 (7) | −0.0010 (7) |
O3 | 0.0134 (8) | 0.0131 (8) | 0.0145 (8) | −0.0001 (6) | 0.0033 (6) | −0.0011 (6) |
O4 | 0.0138 (8) | 0.0123 (8) | 0.0156 (8) | −0.0018 (6) | −0.0003 (6) | −0.0008 (6) |
O5 | 0.0109 (8) | 0.0115 (8) | 0.0232 (9) | 0.0010 (6) | 0.0018 (7) | −0.0018 (7) |
O6 | 0.0108 (8) | 0.0128 (9) | 0.0177 (8) | 0.0020 (6) | 0.0005 (6) | 0.0000 (7) |
O7 | 0.0133 (8) | 0.0166 (9) | 0.0180 (8) | 0.0055 (7) | 0.0050 (7) | 0.0059 (7) |
N1 | 0.0113 (9) | 0.0118 (10) | 0.0102 (9) | −0.0001 (7) | 0.0011 (7) | 0.0004 (7) |
N2 | 0.0107 (10) | 0.0095 (10) | 0.0249 (11) | 0.0017 (8) | −0.0012 (8) | 0.0026 (8) |
N3 | 0.0125 (9) | 0.0118 (10) | 0.0155 (9) | 0.0011 (7) | −0.0012 (7) | −0.0021 (8) |
N4 | 0.0458 (16) | 0.0308 (14) | 0.0131 (11) | 0.0092 (12) | 0.0045 (10) | −0.0039 (9) |
C1 | 0.0141 (11) | 0.0119 (11) | 0.0096 (10) | 0.0010 (8) | 0.0016 (8) | −0.0002 (8) |
C2 | 0.0127 (11) | 0.0122 (11) | 0.0100 (10) | 0.0003 (8) | 0.0011 (8) | −0.0001 (8) |
C3 | 0.0140 (11) | 0.0104 (11) | 0.0157 (11) | 0.0027 (8) | 0.0004 (9) | 0.0006 (9) |
C4 | 0.0115 (11) | 0.0148 (12) | 0.0148 (11) | 0.0022 (9) | −0.0014 (8) | 0.0011 (9) |
C5 | 0.0140 (11) | 0.0111 (11) | 0.0097 (10) | 0.0005 (8) | 0.0004 (8) | 0.0007 (8) |
C6 | 0.0143 (11) | 0.0114 (11) | 0.0189 (11) | 0.0044 (9) | −0.0005 (9) | −0.0010 (9) |
C7 | 0.0114 (11) | 0.0143 (12) | 0.0156 (11) | 0.0024 (9) | −0.0009 (8) | −0.0008 (9) |
C8 | 0.0120 (11) | 0.0088 (11) | 0.0151 (11) | 0.0027 (8) | 0.0007 (8) | 0.0017 (8) |
C9 | 0.0170 (11) | 0.0120 (11) | 0.0126 (11) | 0.0027 (9) | 0.0009 (9) | 0.0007 (8) |
C10 | 0.0202 (13) | 0.0200 (13) | 0.0154 (12) | 0.0008 (10) | 0.0003 (9) | −0.0016 (10) |
C11 | 0.0285 (14) | 0.0203 (14) | 0.0176 (12) | 0.0024 (11) | −0.0044 (10) | −0.0039 (10) |
C12 | 0.0370 (16) | 0.0181 (13) | 0.0128 (11) | 0.0090 (11) | 0.0020 (10) | 0.0007 (10) |
C13 | 0.0274 (14) | 0.0234 (14) | 0.0186 (12) | 0.0053 (11) | 0.0093 (10) | 0.0029 (10) |
C14 | 0.0213 (13) | 0.0170 (13) | 0.0162 (11) | 0.0013 (10) | 0.0035 (9) | 0.0008 (9) |
C15 | 0.0113 (11) | 0.0123 (11) | 0.0166 (11) | −0.0003 (8) | −0.0003 (8) | 0.0031 (9) |
C16 | 0.0128 (11) | 0.0094 (11) | 0.0190 (11) | −0.0002 (8) | 0.0004 (9) | 0.0009 (9) |
C17 | 0.0113 (10) | 0.0097 (11) | 0.0103 (10) | 0.0021 (8) | 0.0018 (8) | 0.0004 (8) |
C18 | 0.0102 (10) | 0.0116 (11) | 0.0131 (10) | 0.0008 (8) | 0.0006 (8) | −0.0004 (8) |
C19 | 0.0141 (11) | 0.0079 (11) | 0.0136 (10) | −0.0015 (8) | −0.0001 (8) | −0.0009 (8) |
C20 | 0.0220 (13) | 0.0149 (12) | 0.0148 (11) | 0.0026 (9) | 0.0013 (9) | −0.0029 (9) |
C21 | 0.0171 (13) | 0.0168 (13) | 0.0372 (16) | 0.0029 (10) | −0.0089 (11) | −0.0057 (11) |
C22 | 0.056 (2) | 0.043 (2) | 0.0170 (14) | 0.0158 (16) | 0.0132 (14) | −0.0017 (13) |
C23 | 0.057 (2) | 0.0350 (18) | 0.0164 (13) | 0.0177 (16) | −0.0076 (13) | −0.0072 (12) |
C24 | 0.0120 (11) | 0.0103 (11) | 0.0127 (10) | 0.0013 (8) | −0.0004 (8) | −0.0023 (8) |
Zn1—O1 | 2.0353 (17) | C7—C6 | 1.381 (3) |
Zn1—O3 | 2.1328 (17) | C7—H7 | 0.9300 |
Zn1—O4 | 2.2584 (17) | C9—C8 | 1.475 (3) |
Zn1—O6 | 2.1393 (17) | C9—C10 | 1.394 (3) |
Zn1—O7 | 2.0647 (17) | C9—C14 | 1.395 (3) |
Zn1—N1 | 2.1307 (19) | C10—C11 | 1.376 (4) |
Zn1—C8 | 2.545 (2) | C10—H10 | 0.9300 |
O1—C1 | 1.265 (3) | C11—H11 | 0.9300 |
O2—C1 | 1.265 (3) | C12—C11 | 1.410 (4) |
O3—C8 | 1.278 (3) | C13—C12 | 1.410 (4) |
O4—C8 | 1.271 (3) | C13—H13 | 0.9300 |
O5—C24 | 1.240 (3) | C14—C13 | 1.378 (4) |
O6—H61 | 0.891 (17) | C14—H14 | 0.9300 |
O6—H62 | 0.879 (19) | C15—C16 | 1.389 (3) |
O7—H71 | 0.89 (3) | C15—H15 | 0.9300 |
O7—H72 | 0.875 (18) | C16—C17 | 1.386 (3) |
N1—C15 | 1.340 (3) | C16—H16 | 0.9300 |
N1—C19 | 1.345 (3) | C18—C17 | 1.392 (3) |
N2—H21 | 0.89 (3) | C18—C19 | 1.382 (3) |
N2—H22 | 0.89 (3) | C18—H18 | 0.9300 |
N3—C5 | 1.412 (3) | C19—H19 | 0.9300 |
N3—C20 | 1.463 (3) | C20—H20A | 0.9600 |
N3—C21 | 1.458 (3) | C20—H20B | 0.9600 |
N4—C12 | 1.368 (3) | C20—H20C | 0.9600 |
N4—C22 | 1.448 (4) | C21—H21A | 0.9600 |
N4—C23 | 1.449 (4) | C21—H21B | 0.9600 |
C1—C2 | 1.495 (3) | C21—H21C | 0.9600 |
C3—C2 | 1.391 (3) | C22—H22A | 0.9600 |
C3—C4 | 1.389 (3) | C22—H22B | 0.9600 |
C3—H3 | 0.9300 | C22—H22C | 0.9600 |
C4—C5 | 1.398 (3) | C23—H23A | 0.9600 |
C4—H4 | 0.9300 | C23—H23B | 0.9600 |
C5—C6 | 1.404 (3) | C23—H23C | 0.9600 |
C6—H6 | 0.9300 | C24—N2 | 1.325 (3) |
C7—C2 | 1.396 (3) | C24—C17 | 1.505 (3) |
O1—Zn1—O3 | 158.68 (7) | C10—C9—C8 | 121.4 (2) |
O1—Zn1—O4 | 99.43 (6) | C10—C9—C14 | 117.7 (2) |
O1—Zn1—O6 | 91.08 (7) | C14—C9—C8 | 120.9 (2) |
O1—Zn1—O7 | 106.57 (7) | C9—C10—H10 | 119.2 |
O1—Zn1—N1 | 89.59 (7) | C11—C10—C9 | 121.6 (2) |
O3—Zn1—O4 | 60.03 (6) | C11—C10—H10 | 119.2 |
O3—Zn1—O6 | 93.40 (7) | C10—C11—C12 | 120.8 (3) |
O6—Zn1—O4 | 87.44 (6) | C10—C11—H11 | 119.6 |
O7—Zn1—O3 | 94.72 (7) | C12—C11—H11 | 119.6 |
O7—Zn1—O4 | 151.55 (7) | N4—C12—C11 | 121.4 (3) |
O7—Zn1—O6 | 80.80 (7) | N4—C12—C13 | 121.2 (3) |
O7—Zn1—N1 | 89.90 (7) | C11—C12—C13 | 117.4 (2) |
N1—Zn1—O3 | 89.40 (7) | C12—C13—H13 | 119.6 |
N1—Zn1—O4 | 101.82 (7) | C14—C13—C12 | 120.8 (2) |
N1—Zn1—O6 | 170.47 (7) | C14—C13—H13 | 119.6 |
C1—O1—Zn1 | 128.40 (15) | C9—C14—H14 | 119.2 |
C8—O3—Zn1 | 93.10 (14) | C13—C14—C9 | 121.6 (3) |
C8—O4—Zn1 | 87.63 (13) | C13—C14—H14 | 119.2 |
Zn1—O6—H61 | 98 (2) | N1—C15—C16 | 122.8 (2) |
Zn1—O6—H62 | 111 (2) | N1—C15—H15 | 118.6 |
H61—O6—H62 | 106 (3) | C16—C15—H15 | 118.6 |
Zn1—O7—H71 | 119 (2) | C15—C16—H16 | 120.6 |
Zn1—O7—H72 | 130 (2) | C17—C16—C15 | 118.9 (2) |
H72—O7—H71 | 106 (2) | C17—C16—H16 | 120.6 |
C15—N1—Zn1 | 123.02 (16) | C16—C17—C18 | 118.7 (2) |
C15—N1—C19 | 117.8 (2) | C16—C17—C24 | 122.9 (2) |
C19—N1—Zn1 | 119.03 (16) | C18—C17—C24 | 118.3 (2) |
C24—N2—H21 | 116 (2) | C17—C18—H18 | 120.7 |
C24—N2—H22 | 126 (2) | C19—C18—C17 | 118.6 (2) |
H22—N2—H21 | 118 (3) | C19—C18—H18 | 120.7 |
C5—N3—C21 | 116.7 (2) | N1—C19—C18 | 123.1 (2) |
C5—N3—C20 | 116.3 (2) | N1—C19—H19 | 118.4 |
C21—N3—C20 | 112.2 (2) | C18—C19—H19 | 118.4 |
C12—N4—C22 | 120.3 (3) | N3—C20—H20A | 109.5 |
C12—N4—C23 | 120.4 (3) | N3—C20—H20B | 109.5 |
C22—N4—C23 | 119.1 (2) | N3—C20—H20C | 109.5 |
O1—C1—O2 | 123.7 (2) | H20A—C20—H20B | 109.5 |
O1—C1—C2 | 117.7 (2) | H20A—C20—H20C | 109.5 |
O2—C1—C2 | 118.5 (2) | H20B—C20—H20C | 109.5 |
C3—C2—C1 | 121.0 (2) | N3—C21—H21A | 109.5 |
C3—C2—C7 | 117.9 (2) | N3—C21—H21B | 109.5 |
C7—C2—C1 | 121.2 (2) | N3—C21—H21C | 109.5 |
C2—C3—H3 | 119.4 | H21A—C21—H21B | 109.5 |
C4—C3—C2 | 121.3 (2) | H21A—C21—H21C | 109.5 |
C4—C3—H3 | 119.4 | H21B—C21—H21C | 109.5 |
C3—C4—C5 | 120.9 (2) | N4—C22—H22A | 109.5 |
C3—C4—H4 | 119.6 | N4—C22—H22B | 109.5 |
C5—C4—H4 | 119.6 | N4—C22—H22C | 109.5 |
C4—C5—N3 | 122.0 (2) | H22A—C22—H22B | 109.5 |
C4—C5—C6 | 117.7 (2) | H22A—C22—H22C | 109.5 |
C6—C5—N3 | 120.2 (2) | H22B—C22—H22C | 109.5 |
C5—C6—H6 | 119.5 | N4—C23—H23A | 109.5 |
C7—C6—C5 | 121.0 (2) | N4—C23—H23B | 109.5 |
C7—C6—H6 | 119.5 | N4—C23—H23C | 109.5 |
C2—C7—H7 | 119.3 | H23A—C23—H23B | 109.5 |
C6—C7—C2 | 121.3 (2) | H23A—C23—H23C | 109.5 |
C6—C7—H7 | 119.3 | H23B—C23—H23C | 109.5 |
O3—C8—C9 | 119.8 (2) | O5—C24—N2 | 123.0 (2) |
O4—C8—O3 | 119.2 (2) | O5—C24—C17 | 119.1 (2) |
O4—C8—C9 | 121.0 (2) | N2—C24—C17 | 117.9 (2) |
O3—Zn1—O1—C1 | −71.5 (3) | C23—N4—C12—C13 | −173.5 (3) |
O4—Zn1—O1—C1 | −56.9 (2) | O1—C1—C2—C3 | −174.7 (2) |
O6—Zn1—O1—C1 | 30.69 (19) | O1—C1—C2—C7 | 3.5 (3) |
O7—Zn1—O1—C1 | 111.42 (19) | O2—C1—C2—C3 | 6.0 (3) |
N1—Zn1—O1—C1 | −158.81 (19) | O2—C1—C2—C7 | −175.8 (2) |
O1—Zn1—O3—C8 | 16.4 (2) | C4—C3—C2—C1 | 178.5 (2) |
O4—Zn1—O3—C8 | −0.36 (12) | C4—C3—C2—C7 | 0.3 (3) |
O6—Zn1—O3—C8 | −85.43 (13) | C2—C3—C4—C5 | 0.0 (4) |
O7—Zn1—O3—C8 | −166.47 (13) | C3—C4—C5—N3 | −176.2 (2) |
N1—Zn1—O3—C8 | 103.68 (13) | C3—C4—C5—C6 | 0.2 (3) |
O1—Zn1—O4—C8 | −173.56 (13) | N3—C5—C6—C7 | 175.8 (2) |
O3—Zn1—O4—C8 | 0.36 (12) | C4—C5—C6—C7 | −0.7 (3) |
O6—Zn1—O4—C8 | 95.77 (13) | C6—C7—C2—C1 | −179.0 (2) |
O7—Zn1—O4—C8 | 30.5 (2) | C6—C7—C2—C3 | −0.8 (3) |
N1—Zn1—O4—C8 | −81.99 (13) | C2—C7—C6—C5 | 1.0 (4) |
O1—Zn1—N1—C15 | 22.18 (18) | C10—C9—C8—O3 | 0.2 (3) |
O1—Zn1—N1—C19 | −153.57 (17) | C10—C9—C8—O4 | 179.2 (2) |
O3—Zn1—N1—C15 | −136.52 (18) | C14—C9—C8—O3 | −179.1 (2) |
O3—Zn1—N1—C19 | 47.73 (17) | C14—C9—C8—O4 | −0.1 (3) |
O4—Zn1—N1—C19 | 106.89 (17) | C8—C9—C10—C11 | −178.9 (2) |
O4—Zn1—N1—C15 | −77.36 (18) | C14—C9—C10—C11 | 0.4 (4) |
O7—Zn1—N1—C15 | 128.76 (18) | C8—C9—C14—C13 | 178.0 (2) |
O7—Zn1—N1—C19 | −46.99 (17) | C10—C9—C14—C13 | −1.3 (4) |
Zn1—O1—C1—O2 | −19.5 (3) | C9—C10—C11—C12 | 1.1 (4) |
Zn1—O1—C1—C2 | 161.36 (15) | N4—C12—C11—C10 | 178.1 (3) |
Zn1—O3—C8—O4 | 0.6 (2) | C13—C12—C11—C10 | −1.7 (4) |
Zn1—O3—C8—C9 | 179.65 (18) | C14—C13—C12—N4 | −179.0 (2) |
Zn1—O4—C8—O3 | −0.6 (2) | C14—C13—C12—C11 | 0.8 (4) |
Zn1—O4—C8—C9 | −179.61 (19) | C9—C14—C13—C12 | 0.8 (4) |
Zn1—N1—C15—C16 | −175.38 (17) | N1—C15—C16—C17 | 1.3 (4) |
C19—N1—C15—C16 | 0.4 (3) | C15—C16—C17—C18 | −1.2 (3) |
Zn1—N1—C19—C18 | 173.64 (17) | C15—C16—C17—C24 | 175.2 (2) |
C15—N1—C19—C18 | −2.3 (3) | C19—C18—C17—C16 | −0.5 (3) |
C20—N3—C5—C4 | −146.3 (2) | C19—C18—C17—C24 | −177.2 (2) |
C20—N3—C5—C6 | 37.4 (3) | C17—C18—C19—N1 | 2.4 (3) |
C21—N3—C5—C4 | −10.4 (3) | O5—C24—C17—C16 | −150.0 (2) |
C21—N3—C5—C6 | 173.4 (2) | O5—C24—C17—C18 | 26.5 (3) |
C22—N4—C12—C11 | −178.3 (3) | N2—C24—C17—C16 | 30.0 (3) |
C22—N4—C12—C13 | 1.5 (4) | N2—C24—C17—C18 | −153.5 (2) |
C23—N4—C12—C11 | 6.7 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H21···O4i | 0.89 (3) | 2.15 (3) | 3.034 (3) | 174 (3) |
N2—H22···O3ii | 0.89 (3) | 1.95 (3) | 2.820 (3) | 164 (3) |
O6—H61···O2 | 0.89 (3) | 1.79 (3) | 2.646 (2) | 161 (3) |
O6—H62···O5iii | 0.88 (3) | 1.88 (3) | 2.749 (2) | 169 (3) |
O7—H71···N3iv | 0.89 (3) | 2.01 (3) | 2.863 (3) | 162 (3) |
O7—H72···O2v | 0.87 (3) | 1.80 (3) | 2.667 (2) | 171 (3) |
C22—H22A···Cg3vi | 0.96 | 2.74 | 3.567 (3) | 145 |
C23—H23C···Cg2vii | 0.96 | 2.86 | 3.644 (3) | 140 |
Symmetry codes: (i) x−1, y+1, z; (ii) x, y+1, z; (iii) x+1, y−1, z; (iv) x−1, y−1, z; (v) x−1, y, z; (vi) −x+1, −y+1, −z; (vii) −x+1, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C9H10NO2)2(C6H6N2O)(H2O)2] |
Mr | 551.91 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 6.8616 (2), 8.0947 (3), 22.4953 (4) |
α, β, γ (°) | 90.683 (2), 92.838 (2), 93.313 (3) |
V (Å3) | 1245.69 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.04 |
Crystal size (mm) | 0.57 × 0.27 × 0.20 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.720, 0.810 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21315, 6053, 5647 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.078, 1.29 |
No. of reflections | 6053 |
No. of parameters | 353 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.43, −0.99 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Zn1—O1 | 2.0353 (17) | Zn1—O6 | 2.1393 (17) |
Zn1—O3 | 2.1328 (17) | Zn1—O7 | 2.0647 (17) |
Zn1—O4 | 2.2584 (17) | Zn1—N1 | 2.1307 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H21···O4i | 0.89 (3) | 2.15 (3) | 3.034 (3) | 174 (3) |
N2—H22···O3ii | 0.89 (3) | 1.95 (3) | 2.820 (3) | 164 (3) |
O6—H61···O2 | 0.89 (3) | 1.79 (3) | 2.646 (2) | 161 (3) |
O6—H62···O5iii | 0.88 (3) | 1.88 (3) | 2.749 (2) | 169 (3) |
O7—H71···N3iv | 0.89 (3) | 2.01 (3) | 2.863 (3) | 162 (3) |
O7—H72···O2v | 0.87 (3) | 1.80 (3) | 2.667 (2) | 171 (3) |
C22—H22A···Cg3vi | 0.96 | 2.74 | 3.567 (3) | 145 |
C23—H23C···Cg2vii | 0.96 | 2.86 | 3.644 (3) | 140 |
Symmetry codes: (i) x−1, y+1, z; (ii) x, y+1, z; (iii) x+1, y−1, z; (iv) x−1, y−1, z; (v) x−1, y, z; (vi) −x+1, −y+1, −z; (vii) −x+1, −y, −z. |
Acknowledgements
The authors are indebted to Anadolu University and Medicinal Plants and Medicine Research Centre of Anadolu University, Eskişehir, Turkey, for the use of X-ray diffractometer.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Nicotinamide (NA) is one form of niacin. A deficiency of this vitamin leads to loss of copper from the body, known as pellagra disease. Victims of pellagra show unusually high serum and urinary copper levels (Krishnamachari, 1974). The nicotinic acid derivative N,N-Diethylnicotinamide (DENA) is an important respiratory stimulant (Bigoli et al., 1972). Transition metal complexes with biochemical molecules show interesting physical and/or chemical properties, through which they may find applications in biological systems (Antolini et al., 1982). Some benzoic acid derivatives, such as 4-aminobenzoic acid, have been extensively reported in coordination chemistry, as bifunctional organic ligands, due to the varieties of their coordination modes (Chen & Chen, 2002; Amiraslanov et al., 1979; Hauptmann et al., 2000).
The structure-function-coordination relationships of the arylcarboxylate ion in ZnII complexes of benzoic acid derivatives may also change depending on the nature and position of the substituted groups on the benzene ring, the nature of the additional ligand molecule or solvent, and the pH and temperature of synthesis (Shnulin et al., 1981; Antsyshkina et al., 1980; Adiwidjaja et al., 1978). When pyridine and its derivatives are used instead of water molecules, the structure is completely different (Catterick et al., 1974).
The structure determination of the title compound, (I), a zinc complex with two 4-dimethylaminobenzoate (DMAB) and one isonicotinamide (INA) ligands and two water molecules, was undertaken in order to determine the properties of the ligands and also to compare the results obtained with those reported previously.
In the monomeric title complex, (I), the Zn atom is surrounded by two DMAB and INA ligands and two water molecules. One of the DMAB ions acts as a bidentate ligand, while the other and INA are monodentate ligands (Fig. 1). The four O atoms (O1, O3, O4 and O7 atoms) in the equatorial plane around the Zn atom form a highly distorted square-planar arrangement, while the distorted octahedral coordination is completed by the N atom of the INA ligand (N1) and the O atom of the water molecule (O6) in the axial positions (Table 1 and Fig. 1).
The near equality of the C1—O1 [1.265 (3) Å], C1—O2 [1.265 (3) Å], C8—O3 [1.278 (3) Å] and C8—O4 [1.271 (3) Å], bonds in the carboxylate group indicates a delocalized bonding arrangement, rather than localized single and double bonds, and may be compared with the corresponding distances: 1.256 (6) and 1.245 (6) Å in [Mn(DENA)2(C7H4ClO2)2(H2O)2], (II) (Hökelek et al., 2008), 1.265 (6) and 1.275 (6) Å in [Mn(C9H10NO2)2(H2O)4]. 2(H2O), (III) (Hökelek & Necefoğlu, 2007), 1.260 (4) and 1.252 (4) Å in [Zn(DENA)2(C7H4FO2)2(H2O)2],(IV) (Hökelek et al., 2007), 1.259 (9) and 1.273 (9) Å in Cu2(DENA)2(C6H5COO)4, (V) (Hökelek et al., 1995), 1.279 (4) and 1.246 (4) Å in [Zn2(DENA)2(C7H5O3)4]. 2H2O, (VI) (Hökelek & Necefoğlu, 1996), 1.251 (6) and 1.254 (7) Å in [Co(DENA)2(C7H5O3)2(H2O)2], (VII) (Hökelek & Necefoğlu, 1997) and 1.278 (3) and 1.246 (3) Å in [Cu(DENA)2(C7H4NO4)2(H2O)2], (VIII) (Hökelek et al., 1997). In (I), the average Zn—O bond length is 2.1261 (17) Å and the Zn atom is displaced out of the least-squares planes of the carboxylate groups (O1/C1/O2) and (O3/C8/O4) by -0.531 (1) Å and 0.023 (3) Å, respectively. The dihedral angle between the planar carboxylate groups and the adjacent benzene rings A (C2—C7) and B (C9—C14) are 4.87 (16)° and 2.23 (21)°, respectively, while those between rings A, B and C (N1/C15—C19) are A/B = 65.13 (8), A/C = 11.47 (7) and B/C = 74.83 (8) °. Intramolecular C—H···O hydrogen bond (Table 2) results in the formation of a six-membered ring D (Zn1/O1/O2/O6/C1/H61) adopting envelope conformation, with atom Zn1 displaced by 0.610 (1) Å from the plane of the other ring atoms. In (I), the O3—Zn1—O4 angle is 60.03 (6)°. The corresponding O—M—O (where M is a metal) angles are 58.3 (3)° in (VI) and 55.2 (1)° in [Cu(Asp)2(py)2] (where Asp is acetylsalicylate and py is pyridine) [(IX); Greenaway et al., 1984].
In the crystal structure, strong intermolecular O—H···O, O—H···N and N—H···O hydrogen bonds (Table 2) link the molecules into a supramolecular structure, in which they may be effective in the stabilization of the structure. The π–π contacts between the pyridine and the benzene rings and the benzene rings, Cg1—Cg3i and Cg2···Cg2ii [symmetry codes: (i) x - 1, y, z, (ii) 1 - x, 1 - y, -z, where Cg1, Cg2 and Cg3 are centroids of the rings A (C2—C7), B (C9—C14) and C (N1/C15—C19), respectively] may further stabilize the structure, with centroid-centroid distances of 3.695 (1) and 3.841 (1) Å, respectively. There also exist two weak C—H···π interactions (Table 1).