metal-organic compounds
A new polymorph of catena-poly[[triaquacadmium(II)]-μ2-pyrazine-2,3-dicarboxylato]
aInstrumental Measurement and Analysis Center, Fuzhou University, Fuzhou, Fujian 350002, People's Republic of China
*Correspondence e-mail: yyh_shd@fzu.edu.cn
The title complex, [Cd(C6H2N2O4)(H2O)3]n, is a new monoclinic polymorph. The orthorhombic form has previously been reported [Ma et al. (2006). Acta Cryst. E62, m2528–m2529]. The Cd—N and Cd—O bond lengths range from 2.265 (3) to 2.333 (3) Å; a weak Cd—O interaction is also present, the interatomic distance being 2.658 (4) Å. The CdII ions, which have a distorted pentagonal-bipyramidal geometry, are bridged by pyrazine-2,3-dicarboxylato ligands, forming a zigzag chain structure. The chains are connected by O—H⋯O hydrogen bonds into a three-dimensional framework.
Related literature
For the orthorhombic polymorph, see: Ma et al. (2006). For general background and related structures, see: Mao et al. (1996); Kitaura et al. (2002); Maji et al. (2004); Yin & Liu (2007, 2009).
Experimental
Crystal data
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Refinement
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Data collection: TEXRAY (Molecular Structure Corporation, 1999); cell TEXRAY; data reduction: TEXSAN (Molecular Structure Corporation, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEX (McArdle, 1995); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809028268/bt5003sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809028268/bt5003Isup2.hkl
By adding an aqueous solution of Cd(OAc)2 (0.1 mmol) into an aqueous solution of pzdcH2(0.1 mmol) and 1,2,4-triazol (0.1 mmol), the resulting mixture was stirred for 2 min and filtered immediately. The colorless crystals of the title compound I were isolated after slow evaporation for 3 days. Yield: ca43% based on Cd. Anal. Calcd for C6H8N2O7Cd: C, 21.65, H, 2.41, N, 8.42; found: C, 21.58, H, 2.36, N, 8.53.
H atoms of water molecules were located in difference Fourier maps and were then constrained to ride on their parent atoms, with Uiso(H) = 1.5Ueq(O). Other H atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93Å and Uiso(H) = 1.2Ueq(C). The water H atoms were refined with distance restraints of O-H 0.86 (2)Å and H-H = 1.38 (2)Å.
Data collection: TEXRAY (Molecular Structure Corporation, 1999); cell
TEXRAY (Molecular Structure Corporation, 1999); data reduction: TEXSAN (Molecular Structure Corporation, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEX (McArdle, 1995); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. View of the title compound, showing 30% probability displacement ellipsoids. H atoms have been omitted for clarity. [Symmetry code: (i) -x + 1/2, y + 1/2, -z + 1/2.] |
[Cd(C6H2N2O4)(H2O)3] | F(000) = 648 |
Mr = 332.54 | Dx = 2.324 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4538 reflections |
a = 5.586 (6) Å | θ = 3.2–27.5° |
b = 15.748 (9) Å | µ = 2.32 mm−1 |
c = 10.832 (6) Å | T = 293 K |
β = 93.94 (3)° | Block, colourless |
V = 950.5 (12) Å3 | 0.25 × 0.23 × 0.18 mm |
Z = 4 |
Weissenberg IP diffractometer | 2129 independent reflections |
Radiation source: rotor target | 1699 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
ω scans | θmax = 27.5°, θmin = 3.2° |
Absorption correction: multi-scan (TEXRAY; Molecular Structure Corporation, 1999) | h = −7→5 |
Tmin = 0.668, Tmax = 1.000 | k = −19→20 |
5659 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.074 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0366P)2 + 0.562P] where P = (Fo2 + 2Fc2)/3 |
2129 reflections | (Δ/σ)max < 0.001 |
145 parameters | Δρmax = 0.82 e Å−3 |
9 restraints | Δρmin = −0.53 e Å−3 |
[Cd(C6H2N2O4)(H2O)3] | V = 950.5 (12) Å3 |
Mr = 332.54 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 5.586 (6) Å | µ = 2.32 mm−1 |
b = 15.748 (9) Å | T = 293 K |
c = 10.832 (6) Å | 0.25 × 0.23 × 0.18 mm |
β = 93.94 (3)° |
Weissenberg IP diffractometer | 2129 independent reflections |
Absorption correction: multi-scan (TEXRAY; Molecular Structure Corporation, 1999) | 1699 reflections with I > 2σ(I) |
Tmin = 0.668, Tmax = 1.000 | Rint = 0.032 |
5659 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 9 restraints |
wR(F2) = 0.074 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.82 e Å−3 |
2129 reflections | Δρmin = −0.53 e Å−3 |
145 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.07189 (6) | 0.372955 (14) | 0.31158 (2) | 0.02540 (10) | |
O1 | 0.3289 (6) | 0.28668 (14) | 0.2181 (2) | 0.0294 (6) | |
O2 | 0.4160 (6) | 0.15343 (17) | 0.1696 (2) | 0.0319 (7) | |
O3 | 0.3399 (7) | −0.01740 (17) | 0.3172 (3) | 0.0434 (8) | |
O4 | 0.1098 (7) | −0.00334 (19) | 0.1449 (3) | 0.0475 (9) | |
O1W | 0.2872 (7) | 0.34613 (18) | 0.5126 (2) | 0.0374 (7) | |
H1WA | 0.3989 | 0.3785 | 0.5318 | 0.056* | |
H1WB | 0.1887 | 0.3401 | 0.5663 | 0.056* | |
O2W | −0.2530 (6) | 0.37407 (15) | 0.1551 (3) | 0.0358 (7) | |
H2WA | −0.3683 | 0.3410 | 0.1640 | 0.054* | |
H2WB | −0.3071 | 0.4212 | 0.1323 | 0.054* | |
O3W | −0.1846 (8) | 0.4335 (2) | 0.4320 (3) | 0.0583 (11) | |
H3WA | −0.3095 | 0.4581 | 0.4013 | 0.088* | |
H3WB | −0.1945 | 0.4277 | 0.5076 | 0.088* | |
N1 | −0.0445 (7) | 0.23327 (16) | 0.3472 (3) | 0.0218 (7) | |
N2 | −0.1324 (7) | 0.06150 (18) | 0.3781 (3) | 0.0253 (7) | |
C1 | 0.0905 (7) | 0.17535 (19) | 0.2954 (3) | 0.0194 (7) | |
C2 | 0.0436 (7) | 0.0893 (2) | 0.3109 (3) | 0.0195 (7) | |
C3 | −0.2626 (8) | 0.1201 (2) | 0.4287 (3) | 0.0269 (8) | |
H3A | −0.3866 | 0.1031 | 0.4763 | 0.032* | |
C4 | −0.2215 (8) | 0.2060 (2) | 0.4137 (3) | 0.0242 (8) | |
H4A | −0.3187 | 0.2453 | 0.4505 | 0.029* | |
C5 | 0.2939 (8) | 0.2074 (2) | 0.2211 (3) | 0.0216 (7) | |
C6 | 0.1817 (9) | 0.0189 (2) | 0.2531 (4) | 0.0279 (9) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.02614 (19) | 0.01735 (14) | 0.03381 (15) | 0.00158 (10) | 0.00999 (10) | 0.00080 (10) |
O1 | 0.029 (2) | 0.0203 (10) | 0.0414 (13) | −0.0017 (11) | 0.0180 (12) | −0.0012 (10) |
O2 | 0.027 (2) | 0.0258 (12) | 0.0445 (15) | −0.0003 (11) | 0.0184 (13) | −0.0045 (11) |
O3 | 0.043 (3) | 0.0278 (13) | 0.0605 (19) | 0.0147 (14) | 0.0148 (16) | 0.0078 (13) |
O4 | 0.044 (3) | 0.0526 (17) | 0.0482 (16) | −0.0186 (16) | 0.0185 (15) | −0.0300 (14) |
O1W | 0.034 (2) | 0.0431 (14) | 0.0351 (14) | −0.0041 (13) | 0.0042 (12) | 0.0050 (12) |
O2W | 0.031 (2) | 0.0274 (12) | 0.0480 (15) | −0.0044 (12) | −0.0024 (13) | 0.0038 (11) |
O3W | 0.053 (3) | 0.089 (3) | 0.0332 (14) | 0.035 (2) | 0.0059 (15) | −0.0104 (16) |
N1 | 0.023 (2) | 0.0185 (12) | 0.0247 (13) | −0.0002 (11) | 0.0056 (12) | −0.0004 (11) |
N2 | 0.026 (2) | 0.0217 (13) | 0.0280 (14) | −0.0012 (12) | 0.0035 (13) | 0.0010 (11) |
C1 | 0.022 (2) | 0.0166 (14) | 0.0198 (14) | 0.0019 (13) | −0.0002 (13) | −0.0009 (12) |
C2 | 0.017 (2) | 0.0188 (14) | 0.0233 (14) | 0.0010 (13) | 0.0038 (13) | 0.0013 (12) |
C3 | 0.024 (2) | 0.0299 (17) | 0.0273 (16) | −0.0027 (15) | 0.0085 (14) | −0.0003 (14) |
C4 | 0.022 (2) | 0.0262 (16) | 0.0253 (15) | 0.0031 (14) | 0.0095 (14) | −0.0030 (13) |
C5 | 0.021 (2) | 0.0202 (14) | 0.0236 (14) | 0.0020 (14) | 0.0031 (14) | −0.0020 (13) |
C6 | 0.025 (3) | 0.0163 (14) | 0.044 (2) | −0.0037 (15) | 0.0156 (17) | −0.0055 (15) |
Cd1—O3W | 2.218 (3) | O2W—H2WB | 0.8324 |
Cd1—O1 | 2.265 (3) | O3W—H3WA | 0.8463 |
Cd1—O3i | 2.294 (3) | O3W—H3WB | 0.8295 |
Cd1—N1 | 2.334 (3) | N1—C1 | 1.332 (4) |
Cd1—O2W | 2.397 (4) | N1—C4 | 1.334 (5) |
Cd1—O1W | 2.451 (3) | N2—C3 | 1.317 (5) |
O1—C5 | 1.265 (4) | N2—C2 | 1.337 (5) |
O2—C5 | 1.245 (4) | C1—C2 | 1.393 (5) |
O3—C6 | 1.226 (6) | C1—C5 | 1.522 (5) |
O3—Cd1ii | 2.294 (3) | C2—C6 | 1.510 (5) |
O4—C6 | 1.262 (5) | C3—C4 | 1.384 (5) |
O1W—H1WA | 0.8214 | C3—H3A | 0.9300 |
O1W—H1WB | 0.8327 | C4—H4A | 0.9300 |
O2W—H2WA | 0.8385 | ||
O3W—Cd1—O1 | 167.27 (11) | Cd1—O3W—H3WB | 128.5 |
O3W—Cd1—O3i | 102.02 (13) | H3WA—O3W—H3WB | 109.3 |
O1—Cd1—O3i | 90.61 (11) | C1—N1—C4 | 118.0 (3) |
O3W—Cd1—N1 | 96.29 (14) | C1—N1—Cd1 | 113.8 (2) |
O1—Cd1—N1 | 72.59 (11) | C4—N1—Cd1 | 128.2 (2) |
O3i—Cd1—N1 | 152.11 (10) | C3—N2—C2 | 116.5 (3) |
O3W—Cd1—O2W | 85.67 (14) | N1—C1—C2 | 119.9 (3) |
O1—Cd1—O2W | 99.25 (12) | N1—C1—C5 | 117.4 (3) |
O3i—Cd1—O2W | 75.44 (12) | C2—C1—C5 | 122.6 (3) |
N1—Cd1—O2W | 85.28 (11) | N2—C2—C1 | 122.4 (3) |
O3W—Cd1—O1W | 81.30 (13) | N2—C2—C6 | 113.7 (3) |
O1—Cd1—O1W | 90.37 (12) | C1—C2—C6 | 124.0 (3) |
O3i—Cd1—O1W | 123.85 (12) | N2—C3—C4 | 122.4 (4) |
N1—Cd1—O1W | 79.40 (11) | N2—C3—H3A | 118.8 |
O2W—Cd1—O1W | 158.60 (11) | C4—C3—H3A | 118.8 |
C5—O1—Cd1 | 118.5 (2) | N1—C4—C3 | 120.9 (3) |
C6—O3—Cd1ii | 100.6 (2) | N1—C4—H4A | 119.6 |
Cd1—O1W—H1WA | 115.8 | C3—C4—H4A | 119.6 |
Cd1—O1W—H1WB | 109.4 | O2—C5—O1 | 124.9 (3) |
H1WA—O1W—H1WB | 114.9 | O2—C5—C1 | 117.5 (3) |
Cd1—O2W—H2WA | 117.7 | O1—C5—C1 | 117.6 (3) |
Cd1—O2W—H2WB | 117.3 | O3—C6—O4 | 124.5 (4) |
H2WA—O2W—H2WB | 108.8 | O3—C6—C2 | 118.4 (3) |
Cd1—O3W—H3WA | 120.9 | O4—C6—C2 | 116.7 (4) |
O3W—Cd1—O1—C5 | 32.7 (8) | N1—C1—C2—N2 | −0.9 (6) |
O3i—Cd1—O1—C5 | −154.6 (3) | C5—C1—C2—N2 | 178.7 (3) |
N1—Cd1—O1—C5 | 2.8 (3) | N1—C1—C2—C6 | 178.3 (3) |
O2W—Cd1—O1—C5 | −79.2 (3) | C5—C1—C2—C6 | −2.1 (6) |
O1W—Cd1—O1—C5 | 81.6 (3) | C2—N2—C3—C4 | 0.1 (6) |
O3W—Cd1—N1—C1 | −174.6 (3) | C1—N1—C4—C3 | 0.3 (6) |
O1—Cd1—N1—C1 | −0.9 (2) | Cd1—N1—C4—C3 | −178.0 (3) |
O3i—Cd1—N1—C1 | 54.4 (4) | N2—C3—C4—N1 | −0.5 (6) |
O2W—Cd1—N1—C1 | 100.3 (3) | Cd1—O1—C5—O2 | 177.2 (3) |
O1W—Cd1—N1—C1 | −94.7 (3) | Cd1—O1—C5—C1 | −4.1 (4) |
O3W—Cd1—N1—C4 | 3.8 (4) | N1—C1—C5—O2 | −178.0 (3) |
O1—Cd1—N1—C4 | 177.4 (4) | C2—C1—C5—O2 | 2.4 (5) |
O3i—Cd1—N1—C4 | −127.3 (3) | N1—C1—C5—O1 | 3.3 (5) |
O2W—Cd1—N1—C4 | −81.3 (3) | C2—C1—C5—O1 | −176.4 (4) |
O1W—Cd1—N1—C4 | 83.7 (3) | Cd1ii—O3—C6—O4 | −2.1 (5) |
C4—N1—C1—C2 | 0.4 (5) | Cd1ii—O3—C6—C2 | 171.1 (3) |
Cd1—N1—C1—C2 | 178.9 (3) | N2—C2—C6—O3 | −81.2 (5) |
C4—N1—C1—C5 | −179.2 (3) | C1—C2—C6—O3 | 99.6 (5) |
Cd1—N1—C1—C5 | −0.7 (4) | N2—C2—C6—O4 | 92.5 (4) |
C3—N2—C2—C1 | 0.6 (6) | C1—C2—C6—O4 | −86.7 (5) |
C3—N2—C2—C6 | −178.6 (3) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) −x+1/2, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O4iii | 0.82 | 2.56 | 3.328 (5) | 156 |
O2W—H2WA···O1iv | 0.84 | 2.02 | 2.834 (5) | 164 |
O2W—H2WB···N2v | 0.83 | 2.24 | 3.036 (4) | 161 |
O3W—H3WA···O4v | 0.85 | 1.82 | 2.656 (6) | 169 |
O3W—H3WB···O4vi | 0.83 | 2.25 | 2.865 (4) | 132 |
O3W—H3WB···O2vi | 0.83 | 2.22 | 2.935 (4) | 144 |
Symmetry codes: (iii) x+1/2, −y+1/2, z+1/2; (iv) x−1, y, z; (v) −x−1/2, y+1/2, −z+1/2; (vi) x−1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C6H2N2O4)(H2O)3] |
Mr | 332.54 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 5.586 (6), 15.748 (9), 10.832 (6) |
β (°) | 93.94 (3) |
V (Å3) | 950.5 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.32 |
Crystal size (mm) | 0.25 × 0.23 × 0.18 |
Data collection | |
Diffractometer | Weissenberg IP diffractometer |
Absorption correction | Multi-scan (TEXRAY; Molecular Structure Corporation, 1999) |
Tmin, Tmax | 0.668, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5659, 2129, 1699 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.074, 1.03 |
No. of reflections | 2129 |
No. of parameters | 145 |
No. of restraints | 9 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.82, −0.53 |
Computer programs: TEXRAY (Molecular Structure Corporation, 1999), TEXSAN (Molecular Structure Corporation, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEX (McArdle, 1995).
Cd1—O3W | 2.218 (3) | Cd1—N1 | 2.334 (3) |
Cd1—O1 | 2.265 (3) | Cd1—O2W | 2.397 (4) |
Cd1—O3i | 2.294 (3) | Cd1—O1W | 2.451 (3) |
O3W—Cd1—O1 | 167.27 (11) | O3i—Cd1—O2W | 75.44 (12) |
O3W—Cd1—O3i | 102.02 (13) | N1—Cd1—O2W | 85.28 (11) |
O1—Cd1—O3i | 90.61 (11) | O3W—Cd1—O1W | 81.30 (13) |
O3W—Cd1—N1 | 96.29 (14) | O1—Cd1—O1W | 90.37 (12) |
O1—Cd1—N1 | 72.59 (11) | O3i—Cd1—O1W | 123.85 (12) |
O3i—Cd1—N1 | 152.11 (10) | N1—Cd1—O1W | 79.40 (11) |
O3W—Cd1—O2W | 85.67 (14) | O2W—Cd1—O1W | 158.60 (11) |
O1—Cd1—O2W | 99.25 (12) |
Symmetry code: (i) −x+1/2, y+1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O4ii | 0.82 | 2.56 | 3.328 (5) | 156.1 |
O2W—H2WA···O1iii | 0.84 | 2.02 | 2.834 (5) | 164.1 |
O2W—H2WB···N2iv | 0.83 | 2.24 | 3.036 (4) | 161.1 |
O3W—H3WA···O4iv | 0.85 | 1.82 | 2.656 (6) | 168.5 |
O3W—H3WB···O4v | 0.83 | 2.25 | 2.865 (4) | 131.5 |
O3W—H3WB···O2v | 0.83 | 2.22 | 2.935 (4) | 144.0 |
Symmetry codes: (ii) x+1/2, −y+1/2, z+1/2; (iii) x−1, y, z; (iv) −x−1/2, y+1/2, −z+1/2; (v) x−1/2, −y+1/2, z+1/2. |
Acknowledgements
The author is grateful for financial support from the Key Science and Technology Project of Fijian Province, China (grant Nos. 2008Y0051 and 2007Y0062).
References
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Pyrazine-2,3-dicarboxylic acid (pzdcH2) as a multidentate bridging ligand has been widely applied to construct polymeric coordination compounds (Mao et al.,1996; Kitaura et al., 2002). Recently, some pzdc-Cd complexes that exhibit selective gas adsorption and photoluminescence were synthesized by self assembling (Maji et al., 2004; Yin et al., 2007; Yin et al., 2009). In this work, a new polymorph of the title compound was obtained by introducing 1,2,4-triazol as the acidity modulating reagent in the reaction of pzdcH2 and Cd(II) ion.
The title compound is a one-dimensional zigzag chain structure composed of CdII ions bridged by pzdc ligands. Cd1 is coordinated by N1, O1 and O3i atoms from two pzdc ligands [symmetry code (i), -x + 1/2, y + 1/2, -z + 1/2] and three coordinated water molecules (O1W, O2W and O3W) (see Fig. 1). The corresponding bond lengths range from 2.265 (3) to 2.333 (3) Å. The Cd1 atom has a weak interaction with O4i (Cd1···O4i = 2.658 (4) Å). Overall, the geometry of Cd may be considered as a distorted pentagonal bipyramid. The title compound crystallizes in the monoclinic space group P21/n whereas the already known polymorph crystallizes in the orthorhombic space group P212121 (Ma et al., 2006). O-H···O hydrogen bonds combine the chains into a three-dimensional framework (Table 2). The neighboring Cd···Cd distance is 8.25 (1) Å.