organic compounds
N-(6-Methyl-2-pyridyl)formamide
aDepartment of Chemical Engineering and Material Engineering, Nanya Institute of Technology, Chung-Li, Taiwan, and bDepartment of Chemistry, Chung-Yuan Christian University, Chung-Li, Taiwan
*Correspondence e-mail: jdchen@cycu.edu.tw
The molecule of the title compound, C7H8N2O, is essentially planar with a maximum deviation of 0.0439 (1) Å from the best plane. In the crystal, N—H⋯O hydrogen bonds between self-complementary amide groups join molecules into centrosymmetric dimers.
Related literature
For the synthesis of the title compound, see: Hosmane et al. (1984). For background to this work, see: Wang et al. (2006). For the structure of 2-pyridylformamide, see: Bock et al. (1996).
Experimental
Crystal data
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Refinement
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Data collection: XSCANS (Siemens, 1995); cell XSCANS; data reduction: SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809053549/gk2247sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809053549/gk2247Isup2.hkl
The title compound was prepared according to a procedure reported for N-(2-pyrimidinyl)formamide by Hosmane et al. (1984). Coloress plate crystals suitable for X-ray crystallography were obtained by dissolving the title compound in CH2Cl2, followed by allowing the solution to evaporate slowly under air.
All the hydrogen atoms were placed into idealized positions and constrained by the riding atom approximation with C—H = 0.93 — 0.96 Å, N—H = 0.86 Å and Uiso(H) = 1.5 Ueq(C) or 1.2 Ueq(C, N). The methyl H atoms are disordered and were refined in two different orientations.
Data collection: XSCANS (Siemens, 1995); cell
XSCANS (Siemens, 1995); data reduction: SHELXTL (Sheldrick, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound with atom labeling and displacement ellipsoids drawn at the 30% probability level. The disorder is shown with open bonds. |
C7H8N2O | Z = 2 |
Mr = 136.15 | F(000) = 144 |
Triclinic, P1 | Dx = 1.282 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.0611 (6) Å | Cell parameters from 23 reflections |
b = 8.6232 (12) Å | θ = 8.8–16.8° |
c = 10.3231 (12) Å | µ = 0.09 mm−1 |
α = 87.421 (12)° | T = 295 K |
β = 79.344 (14)° | Plate, colorless |
γ = 83.103 (15)° | 0.5 × 0.2 × 0.1 mm |
V = 352.61 (8) Å3 |
Bruker P4 diffractometer | 993 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.031 |
Graphite monochromator | θmax = 25.0°, θmin = 4.6° |
ω scans | h = −4→1 |
Absorption correction: ψ scan (XSCANS; Siemens, 1995) | k = −10→10 |
Tmin = 0.713, Tmax = 0.940 | l = −12→12 |
1757 measured reflections | 3 standard reflections every 97 reflections |
1222 independent reflections | intensity decay: none |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.148 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0874P)2 + 0.0372P] where P = (Fo2 + 2Fc2)/3 |
1222 reflections | (Δ/σ)max < 0.001 |
92 parameters | Δρmax = 0.15 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
C7H8N2O | γ = 83.103 (15)° |
Mr = 136.15 | V = 352.61 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 4.0611 (6) Å | Mo Kα radiation |
b = 8.6232 (12) Å | µ = 0.09 mm−1 |
c = 10.3231 (12) Å | T = 295 K |
α = 87.421 (12)° | 0.5 × 0.2 × 0.1 mm |
β = 79.344 (14)° |
Bruker P4 diffractometer | 993 reflections with I > 2σ(I) |
Absorption correction: ψ scan (XSCANS; Siemens, 1995) | Rint = 0.031 |
Tmin = 0.713, Tmax = 0.940 | 3 standard reflections every 97 reflections |
1757 measured reflections | intensity decay: none |
1222 independent reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.148 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.15 e Å−3 |
1222 reflections | Δρmin = −0.16 e Å−3 |
92 parameters |
Experimental. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O | 1.4562 (3) | 0.34810 (14) | 0.62540 (13) | 0.0766 (5) | |
N1 | 1.1428 (3) | 0.58235 (15) | 0.62843 (12) | 0.0528 (4) | |
H1A | 1.2438 | 0.6042 | 0.5501 | 0.063* | |
N2 | 0.7461 (3) | 0.66352 (15) | 0.81236 (13) | 0.0509 (4) | |
C1 | 0.3445 (5) | 0.7290 (3) | 1.01096 (18) | 0.0728 (6) | |
H1B | 0.3774 | 0.6176 | 1.0235 | 0.109* | 0.50 |
H1C | 0.1076 | 0.7634 | 1.0212 | 0.109* | 0.50 |
H1D | 0.4388 | 0.7780 | 1.0751 | 0.109* | 0.50 |
H1E | 0.2384 | 0.8217 | 1.0564 | 0.109* | 0.50 |
H1F | 0.5083 | 0.6759 | 1.0587 | 0.109* | 0.50 |
H1G | 0.1771 | 0.6613 | 1.0048 | 0.109* | 0.50 |
C2 | 0.5164 (4) | 0.77275 (19) | 0.87483 (16) | 0.0553 (5) | |
C3 | 0.4394 (5) | 0.9158 (2) | 0.8175 (2) | 0.0685 (5) | |
H3A | 0.2829 | 0.9906 | 0.8637 | 0.082* | |
C4 | 0.5969 (5) | 0.9474 (2) | 0.6904 (2) | 0.0717 (6) | |
H4A | 0.5462 | 1.0435 | 0.6498 | 0.086* | |
C5 | 0.8283 (4) | 0.8360 (2) | 0.62478 (18) | 0.0609 (5) | |
H5A | 0.9351 | 0.8536 | 0.5385 | 0.073* | |
C6 | 0.8977 (4) | 0.69680 (18) | 0.69102 (15) | 0.0480 (4) | |
C7 | 1.2323 (4) | 0.4432 (2) | 0.67961 (16) | 0.0621 (5) | |
H7A | 1.1165 | 0.4164 | 0.7624 | 0.075* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O | 0.0884 (9) | 0.0587 (8) | 0.0646 (8) | 0.0094 (7) | 0.0201 (7) | 0.0038 (6) |
N1 | 0.0586 (8) | 0.0521 (8) | 0.0424 (7) | −0.0075 (6) | 0.0051 (6) | 0.0000 (6) |
N2 | 0.0505 (8) | 0.0535 (8) | 0.0467 (7) | −0.0083 (6) | −0.0011 (6) | −0.0051 (6) |
C1 | 0.0666 (11) | 0.0840 (13) | 0.0597 (11) | −0.0036 (9) | 0.0098 (9) | −0.0148 (9) |
C2 | 0.0468 (9) | 0.0588 (9) | 0.0589 (10) | −0.0068 (7) | −0.0031 (7) | −0.0124 (8) |
C3 | 0.0574 (10) | 0.0579 (10) | 0.0857 (13) | −0.0004 (8) | −0.0027 (9) | −0.0137 (9) |
C4 | 0.0680 (11) | 0.0529 (10) | 0.0918 (14) | −0.0039 (8) | −0.0123 (10) | 0.0086 (9) |
C5 | 0.0616 (10) | 0.0566 (10) | 0.0630 (10) | −0.0121 (8) | −0.0061 (8) | 0.0095 (8) |
C6 | 0.0463 (8) | 0.0500 (9) | 0.0479 (8) | −0.0112 (7) | −0.0046 (6) | −0.0036 (7) |
C7 | 0.0702 (11) | 0.0563 (10) | 0.0493 (9) | −0.0014 (8) | 0.0121 (8) | 0.0035 (7) |
O—C7 | 1.2192 (19) | C1—H1F | 0.9600 |
N1—C7 | 1.327 (2) | C1—H1G | 0.9600 |
N1—C6 | 1.402 (2) | C2—C3 | 1.371 (3) |
N1—H1A | 0.8600 | C3—C4 | 1.380 (3) |
N2—C6 | 1.325 (2) | C3—H3A | 0.9300 |
N2—C2 | 1.339 (2) | C4—C5 | 1.368 (3) |
C1—C2 | 1.502 (2) | C4—H4A | 0.9300 |
C1—H1B | 0.9600 | C5—C6 | 1.380 (2) |
C1—H1C | 0.9600 | C5—H5A | 0.9300 |
C1—H1D | 0.9600 | C7—H7A | 0.9300 |
C1—H1E | 0.9600 | ||
C7—N1—C6 | 125.62 (13) | H1D—C1—H1G | 141.1 |
C7—N1—H1A | 117.2 | H1E—C1—H1G | 109.5 |
C6—N1—H1A | 117.2 | H1F—C1—H1G | 109.5 |
C6—N2—C2 | 117.87 (15) | N2—C2—C3 | 122.02 (16) |
C2—C1—H1B | 109.5 | N2—C2—C1 | 116.18 (15) |
C2—C1—H1C | 109.5 | C3—C2—C1 | 121.80 (16) |
H1B—C1—H1C | 109.5 | C2—C3—C4 | 119.19 (17) |
C2—C1—H1D | 109.5 | C2—C3—H3A | 120.4 |
H1B—C1—H1D | 109.5 | C4—C3—H3A | 120.4 |
H1C—C1—H1D | 109.5 | C5—C4—C3 | 119.38 (17) |
C2—C1—H1E | 109.5 | C5—C4—H4A | 120.3 |
H1B—C1—H1E | 141.1 | C3—C4—H4A | 120.3 |
H1C—C1—H1E | 56.3 | C4—C5—C6 | 117.69 (17) |
H1D—C1—H1E | 56.3 | C4—C5—H5A | 121.2 |
C2—C1—H1F | 109.5 | C6—C5—H5A | 121.2 |
H1B—C1—H1F | 56.3 | N2—C6—C5 | 123.81 (16) |
H1C—C1—H1F | 141.1 | N2—C6—N1 | 117.00 (14) |
H1D—C1—H1F | 56.3 | C5—C6—N1 | 119.19 (14) |
H1E—C1—H1F | 109.5 | O—C7—N1 | 124.40 (15) |
C2—C1—H1G | 109.5 | O—C7—H7A | 117.8 |
H1B—C1—H1G | 56.3 | N1—C7—H7A | 117.8 |
H1C—C1—H1G | 56.3 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Oi | 0.86 | 2.04 | 2.8971 (19) | 172 |
Symmetry code: (i) −x+3, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C7H8N2O |
Mr | 136.15 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 4.0611 (6), 8.6232 (12), 10.3231 (12) |
α, β, γ (°) | 87.421 (12), 79.344 (14), 83.103 (15) |
V (Å3) | 352.61 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.5 × 0.2 × 0.1 |
Data collection | |
Diffractometer | Bruker P4 diffractometer |
Absorption correction | ψ scan (XSCANS; Siemens, 1995) |
Tmin, Tmax | 0.713, 0.940 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 1757, 1222, 993 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.148, 1.05 |
No. of reflections | 1222 |
No. of parameters | 92 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.15, −0.16 |
Computer programs: XSCANS (Siemens, 1995), SHELXTL (Sheldrick, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Oi | 0.86 | 2.04 | 2.8971 (19) | 172.1 |
Symmetry code: (i) −x+3, −y+1, −z+1. |
Acknowledgements
We are grateful to the National Science Council of the Republic of China for support. This research was also supported by the project of the specific research fields in Chung-Yuan Christian University, Taiwan, under grant No. CYCU-98-CR—CH.
References
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Hosmane, R. S., Burnett, F. N. & Albert, M. S. (1984). J. Org. Chem. 49, 1212–1215. CrossRef CAS Web of Science Google Scholar
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Siemens (1995). XSCANS. Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA. Google Scholar
Wang, Y.-H., Chu, K.-L., Chen, H.-C., Yeh, C.-W., Chan, Z.-K., Suen, M.-C., Chen, J.-D. & Wang, J.-C. (2006). CrystEngComm, 8, 84–93. CAS Google Scholar
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A series of Ag(I) coordination polymers containg 2-aminopyrimidine or 2-amino-4,6-dimethylpyrimidine ligands have been prepared, which show one-dimensional and two-dimensional structures (Wang, et al., 2006) with interesting bonding modes. To investigate the effect of flexibility of the ligand on the structural type of such coordination polymers, we have synthesized the title compound. Within this project its crystal structure was determined.
The title molecule is almost planar (Fig. 1). In the crystal structure weak intermolecular N—H···O hydrogen bonding is found between self-complementary amide groups (Table 1) that connects molecules into centrosymmetric dimers. In 2-pyridylformamide the molecules formed dimers via hydrogen bonds between self-complementary 2-pyridylamino groups (Bock et al., 1996).