organic compounds
4-Amino-3-(1-naphthyloxymethyl)-1H-1,2,4-triazole-5(4H)-thione
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSeQuent Scientific Limited, No. 120 A & B, Industrial Area, Baikampady, New Mangalore, Karnataka 575 011, India, and cDepartment of Chemistry, National Institute of Technology-Karnataka, Surathkal, Mangalore 575 025, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C13H12N4OS, the dihedral angle between the triazole and naphthalene ring systems is 67.42 (5)°. In the crystal, adjacent molecules are linked via two pairs of intermolecular N—H⋯S interactions, forming R22(8) and R22(10) ring motifs. Weak C—H⋯S interactions generate infinite chains along [001] and the structure is further consolidated by C–H⋯π bonds and aromatic π⋯π stacking interactions [distance between the centroids of the triazole rings = 3.2479 (7) Å].
Related literature
For general background to and the pharmacological activity of triazole derivatives, see: Amir et al. (2008); Sztanke et al. (2008); Kuş et al. (2008); Padmavathi et al. (2008); Isloor et al. (2009). For a related structure, see: Fun et al. (2009). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the preparation, see: Suresh (1992). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809051368/hb5255sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809051368/hb5255Isup2.hkl
2-(1-Naphthyloxy)acetohydrazide (21.6 g, 1.00 mmol) was added slowly to a solution of potassium hydroxide (8.4 g, 1.50 mmol) in ethanol (150 ml). The resulting mixture was stirred well until a clear solution was obtained. Carbon disulphide (11.4 g, 1.50 mmol) was added drop-wise and the contents were stirred vigorously. Further stirring was continued for 24 h. The resulting mixture was diluted with ether (100 ml) and the precipitate formed was collected by filtration, washed with dry ether and dried at 65 /%c under vacuum. It was used for the next step without any purification.
A mixture of the above synthesized potassium dithiocarbazinate (16.5 g, 0.50 mmol), hydrazine hydrate (99 %, 1.00 mmol) and water (2 ml) was heated gently to boil for 30 minutes. Heating was continued until the evacuation of hydrogen sulphide ceased. The reaction mixture was cooled to room temperature, diluted with water (100 ml) and acidified with HCl. The solid mass that separated was collected by filtration, washed with water and dried. Recrystallization was achieved from ethanol. The yield was 9.25 g (68 %), m. p. 470-471 K (Suresh, 1992).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of (I), showing 50% probability displacement ellipsoids for non-H atoms. | |
Fig. 2. The crystal structure of (I) viewed along the b axis. Intermolecular interactions are shown in dashed lines. |
C13H12N4OS | F(000) = 568 |
Mr = 272.33 | Dx = 1.445 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5692 reflections |
a = 7.0023 (1) Å | θ = 2.9–35.1° |
b = 24.0785 (4) Å | µ = 0.26 mm−1 |
c = 8.0915 (1) Å | T = 100 K |
β = 113.404 (1)° | Plate, yellow |
V = 1252.02 (3) Å3 | 0.38 × 0.23 × 0.07 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 5826 independent reflections |
Radiation source: fine-focus sealed tube | 4223 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
ϕ and ω scans | θmax = 35.8°, θmin = 2.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −11→11 |
Tmin = 0.908, Tmax = 0.983 | k = −39→38 |
24326 measured reflections | l = −13→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | All H-atom parameters refined |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0592P)2 + 0.214P] where P = (Fo2 + 2Fc2)/3 |
5826 reflections | (Δ/σ)max < 0.001 |
220 parameters | Δρmax = 0.51 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
C13H12N4OS | V = 1252.02 (3) Å3 |
Mr = 272.33 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.0023 (1) Å | µ = 0.26 mm−1 |
b = 24.0785 (4) Å | T = 100 K |
c = 8.0915 (1) Å | 0.38 × 0.23 × 0.07 mm |
β = 113.404 (1)° |
Bruker SMART APEXII CCD diffractometer | 5826 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 4223 reflections with I > 2σ(I) |
Tmin = 0.908, Tmax = 0.983 | Rint = 0.045 |
24326 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.122 | All H-atom parameters refined |
S = 1.03 | Δρmax = 0.51 e Å−3 |
5826 reflections | Δρmin = −0.33 e Å−3 |
220 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.00629 (5) | 0.044619 (13) | 0.25791 (4) | 0.01810 (8) | |
O1 | 0.52129 (13) | −0.11362 (4) | 0.14188 (11) | 0.01666 (16) | |
N1 | 0.22651 (15) | −0.04341 (4) | 0.46060 (13) | 0.01481 (17) | |
N2 | 0.38889 (16) | −0.07854 (4) | 0.47914 (13) | 0.01636 (18) | |
N3 | 0.33179 (15) | −0.01814 (4) | 0.25913 (12) | 0.01411 (17) | |
N4 | 0.37675 (18) | 0.01243 (5) | 0.13172 (14) | 0.0193 (2) | |
C1 | 0.18602 (17) | −0.00623 (5) | 0.32721 (14) | 0.01419 (19) | |
C2 | 0.44981 (17) | −0.06189 (5) | 0.35421 (15) | 0.01418 (19) | |
C3 | 0.61978 (18) | −0.08762 (5) | 0.31417 (15) | 0.0162 (2) | |
C4 | 0.65096 (17) | −0.13872 (5) | 0.07391 (14) | 0.01338 (19) | |
C5 | 0.86351 (18) | −0.14187 (5) | 0.16169 (16) | 0.0165 (2) | |
C6 | 0.98108 (19) | −0.16981 (5) | 0.07908 (17) | 0.0195 (2) | |
C7 | 0.88492 (19) | −0.19351 (5) | −0.08729 (17) | 0.0187 (2) | |
C8 | 0.66644 (18) | −0.19040 (5) | −0.18076 (15) | 0.01484 (19) | |
C9 | 0.5615 (2) | −0.21540 (5) | −0.35253 (16) | 0.0185 (2) | |
C10 | 0.3499 (2) | −0.21323 (5) | −0.43817 (16) | 0.0199 (2) | |
C11 | 0.2304 (2) | −0.18580 (5) | −0.35758 (16) | 0.0178 (2) | |
C12 | 0.32576 (18) | −0.16061 (5) | −0.19258 (15) | 0.01452 (19) | |
C13 | 0.54499 (17) | −0.16261 (4) | −0.10061 (14) | 0.01255 (18) | |
H3A | 0.693 (2) | −0.1148 (6) | 0.405 (2) | 0.013 (3)* | |
H3B | 0.715 (2) | −0.0602 (6) | 0.310 (2) | 0.015 (4)* | |
H5A | 0.940 (3) | −0.1254 (7) | 0.279 (2) | 0.022 (4)* | |
H6A | 1.131 (3) | −0.1723 (7) | 0.134 (2) | 0.029 (4)* | |
H7A | 0.962 (3) | −0.2110 (7) | −0.143 (2) | 0.026 (4)* | |
H9A | 0.647 (3) | −0.2335 (7) | −0.404 (2) | 0.031 (5)* | |
H10A | 0.288 (3) | −0.2318 (7) | −0.550 (2) | 0.028 (4)* | |
H11A | 0.080 (3) | −0.1865 (7) | −0.414 (2) | 0.023 (4)* | |
H12A | 0.240 (3) | −0.1418 (7) | −0.142 (2) | 0.022 (4)* | |
H1N1 | 0.162 (3) | −0.0455 (7) | 0.536 (3) | 0.031 (5)* | |
H1N4 | 0.284 (3) | 0.0023 (8) | 0.022 (3) | 0.035 (5)* | |
H2N4 | 0.354 (3) | 0.0475 (8) | 0.153 (3) | 0.035 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01841 (14) | 0.02112 (15) | 0.01629 (13) | 0.00540 (10) | 0.00852 (11) | 0.00193 (10) |
O1 | 0.0150 (4) | 0.0207 (4) | 0.0148 (3) | 0.0010 (3) | 0.0065 (3) | −0.0072 (3) |
N1 | 0.0161 (4) | 0.0159 (4) | 0.0151 (4) | 0.0006 (3) | 0.0090 (4) | −0.0001 (3) |
N2 | 0.0187 (4) | 0.0159 (4) | 0.0170 (4) | 0.0015 (4) | 0.0098 (4) | −0.0006 (3) |
N3 | 0.0157 (4) | 0.0156 (4) | 0.0129 (4) | 0.0004 (3) | 0.0077 (3) | −0.0001 (3) |
N4 | 0.0248 (5) | 0.0216 (5) | 0.0153 (4) | 0.0013 (4) | 0.0122 (4) | 0.0031 (4) |
C1 | 0.0144 (5) | 0.0157 (5) | 0.0133 (4) | −0.0014 (4) | 0.0064 (4) | −0.0022 (3) |
C2 | 0.0151 (5) | 0.0143 (5) | 0.0138 (4) | −0.0005 (4) | 0.0064 (4) | −0.0029 (3) |
C3 | 0.0157 (5) | 0.0191 (5) | 0.0135 (4) | 0.0012 (4) | 0.0056 (4) | −0.0044 (4) |
C4 | 0.0141 (4) | 0.0139 (5) | 0.0140 (4) | 0.0013 (3) | 0.0076 (4) | −0.0015 (3) |
C5 | 0.0148 (5) | 0.0188 (5) | 0.0156 (5) | 0.0000 (4) | 0.0057 (4) | −0.0023 (4) |
C6 | 0.0145 (5) | 0.0233 (6) | 0.0218 (5) | 0.0027 (4) | 0.0085 (4) | −0.0006 (4) |
C7 | 0.0187 (5) | 0.0193 (5) | 0.0218 (5) | 0.0035 (4) | 0.0118 (5) | −0.0007 (4) |
C8 | 0.0187 (5) | 0.0130 (5) | 0.0159 (4) | 0.0008 (4) | 0.0100 (4) | 0.0001 (4) |
C9 | 0.0259 (6) | 0.0157 (5) | 0.0172 (5) | −0.0006 (4) | 0.0120 (5) | −0.0034 (4) |
C10 | 0.0261 (6) | 0.0174 (5) | 0.0153 (5) | −0.0032 (4) | 0.0072 (5) | −0.0039 (4) |
C11 | 0.0185 (5) | 0.0177 (5) | 0.0159 (5) | −0.0026 (4) | 0.0054 (4) | 0.0000 (4) |
C12 | 0.0156 (5) | 0.0137 (5) | 0.0148 (4) | −0.0003 (4) | 0.0066 (4) | −0.0003 (4) |
C13 | 0.0145 (5) | 0.0111 (4) | 0.0129 (4) | 0.0004 (3) | 0.0065 (4) | −0.0003 (3) |
S1—C1 | 1.6842 (12) | C5—C6 | 1.4192 (16) |
O1—C4 | 1.3743 (12) | C5—H5A | 0.971 (17) |
O1—C3 | 1.4308 (13) | C6—C7 | 1.3678 (18) |
N1—C1 | 1.3431 (14) | C6—H6A | 0.964 (18) |
N1—N2 | 1.3768 (13) | C7—C8 | 1.4138 (17) |
N1—H1N1 | 0.894 (19) | C7—H7A | 0.931 (17) |
N2—C2 | 1.3066 (14) | C8—C9 | 1.4223 (16) |
N3—C1 | 1.3691 (13) | C8—C13 | 1.4246 (15) |
N3—C2 | 1.3710 (15) | C9—C10 | 1.3648 (19) |
N3—N4 | 1.4005 (13) | C9—H9A | 0.964 (17) |
N4—H1N4 | 0.90 (2) | C10—C11 | 1.4123 (17) |
N4—H2N4 | 0.888 (19) | C10—H10A | 0.947 (18) |
C2—C3 | 1.4872 (15) | C11—C12 | 1.3740 (16) |
C3—H3A | 0.966 (15) | C11—H11A | 0.967 (17) |
C3—H3B | 0.948 (15) | C12—C13 | 1.4160 (16) |
C4—C5 | 1.3732 (16) | C12—H12A | 0.960 (16) |
C4—C13 | 1.4294 (15) | ||
C4—O1—C3 | 116.29 (9) | C4—C5—H5A | 123.0 (10) |
C1—N1—N2 | 113.50 (9) | C6—C5—H5A | 117.3 (10) |
C1—N1—H1N1 | 125.7 (12) | C7—C6—C5 | 120.69 (11) |
N2—N1—H1N1 | 120.7 (12) | C7—C6—H6A | 116.6 (10) |
C2—N2—N1 | 103.67 (9) | C5—C6—H6A | 122.6 (10) |
C1—N3—C2 | 108.34 (9) | C6—C7—C8 | 120.62 (10) |
C1—N3—N4 | 127.42 (10) | C6—C7—H7A | 121.0 (11) |
C2—N3—N4 | 123.73 (9) | C8—C7—H7A | 118.4 (11) |
N3—N4—H1N4 | 107.3 (12) | C7—C8—C9 | 121.97 (10) |
N3—N4—H2N4 | 104.3 (12) | C7—C8—C13 | 119.74 (10) |
H1N4—N4—H2N4 | 109.4 (18) | C9—C8—C13 | 118.27 (10) |
N1—C1—N3 | 103.33 (9) | C10—C9—C8 | 121.01 (10) |
N1—C1—S1 | 130.05 (8) | C10—C9—H9A | 122.4 (11) |
N3—C1—S1 | 126.60 (9) | C8—C9—H9A | 116.6 (11) |
N2—C2—N3 | 111.15 (10) | C9—C10—C11 | 120.41 (11) |
N2—C2—C3 | 125.18 (11) | C9—C10—H10A | 117.4 (10) |
N3—C2—C3 | 123.64 (10) | C11—C10—H10A | 122.2 (10) |
O1—C3—C2 | 106.07 (9) | C12—C11—C10 | 120.45 (11) |
O1—C3—H3A | 110.6 (9) | C12—C11—H11A | 119.1 (10) |
C2—C3—H3A | 109.9 (8) | C10—C11—H11A | 120.4 (10) |
O1—C3—H3B | 110.0 (9) | C11—C12—C13 | 120.17 (10) |
C2—C3—H3B | 110.6 (9) | C11—C12—H12A | 118.5 (10) |
H3A—C3—H3B | 109.6 (13) | C13—C12—H12A | 121.4 (10) |
C5—C4—O1 | 124.75 (10) | C12—C13—C8 | 119.68 (10) |
C5—C4—C13 | 121.29 (9) | C12—C13—C4 | 122.31 (9) |
O1—C4—C13 | 113.96 (9) | C8—C13—C4 | 117.98 (10) |
C4—C5—C6 | 119.66 (11) | ||
C1—N1—N2—C2 | 0.50 (13) | C4—C5—C6—C7 | 0.18 (19) |
N2—N1—C1—N3 | −0.61 (12) | C5—C6—C7—C8 | 0.32 (19) |
N2—N1—C1—S1 | −179.18 (9) | C6—C7—C8—C9 | −178.92 (12) |
C2—N3—C1—N1 | 0.48 (12) | C6—C7—C8—C13 | −0.36 (18) |
N4—N3—C1—N1 | −171.51 (10) | C7—C8—C9—C10 | 178.15 (11) |
C2—N3—C1—S1 | 179.11 (9) | C13—C8—C9—C10 | −0.43 (17) |
N4—N3—C1—S1 | 7.12 (17) | C8—C9—C10—C11 | 0.18 (18) |
N1—N2—C2—N3 | −0.17 (12) | C9—C10—C11—C12 | 0.48 (18) |
N1—N2—C2—C3 | −178.26 (11) | C10—C11—C12—C13 | −0.87 (17) |
C1—N3—C2—N2 | −0.20 (13) | C11—C12—C13—C8 | 0.61 (16) |
N4—N3—C2—N2 | 172.15 (10) | C11—C12—C13—C4 | −177.82 (11) |
C1—N3—C2—C3 | 177.92 (10) | C7—C8—C13—C12 | −178.58 (11) |
N4—N3—C2—C3 | −9.73 (17) | C9—C8—C13—C12 | 0.03 (16) |
C4—O1—C3—C2 | 177.76 (9) | C7—C8—C13—C4 | −0.08 (16) |
N2—C2—C3—O1 | 110.95 (12) | C9—C8—C13—C4 | 178.53 (10) |
N3—C2—C3—O1 | −66.91 (14) | C5—C4—C13—C12 | 179.03 (11) |
C3—O1—C4—C5 | 2.21 (16) | O1—C4—C13—C12 | −0.50 (15) |
C3—O1—C4—C13 | −178.28 (9) | C5—C4—C13—C8 | 0.57 (16) |
O1—C4—C5—C6 | 178.85 (11) | O1—C4—C13—C8 | −178.96 (9) |
C13—C4—C5—C6 | −0.63 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···S1i | 0.89 (2) | 2.39 (2) | 3.2857 (11) | 176.2 (14) |
N4—H1N4···S1ii | 0.90 (2) | 2.62 (2) | 3.5075 (12) | 167.3 (19) |
C12—H12A···S1ii | 0.96 (2) | 2.836 (18) | 3.5368 (13) | 130.3 (12) |
C9—H9A···Cg1iii | 0.964 (17) | 2.794 (18) | 3.6345 (14) | 146.8 (14) |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x, −y, −z; (iii) x, −y−3/2, z−3/2. |
Experimental details
Crystal data | |
Chemical formula | C13H12N4OS |
Mr | 272.33 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 7.0023 (1), 24.0785 (4), 8.0915 (1) |
β (°) | 113.404 (1) |
V (Å3) | 1252.02 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.38 × 0.23 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.908, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 24326, 5826, 4223 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.823 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.122, 1.03 |
No. of reflections | 5826 |
No. of parameters | 220 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.51, −0.33 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···S1i | 0.89 (2) | 2.39 (2) | 3.2857 (11) | 176.2 (14) |
N4—H1N4···S1ii | 0.90 (2) | 2.62 (2) | 3.5075 (12) | 167.3 (19) |
C12—H12A···S1ii | 0.96 (2) | 2.836 (18) | 3.5368 (13) | 130.3 (12) |
C9—H9A···Cg1iii | 0.964 (17) | 2.794 (18) | 3.6345 (14) | 146.8 (14) |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x, −y, −z; (iii) x, −y−3/2, z−3/2. |
Acknowledgements
HKF and CKQ thank Universiti Sains Malaysia (USM) for the Research University Golden Goose Grant (1001/PFIZIK/811012). CKQ thanks USM for a Research Fellowship. AMI is grateful to the Head of the Department of Chemistry and Director, NITK, Surathkal, India, for providing research facilities.
References
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1,2,4-triazole and its derivatives were reported to exhibit various pharmacological activities such as antimicrobial, analgesic, anti-inflammatory, anticancer and antioxidant properties (Amir et al., 2008; Sztanke et al.., 2008; Kuş et al., 2008; Padmavathi et al., 2008). A few derivatives of triazoles have exhibited antimicrobial activity (Isloor et al., 2009). Some of the present day drugs such as ribavirin (antiviral agent), rizatriptan (anti migraine agent), alprazolam (anxiolytic agent), fluconazole and itraconazole (antifungal agents) are the best examples for potent molecules possessing the triazole nucleus. The amino and mercapto groups of 1,2,4-triazoles serve as readily accessible nucleophilic centers of the preparation of N-bridged heterocycles. Keeping in view of the biological importance, we have synthesized the title compound to study its crystal structure.
The molecular structure of the title compound is shown in Fig. 1. The triazole ring (C1/N1/N2/C2/N3) make an dihedral angle of 67.42 (5)° with naphthalene ring (C4-C13). Short intermolecular distances between the centroids of the triazole rings [3.2479 (7) Å] indicate the existence of π···π interactions. The molecular structure is linked via pairs of intermolecular N1—H1N1···S1 and N4—H1N4···S1 interactions, forming R22 (8) and R22 (10) ring motifs (Bernstein et al., 1995), respectively. Bond lengths and angles are within normal ranges, and comparable to a closely related structure (Fun et al., 2009). In the crystal packing (Fig. 2), the molecules are linked into infinite one-dimensional chains along the direction [0 0 1] via adjacent ring motifs and C12–H12A···S1 interactions (Fig. 2). The crystal strcuture is further consolidated by C–H···π (Table 1) interactions.