organic compounds
N2,N2,N5,N5-Tetrakis(2-chloroethyl)-3,4-dimethylthiophene-2,5-dicarboxamide
aSchool of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, People's Republic of China
*Correspondence e-mail: zhouch@swu.edu.cn
In the title compound, C16H22Cl4N2O2S, the two imide groups adopt a trans arrangement relative to the central thienyl ring, so the four terminal 2-chloroethyl arms adopt different orientations. In the crystal, molecules are linked by weak C—H⋯Cl and C—H⋯O hydrogen bonds into a three-dimensional network.
Related literature
For general background to nitrogen mustard agents as antitumor dugs, see: Zhuang et al. (2008). For the synthesis, see: Luo et al. (2007). For a related structure, see: Dong et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: APEX2 (Bruker, 2004) and publCIF (Westrip, 2009).
Supporting information
10.1107/S1600536809052374/ng2703sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809052374/ng2703Isup2.hkl
The title compound (I) was gained by amidation of 3,4-dimethylthiophene-2,5-dicarbonyl dichloride (1 mmol) with bis(2-chloroethyl)amine (2 mmol) according to literature (Luo et al., 2007). A crystal of (I) suitable for X-ray analysis was grown from a mixture solution of ethyl acetate and petroleum ether by slow evaporation at room temperature.
Hydrogenatoms were placed in calculated positions with C—H =0.97Å (methylene) and 0.96Å (methyl) with Uiso(H) = 1.2Ueq(C)(methylene C) or 1.5Ueq(C) (methyl C).
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXLTL (Sheldrick, 2008); software used to prepare material for publication: APEX2 (Bruker, 2004) and publCIF (Westrip, 2009).Fig. 1. The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Packing diagram. |
C16H22Cl4N2O2S | F(000) = 928 |
Mr = 448.22 | Dx = 1.425 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 7657 reflections |
a = 7.9238 (4) Å | θ = 1.0–28.3° |
b = 21.1712 (11) Å | µ = 0.68 mm−1 |
c = 12.6186 (7) Å | T = 298 K |
β = 99.238 (1)° | Block, white |
V = 2089.39 (19) Å3 | 0.25 × 0.22 × 0.20 mm |
Z = 4 |
Bruker APEXII area-detector diffractometer | 4008 independent reflections |
Radiation source: fine-focus sealed tube | 3342 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ϕ and ω scan | θmax = 26.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.849, Tmax = 0.876 | k = −26→26 |
13412 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.126 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0694P)2 + 1.0128P] where P = (Fo2 + 2Fc2)/3 |
4008 reflections | (Δ/σ)max < 0.001 |
228 parameters | Δρmax = 0.88 e Å−3 |
0 restraints | Δρmin = −0.63 e Å−3 |
C16H22Cl4N2O2S | V = 2089.39 (19) Å3 |
Mr = 448.22 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.9238 (4) Å | µ = 0.68 mm−1 |
b = 21.1712 (11) Å | T = 298 K |
c = 12.6186 (7) Å | 0.25 × 0.22 × 0.20 mm |
β = 99.238 (1)° |
Bruker APEXII area-detector diffractometer | 4008 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3342 reflections with I > 2σ(I) |
Tmin = 0.849, Tmax = 0.876 | Rint = 0.018 |
13412 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.126 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.88 e Å−3 |
4008 reflections | Δρmin = −0.63 e Å−3 |
228 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.6440 (3) | 0.16192 (11) | 0.56639 (16) | 0.0422 (5) | |
C2 | 0.4663 (3) | 0.10478 (11) | 0.41970 (16) | 0.0443 (5) | |
C3 | 0.7314 (3) | 0.11337 (11) | 0.52879 (16) | 0.0443 (5) | |
C4 | 0.6267 (3) | 0.07973 (11) | 0.44327 (16) | 0.0452 (5) | |
C5 | 0.9129 (3) | 0.09640 (14) | 0.5718 (2) | 0.0604 (7) | |
H5A | 0.9596 | 0.1267 | 0.6251 | 0.091* | |
H5B | 0.9788 | 0.0965 | 0.5142 | 0.091* | |
H5C | 0.9166 | 0.0551 | 0.6034 | 0.091* | |
C6 | 0.6887 (4) | 0.02243 (13) | 0.3905 (2) | 0.0622 (7) | |
H6A | 0.5947 | 0.0033 | 0.3441 | 0.093* | |
H6B | 0.7362 | −0.0073 | 0.4445 | 0.093* | |
H6C | 0.7749 | 0.0348 | 0.3491 | 0.093* | |
C7 | 0.3109 (3) | 0.08236 (11) | 0.34627 (17) | 0.0458 (5) | |
C8 | 0.7126 (3) | 0.21071 (11) | 0.64859 (17) | 0.0422 (5) | |
C9 | 0.6710 (3) | 0.13373 (12) | 0.79073 (18) | 0.0500 (6) | |
H9A | 0.7502 | 0.1203 | 0.8534 | 0.060* | |
H9B | 0.6717 | 0.1022 | 0.7350 | 0.060* | |
C10 | 0.4939 (4) | 0.13895 (13) | 0.8188 (2) | 0.0643 (7) | |
H10A | 0.4128 | 0.1483 | 0.7547 | 0.077* | |
H10B | 0.4904 | 0.1732 | 0.8694 | 0.077* | |
C11 | 0.7869 (4) | 0.24259 (14) | 0.8346 (2) | 0.0575 (6) | |
H11A | 0.7587 | 0.2291 | 0.9031 | 0.069* | |
H11B | 0.7269 | 0.2819 | 0.8152 | 0.069* | |
C12 | 0.9744 (4) | 0.25440 (18) | 0.8472 (3) | 0.0832 (10) | |
H12A | 1.0070 | 0.2838 | 0.9059 | 0.100* | |
H12B | 1.0009 | 0.2738 | 0.7822 | 0.100* | |
C13 | 0.4527 (3) | 0.10073 (11) | 0.18708 (17) | 0.0459 (5) | |
H13A | 0.4924 | 0.0670 | 0.1451 | 0.055* | |
H13B | 0.5478 | 0.1132 | 0.2414 | 0.055* | |
C14 | 0.4016 (3) | 0.15598 (12) | 0.11482 (18) | 0.0504 (6) | |
H14A | 0.3109 | 0.1434 | 0.0577 | 0.060* | |
H14B | 0.4985 | 0.1696 | 0.0824 | 0.060* | |
C15 | 0.1637 (3) | 0.05019 (11) | 0.17242 (19) | 0.0497 (6) | |
H15A | 0.1273 | 0.0125 | 0.2063 | 0.060* | |
H15B | 0.1937 | 0.0379 | 0.1038 | 0.060* | |
C16 | 0.0165 (3) | 0.09661 (13) | 0.1536 (2) | 0.0577 (6) | |
H16A | 0.0514 | 0.1342 | 0.1190 | 0.069* | |
H16B | −0.0148 | 0.1089 | 0.2219 | 0.069* | |
Cl1 | 1.09507 (11) | 0.18434 (6) | 0.87299 (8) | 0.0971 (3) | |
Cl2 | 0.43645 (12) | 0.06673 (3) | 0.87659 (6) | 0.0720 (2) | |
Cl3 | −0.16257 (10) | 0.06186 (4) | 0.07135 (7) | 0.0781 (3) | |
Cl4 | 0.32971 (10) | 0.22004 (3) | 0.18815 (6) | 0.0651 (2) | |
N1 | 0.3156 (2) | 0.07637 (9) | 0.24030 (14) | 0.0420 (4) | |
N2 | 0.7258 (2) | 0.19471 (9) | 0.75320 (14) | 0.0434 (4) | |
O1 | 0.1805 (3) | 0.06964 (11) | 0.38336 (14) | 0.0699 (6) | |
O2 | 0.7529 (3) | 0.26329 (8) | 0.62021 (14) | 0.0593 (5) | |
S1 | 0.43739 (8) | 0.16811 (3) | 0.50083 (4) | 0.04896 (18) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0423 (12) | 0.0513 (12) | 0.0326 (10) | 0.0084 (9) | 0.0052 (8) | 0.0022 (9) |
C2 | 0.0492 (13) | 0.0534 (13) | 0.0302 (10) | 0.0059 (10) | 0.0066 (9) | −0.0019 (9) |
C3 | 0.0471 (13) | 0.0543 (13) | 0.0321 (10) | 0.0109 (10) | 0.0082 (9) | 0.0025 (9) |
C4 | 0.0547 (14) | 0.0508 (12) | 0.0307 (10) | 0.0123 (10) | 0.0089 (9) | 0.0026 (9) |
C5 | 0.0496 (15) | 0.0781 (18) | 0.0526 (14) | 0.0201 (13) | 0.0054 (11) | −0.0018 (13) |
C6 | 0.0777 (19) | 0.0630 (16) | 0.0451 (13) | 0.0261 (14) | 0.0073 (12) | −0.0057 (11) |
C7 | 0.0508 (14) | 0.0507 (12) | 0.0361 (11) | 0.0023 (10) | 0.0072 (10) | 0.0025 (9) |
C8 | 0.0369 (12) | 0.0505 (12) | 0.0390 (11) | 0.0072 (9) | 0.0058 (9) | 0.0011 (9) |
C9 | 0.0589 (15) | 0.0538 (13) | 0.0373 (11) | 0.0106 (11) | 0.0077 (10) | 0.0037 (10) |
C10 | 0.0720 (19) | 0.0531 (14) | 0.0737 (17) | 0.0027 (13) | 0.0295 (14) | 0.0103 (13) |
C11 | 0.0556 (16) | 0.0686 (16) | 0.0464 (13) | 0.0011 (12) | 0.0026 (11) | −0.0132 (12) |
C12 | 0.068 (2) | 0.096 (2) | 0.079 (2) | −0.0103 (17) | −0.0062 (16) | −0.0104 (18) |
C13 | 0.0453 (13) | 0.0577 (13) | 0.0357 (11) | 0.0011 (10) | 0.0093 (9) | −0.0033 (9) |
C14 | 0.0542 (15) | 0.0603 (14) | 0.0376 (11) | −0.0078 (11) | 0.0100 (10) | −0.0009 (10) |
C15 | 0.0568 (15) | 0.0478 (12) | 0.0435 (12) | −0.0091 (11) | 0.0049 (10) | −0.0084 (10) |
C16 | 0.0510 (15) | 0.0590 (15) | 0.0592 (15) | −0.0086 (12) | −0.0024 (11) | −0.0083 (12) |
Cl1 | 0.0548 (5) | 0.1416 (9) | 0.0898 (6) | 0.0198 (5) | −0.0041 (4) | 0.0276 (6) |
Cl2 | 0.1030 (6) | 0.0533 (4) | 0.0654 (4) | −0.0134 (3) | 0.0309 (4) | −0.0015 (3) |
Cl3 | 0.0515 (4) | 0.1027 (6) | 0.0773 (5) | −0.0200 (4) | 0.0019 (3) | −0.0212 (4) |
Cl4 | 0.0750 (5) | 0.0475 (3) | 0.0758 (5) | −0.0069 (3) | 0.0213 (4) | −0.0027 (3) |
N1 | 0.0468 (11) | 0.0451 (10) | 0.0340 (9) | −0.0025 (8) | 0.0056 (8) | −0.0029 (7) |
N2 | 0.0432 (11) | 0.0517 (10) | 0.0346 (9) | 0.0023 (8) | 0.0037 (7) | −0.0030 (8) |
O1 | 0.0591 (12) | 0.1096 (17) | 0.0431 (9) | −0.0159 (11) | 0.0148 (8) | 0.0033 (10) |
O2 | 0.0674 (12) | 0.0544 (10) | 0.0566 (10) | −0.0052 (8) | 0.0112 (9) | 0.0066 (8) |
S1 | 0.0447 (3) | 0.0604 (4) | 0.0402 (3) | 0.0135 (3) | 0.0020 (2) | −0.0095 (2) |
C1—C3 | 1.366 (3) | C10—H10A | 0.9700 |
C1—C8 | 1.502 (3) | C10—H10B | 0.9700 |
C1—S1 | 1.717 (2) | C11—N2 | 1.468 (3) |
C2—C4 | 1.365 (3) | C11—C12 | 1.490 (4) |
C2—C7 | 1.494 (3) | C11—H11A | 0.9700 |
C2—S1 | 1.724 (2) | C11—H11B | 0.9700 |
C3—C4 | 1.440 (3) | C12—Cl1 | 1.766 (4) |
C3—C5 | 1.497 (3) | C12—H12A | 0.9700 |
C4—C6 | 1.504 (3) | C12—H12B | 0.9700 |
C5—H5A | 0.9600 | C13—N1 | 1.460 (3) |
C5—H5B | 0.9600 | C13—C14 | 1.498 (3) |
C5—H5C | 0.9600 | C13—H13A | 0.9700 |
C6—H6A | 0.9600 | C13—H13B | 0.9700 |
C6—H6B | 0.9600 | C14—Cl4 | 1.786 (3) |
C6—H6C | 0.9600 | C14—H14A | 0.9700 |
C7—O1 | 1.231 (3) | C14—H14B | 0.9700 |
C7—N1 | 1.350 (3) | C15—N1 | 1.469 (3) |
C8—O2 | 1.227 (3) | C15—C16 | 1.514 (4) |
C8—N2 | 1.350 (3) | C15—H15A | 0.9700 |
C9—N2 | 1.465 (3) | C15—H15B | 0.9700 |
C9—C10 | 1.505 (4) | C16—Cl3 | 1.777 (3) |
C9—H9A | 0.9700 | C16—H16A | 0.9700 |
C9—H9B | 0.9700 | C16—H16B | 0.9700 |
C10—Cl2 | 1.784 (3) | ||
C3—C1—C8 | 127.6 (2) | N2—C11—H11A | 108.8 |
C3—C1—S1 | 112.81 (17) | C12—C11—H11A | 108.8 |
C8—C1—S1 | 119.44 (16) | N2—C11—H11B | 108.8 |
C4—C2—C7 | 131.1 (2) | C12—C11—H11B | 108.8 |
C4—C2—S1 | 112.36 (17) | H11A—C11—H11B | 107.7 |
C7—C2—S1 | 116.12 (17) | C11—C12—Cl1 | 112.3 (3) |
C1—C3—C4 | 111.6 (2) | C11—C12—H12A | 109.1 |
C1—C3—C5 | 124.5 (2) | Cl1—C12—H12A | 109.1 |
C4—C3—C5 | 123.9 (2) | C11—C12—H12B | 109.1 |
C2—C4—C3 | 112.1 (2) | Cl1—C12—H12B | 109.1 |
C2—C4—C6 | 125.2 (2) | H12A—C12—H12B | 107.9 |
C3—C4—C6 | 122.7 (2) | N1—C13—C14 | 114.0 (2) |
C3—C5—H5A | 109.5 | N1—C13—H13A | 108.7 |
C3—C5—H5B | 109.5 | C14—C13—H13A | 108.7 |
H5A—C5—H5B | 109.5 | N1—C13—H13B | 108.7 |
C3—C5—H5C | 109.5 | C14—C13—H13B | 108.7 |
H5A—C5—H5C | 109.5 | H13A—C13—H13B | 107.6 |
H5B—C5—H5C | 109.5 | C13—C14—Cl4 | 110.80 (15) |
C4—C6—H6A | 109.5 | C13—C14—H14A | 109.5 |
C4—C6—H6B | 109.5 | Cl4—C14—H14A | 109.5 |
H6A—C6—H6B | 109.5 | C13—C14—H14B | 109.5 |
C4—C6—H6C | 109.5 | Cl4—C14—H14B | 109.5 |
H6A—C6—H6C | 109.5 | H14A—C14—H14B | 108.1 |
H6B—C6—H6C | 109.5 | N1—C15—C16 | 112.64 (19) |
O1—C7—N1 | 121.0 (2) | N1—C15—H15A | 109.1 |
O1—C7—C2 | 119.5 (2) | C16—C15—H15A | 109.1 |
N1—C7—C2 | 119.6 (2) | N1—C15—H15B | 109.1 |
O2—C8—N2 | 122.0 (2) | C16—C15—H15B | 109.1 |
O2—C8—C1 | 120.3 (2) | H15A—C15—H15B | 107.8 |
N2—C8—C1 | 117.7 (2) | C15—C16—Cl3 | 110.22 (18) |
N2—C9—C10 | 110.34 (19) | C15—C16—H16A | 109.6 |
N2—C9—H9A | 109.6 | Cl3—C16—H16A | 109.6 |
C10—C9—H9A | 109.6 | C15—C16—H16B | 109.6 |
N2—C9—H9B | 109.6 | Cl3—C16—H16B | 109.6 |
C10—C9—H9B | 109.6 | H16A—C16—H16B | 108.1 |
H9A—C9—H9B | 108.1 | C7—N1—C13 | 124.28 (19) |
C9—C10—Cl2 | 110.00 (19) | C7—N1—C15 | 117.58 (19) |
C9—C10—H10A | 109.7 | C13—N1—C15 | 117.75 (17) |
Cl2—C10—H10A | 109.7 | C8—N2—C9 | 123.80 (19) |
C9—C10—H10B | 109.7 | C8—N2—C11 | 118.4 (2) |
Cl2—C10—H10B | 109.7 | C9—N2—C11 | 117.63 (19) |
H10A—C10—H10B | 108.2 | C1—S1—C2 | 91.11 (11) |
N2—C11—C12 | 113.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14B···O2i | 0.97 | 2.45 | 3.257 (3) | 141 |
C14—H14A···Cl1ii | 0.97 | 2.80 | 3.632 (3) | 145 |
C6—H6B···O1iii | 0.96 | 2.54 | 3.474 (3) | 166 |
C5—H5B···O1iv | 0.96 | 2.54 | 3.477 (3) | 165 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x−1, y, z−1; (iii) −x+1, −y, −z+1; (iv) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C16H22Cl4N2O2S |
Mr | 448.22 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 7.9238 (4), 21.1712 (11), 12.6186 (7) |
β (°) | 99.238 (1) |
V (Å3) | 2089.39 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.68 |
Crystal size (mm) | 0.25 × 0.22 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.849, 0.876 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13412, 4008, 3342 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.126, 1.04 |
No. of reflections | 4008 |
No. of parameters | 228 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.88, −0.63 |
Computer programs: , SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXLTL (Sheldrick, 2008), APEX2 (Bruker, 2004) and publCIF (Westrip, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14B···O2i | 0.97 | 2.45 | 3.257 (3) | 140.5 |
C14—H14A···Cl1ii | 0.97 | 2.80 | 3.632 (3) | 144.6 |
C6—H6B···O1iii | 0.96 | 2.54 | 3.474 (3) | 165.5 |
C5—H5B···O1iv | 0.96 | 2.54 | 3.477 (3) | 165.1 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x−1, y, z−1; (iii) −x+1, −y, −z+1; (iv) x+1, y, z. |
Acknowledgements
The authors thank the Southwest University (grant Nos. SWUB2006018, XSGX0602 and SWUF2007023) and the Natural Science Foundation of Chongqing (grant Nos. 2007BB5369, 2006BB4341) for financial support.
References
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Nitrogen mustard agents are one of the most important antitumor dugs, and have been widely used for the treatment of solid neoplastic and leukemia tumor for many years. The incorporation of amido and/or conjugated moiety into nitrogen mustards often helps to decrease the toxicity and improve the target affinity due to the dispersion of N atom electron atmosphere density (Zhuang et al., 2008). Herein, in order to find new antitumor dugs, we have successfully synthesized the title compound (I) by an acylation reaction of bis(2-chloroethyl)amine wiht 3,4-dimethylthiophene-2,5-dicarbonyl dichloride (Luo et al., 2007) and fully characterized by single-crystal X-ray diffraction.
The molecular structure of the title compound is shown in Fig. 1. Single crystal analysis revealed that two imide groups of the title compound adopt trans-conformation arrangement (Dong et al., 2006) compared with the central thiophene ring, so the four terminal 2-chloroethyl arms are oriented in the different orientation. As indicated in Fig. 2, in the solid state, these moleculers are bonded together with Cl···H—C hydrogen bonds into an H-bonding-driven three-dimensional network, corresponding O(7)···H(3 A), O(7)···O(3), and O(7)···H(3 A)—O(3) data are 2.33 Å, 3.19 Å and 145.1°, respectively.