organic compounds
Redetermination and
of 6-hydroxysalvinoloneaX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
The H)-one], C20H26O4, has been reported previously [Salae et al. (2009). Acta Cryst. E65, o2379–o2380], but the could not be determined as there was no significant using data collected with Mo radiation. The has now been determined by of the with data collected using Cu radiation. The at position 4a of the diterpenoid is (R)-methyl; other features of the molecule and its crystal packing are similar to those previously described.
of the title compound [systematic name: 5,6,10-trihydroxy-7-isopropyl-1,1,4a-trimethyl-2,3,4,4a-tetrahydrophenanthren-9(1Related literature
For background to diterpenes, see: Fraga et al. (2005); Hueso-Rodríguez et al. (1983) and Topcu & Ulubelen (1996). For the previous determination, see: Salae et al. (2009). For bond-length data, see: Allen et al. (1987). For hydrogen-bond motifs, see: Bernstein et al. (1995). For puckering parameters, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809053197/sj2711sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809053197/sj2711Isup2.hkl
The H atom attached to C15 was placed in a calculated position with d(C—H) = 0.96 Å and the Uiso values was constrained to be 1.2Ueq of the
The remaining H atoms were located from the difference map and isotropically refined. The highest residual electron density peak is located at 0.73 Å from C13 and the deepest hole is located at 0.50 Å from O1. 1609 Friedel pairs were used to determine the absolute configuration.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The structure of (I), showing 50% probability displacement ellipsoids and the atom-numbering scheme. Intramolecular hydrogen bonds are shown as dashed lines. | |
Fig. 2. The crystal packing of (I) viewed along the a axis, showing screw chains along the [0 0 1] direction. Hydrogen bonds are shown as dashed lines. |
C20H26O4 | F(000) = 712 |
Mr = 330.41 | Dx = 1.271 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 2622 reflections |
a = 9.4908 (1) Å | θ = 5.7–62.5° |
b = 13.1684 (2) Å | µ = 0.70 mm−1 |
c = 13.8105 (2) Å | T = 100 K |
V = 1726.02 (4) Å3 | Block, colorless |
Z = 4 | 0.35 × 0.30 × 0.27 mm |
Bruker APEX Duo CCD area-detector diffractometer | 2622 independent reflections |
Radiation source: sealed tube | 2581 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ϕ and ω scans | θmax = 62.5°, θmin = 5.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→10 |
Tmin = 0.790, Tmax = 0.835 | k = −15→15 |
6410 measured reflections | l = −15→11 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.089 | w = 1/[σ2(Fo2) + (0.062P)2 + 0.1924P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
2622 reflections | Δρmax = 0.22 e Å−3 |
317 parameters | Δρmin = −0.22 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 1609 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.06 (17) |
C20H26O4 | V = 1726.02 (4) Å3 |
Mr = 330.41 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 9.4908 (1) Å | µ = 0.70 mm−1 |
b = 13.1684 (2) Å | T = 100 K |
c = 13.8105 (2) Å | 0.35 × 0.30 × 0.27 mm |
Bruker APEX Duo CCD area-detector diffractometer | 2622 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2581 reflections with I > 2σ(I) |
Tmin = 0.790, Tmax = 0.835 | Rint = 0.023 |
6410 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.089 | Δρmax = 0.22 e Å−3 |
S = 1.09 | Δρmin = −0.22 e Å−3 |
2622 reflections | Absolute structure: Flack (1983), 1609 Friedel pairs |
317 parameters | Absolute structure parameter: 0.06 (17) |
0 restraints |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.26498 (14) | 0.14479 (8) | 0.64508 (8) | 0.0226 (3) | |
H1O1 | 0.266 (3) | 0.2024 (19) | 0.6146 (17) | 0.045 (6)* | |
O2 | 0.25865 (15) | 0.33763 (7) | 0.66855 (7) | 0.0248 (3) | |
O3 | 0.24268 (12) | 0.46642 (8) | 1.11130 (7) | 0.0158 (2) | |
H1O3 | 0.247 (3) | 0.530 (2) | 1.1204 (17) | 0.048 (6)* | |
O4 | 0.25736 (13) | 0.27211 (7) | 1.09810 (8) | 0.0182 (3) | |
H1O4 | 0.257 (3) | 0.3146 (19) | 1.1402 (19) | 0.049 (7)* | |
C1 | 0.14780 (17) | 0.11004 (11) | 0.98596 (11) | 0.0173 (3) | |
H1A | 0.188 (2) | 0.1027 (15) | 1.0541 (15) | 0.028 (5)* | |
H1B | 0.068 (2) | 0.1522 (15) | 0.9886 (15) | 0.026 (5)* | |
C2 | 0.09572 (16) | 0.00499 (11) | 0.95493 (11) | 0.0183 (3) | |
H2A | 0.065 (2) | −0.0370 (17) | 1.0113 (16) | 0.034 (5)* | |
H2B | 0.013 (2) | 0.0121 (13) | 0.9127 (14) | 0.023 (4)* | |
C3 | 0.20793 (16) | −0.05336 (11) | 0.89923 (11) | 0.0161 (3) | |
H3A | 0.1764 (18) | −0.1257 (14) | 0.8862 (12) | 0.016 (4)* | |
H3B | 0.291 (2) | −0.0611 (15) | 0.9379 (15) | 0.026 (5)* | |
C4 | 0.24229 (18) | −0.00042 (10) | 0.80241 (10) | 0.0157 (3) | |
C5 | 0.24927 (16) | 0.11556 (10) | 0.81588 (11) | 0.0134 (3) | |
C6 | 0.25717 (17) | 0.17835 (11) | 0.73906 (10) | 0.0166 (3) | |
C7 | 0.25656 (17) | 0.28940 (11) | 0.74620 (10) | 0.0165 (3) | |
C8 | 0.25203 (16) | 0.33638 (10) | 0.84151 (10) | 0.0137 (3) | |
C9 | 0.25196 (14) | 0.27429 (10) | 0.92394 (10) | 0.0125 (3) | |
C10 | 0.26072 (15) | 0.15823 (10) | 0.91813 (10) | 0.0134 (3) | |
C11 | 0.25250 (15) | 0.32477 (11) | 1.01271 (10) | 0.0128 (3) | |
C12 | 0.24735 (15) | 0.43145 (11) | 1.01817 (9) | 0.0127 (3) | |
C13 | 0.24955 (15) | 0.49239 (10) | 0.93545 (10) | 0.0134 (3) | |
C14 | 0.25173 (16) | 0.44233 (10) | 0.84755 (10) | 0.0144 (3) | |
H14A | 0.257 (2) | 0.4837 (13) | 0.7891 (12) | 0.017 (4)* | |
C15 | 0.24936 (17) | 0.60773 (10) | 0.94334 (10) | 0.0157 (3) | |
H15A | 0.3062 | 0.6260 | 1.0000 | 0.019* | |
C16 | 0.3152 (2) | 0.65897 (12) | 0.85566 (14) | 0.0298 (4) | |
H16A | 0.412 (2) | 0.6255 (18) | 0.8398 (18) | 0.050 (7)* | |
H16B | 0.3240 (19) | 0.7331 (16) | 0.8679 (15) | 0.029 (5)* | |
H16C | 0.255 (2) | 0.6499 (16) | 0.8008 (16) | 0.036 (5)* | |
C17 | 0.09970 (16) | 0.64673 (11) | 0.96111 (13) | 0.0218 (4) | |
H17A | 0.059 (2) | 0.6171 (15) | 1.0234 (16) | 0.030 (5)* | |
H17B | 0.039 (2) | 0.6260 (16) | 0.9072 (16) | 0.034 (5)* | |
H17C | 0.0999 (18) | 0.7216 (14) | 0.9708 (13) | 0.021 (4)* | |
C18 | 0.38294 (17) | −0.04049 (11) | 0.76212 (12) | 0.0187 (3) | |
H18A | 0.461 (2) | −0.0244 (14) | 0.8056 (14) | 0.023 (4)* | |
H18B | 0.4045 (19) | −0.0088 (14) | 0.6976 (13) | 0.021 (4)* | |
H18C | 0.3732 (19) | −0.1131 (16) | 0.7533 (14) | 0.024 (5)* | |
C19 | 0.12291 (17) | −0.02847 (12) | 0.73087 (12) | 0.0210 (4) | |
H19A | 0.138 (2) | 0.0003 (14) | 0.6670 (14) | 0.026 (5)* | |
H19B | 0.028 (2) | −0.0059 (14) | 0.7535 (15) | 0.029 (5)* | |
H19C | 0.1167 (18) | −0.1038 (14) | 0.7267 (13) | 0.017 (4)* | |
C20 | 0.41254 (15) | 0.13291 (11) | 0.95429 (11) | 0.0159 (3) | |
H20A | 0.481 (2) | 0.1651 (14) | 0.9128 (15) | 0.026 (5)* | |
H20B | 0.4291 (18) | 0.0620 (15) | 0.9528 (13) | 0.021 (4)* | |
H20C | 0.425 (2) | 0.1618 (14) | 1.0211 (15) | 0.028 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0463 (7) | 0.0115 (5) | 0.0101 (5) | 0.0010 (5) | 0.0012 (5) | −0.0010 (4) |
O2 | 0.0506 (7) | 0.0120 (5) | 0.0117 (5) | 0.0003 (5) | 0.0000 (5) | 0.0024 (4) |
O3 | 0.0281 (6) | 0.0087 (5) | 0.0106 (5) | −0.0025 (5) | 0.0021 (4) | −0.0030 (4) |
O4 | 0.0331 (6) | 0.0110 (5) | 0.0104 (5) | −0.0001 (5) | −0.0017 (5) | 0.0004 (4) |
C1 | 0.0216 (8) | 0.0100 (7) | 0.0203 (8) | 0.0003 (6) | 0.0057 (6) | 0.0015 (6) |
C2 | 0.0203 (8) | 0.0157 (7) | 0.0187 (7) | −0.0018 (6) | 0.0050 (6) | 0.0034 (6) |
C3 | 0.0206 (7) | 0.0095 (7) | 0.0181 (8) | −0.0006 (5) | −0.0007 (6) | −0.0005 (6) |
C4 | 0.0212 (7) | 0.0117 (7) | 0.0143 (7) | 0.0001 (6) | 0.0000 (6) | −0.0013 (5) |
C5 | 0.0139 (7) | 0.0109 (7) | 0.0154 (7) | 0.0012 (6) | −0.0008 (6) | −0.0002 (5) |
C6 | 0.0239 (8) | 0.0129 (7) | 0.0129 (7) | 0.0011 (6) | 0.0004 (6) | −0.0022 (5) |
C7 | 0.0248 (8) | 0.0121 (7) | 0.0125 (7) | −0.0001 (7) | −0.0012 (6) | 0.0014 (5) |
C8 | 0.0156 (7) | 0.0135 (7) | 0.0122 (7) | −0.0001 (6) | −0.0005 (6) | 0.0002 (5) |
C9 | 0.0111 (7) | 0.0120 (7) | 0.0142 (7) | 0.0002 (5) | −0.0012 (6) | 0.0005 (5) |
C10 | 0.0165 (7) | 0.0119 (7) | 0.0120 (7) | 0.0009 (6) | 0.0016 (6) | 0.0005 (6) |
C11 | 0.0145 (7) | 0.0114 (7) | 0.0124 (7) | −0.0001 (6) | 0.0004 (6) | 0.0013 (5) |
C12 | 0.0143 (7) | 0.0130 (7) | 0.0109 (7) | −0.0011 (6) | −0.0001 (6) | −0.0021 (5) |
C13 | 0.0136 (6) | 0.0110 (7) | 0.0156 (7) | −0.0003 (6) | 0.0011 (6) | 0.0015 (5) |
C14 | 0.0193 (7) | 0.0112 (6) | 0.0127 (7) | 0.0005 (6) | 0.0004 (6) | 0.0014 (6) |
C15 | 0.0245 (8) | 0.0087 (7) | 0.0139 (7) | −0.0007 (6) | −0.0013 (6) | −0.0016 (5) |
C16 | 0.0545 (12) | 0.0102 (8) | 0.0247 (9) | 0.0006 (8) | 0.0132 (9) | −0.0004 (7) |
C17 | 0.0255 (8) | 0.0122 (7) | 0.0277 (9) | 0.0021 (7) | −0.0027 (7) | −0.0010 (7) |
C18 | 0.0243 (8) | 0.0116 (7) | 0.0200 (8) | 0.0024 (6) | 0.0030 (7) | 0.0005 (6) |
C19 | 0.0273 (9) | 0.0148 (8) | 0.0208 (8) | −0.0025 (7) | −0.0050 (7) | −0.0025 (6) |
C20 | 0.0194 (7) | 0.0106 (7) | 0.0177 (7) | 0.0018 (6) | −0.0036 (6) | −0.0010 (6) |
O1—C6 | 1.3732 (17) | C9—C11 | 1.394 (2) |
O1—H1O1 | 0.87 (3) | C9—C10 | 1.5327 (18) |
O2—C7 | 1.2465 (18) | C10—C20 | 1.561 (2) |
O3—C12 | 1.3669 (16) | C11—C12 | 1.408 (2) |
O3—H1O3 | 0.85 (3) | C12—C13 | 1.3962 (19) |
O4—C11 | 1.3688 (16) | C13—C14 | 1.381 (2) |
O4—H1O4 | 0.81 (3) | C13—C15 | 1.5228 (17) |
C1—C2 | 1.530 (2) | C14—H14A | 0.975 (18) |
C1—C10 | 1.558 (2) | C15—C16 | 1.520 (2) |
C1—H1A | 1.02 (2) | C15—C17 | 1.530 (2) |
C1—H1B | 0.94 (2) | C15—H15A | 0.9800 |
C2—C3 | 1.522 (2) | C16—H16A | 1.04 (2) |
C2—H2A | 1.00 (2) | C16—H16B | 0.99 (2) |
C2—H2B | 0.99 (2) | C16—H16C | 0.96 (2) |
C3—C4 | 1.543 (2) | C17—H17A | 1.02 (2) |
C3—H3A | 1.014 (19) | C17—H17B | 0.98 (2) |
C3—H3B | 0.96 (2) | C17—H17C | 0.996 (18) |
C4—C18 | 1.540 (2) | C18—H18A | 0.98 (2) |
C4—C5 | 1.5399 (18) | C18—H18B | 1.005 (19) |
C4—C19 | 1.548 (2) | C18—H18C | 0.97 (2) |
C5—C6 | 1.347 (2) | C19—H19A | 0.970 (19) |
C5—C10 | 1.5236 (19) | C19—H19B | 1.00 (2) |
C6—C7 | 1.4656 (19) | C19—H19C | 0.995 (18) |
C7—C8 | 1.455 (2) | C20—H20A | 0.97 (2) |
C8—C14 | 1.3978 (19) | C20—H20B | 0.947 (19) |
C8—C9 | 1.4016 (19) | C20—H20C | 1.00 (2) |
C6—O1—H1O1 | 100.3 (15) | O4—C11—C9 | 121.07 (12) |
C12—O3—H1O3 | 118.0 (16) | O4—C11—C12 | 117.42 (12) |
C11—O4—H1O4 | 105.7 (17) | C9—C11—C12 | 121.51 (12) |
C2—C1—C10 | 114.96 (12) | O3—C12—C13 | 125.22 (12) |
C2—C1—H1A | 107.1 (11) | O3—C12—C11 | 112.81 (12) |
C10—C1—H1A | 109.4 (11) | C13—C12—C11 | 121.96 (12) |
C2—C1—H1B | 106.5 (12) | C14—C13—C12 | 116.42 (13) |
C10—C1—H1B | 109.7 (12) | C14—C13—C15 | 122.60 (13) |
H1A—C1—H1B | 108.9 (17) | C12—C13—C15 | 120.98 (12) |
C3—C2—C1 | 111.83 (12) | C13—C14—C8 | 121.92 (13) |
C3—C2—H2A | 108.6 (12) | C13—C14—H14A | 117.5 (10) |
C1—C2—H2A | 112.2 (12) | C8—C14—H14A | 120.6 (10) |
C3—C2—H2B | 108.0 (10) | C16—C15—C13 | 112.65 (12) |
C1—C2—H2B | 109.8 (11) | C16—C15—C17 | 111.12 (14) |
H2A—C2—H2B | 106.2 (16) | C13—C15—C17 | 110.32 (13) |
C2—C3—C4 | 110.96 (12) | C16—C15—H15A | 107.5 |
C2—C3—H3A | 111.0 (10) | C13—C15—H15A | 107.5 |
C4—C3—H3A | 109.4 (10) | C17—C15—H15A | 107.5 |
C2—C3—H3B | 110.3 (12) | C15—C16—H16A | 110.0 (13) |
C4—C3—H3B | 110.9 (12) | C15—C16—H16B | 109.6 (12) |
H3A—C3—H3B | 104.0 (15) | H16A—C16—H16B | 112.1 (16) |
C18—C4—C5 | 110.26 (13) | C15—C16—H16C | 109.2 (13) |
C18—C4—C3 | 109.98 (12) | H16A—C16—H16C | 108.0 (18) |
C5—C4—C3 | 110.64 (12) | H16B—C16—H16C | 107.9 (17) |
C18—C4—C19 | 108.79 (12) | C15—C17—H17A | 110.9 (11) |
C5—C4—C19 | 110.20 (12) | C15—C17—H17B | 109.4 (12) |
C3—C4—C19 | 106.89 (12) | H17A—C17—H17B | 108.1 (16) |
C6—C5—C10 | 119.96 (12) | C15—C17—H17C | 110.6 (10) |
C6—C5—C4 | 121.06 (13) | H17A—C17—H17C | 105.5 (15) |
C10—C5—C4 | 118.74 (12) | H17B—C17—H17C | 112.2 (16) |
C5—C6—O1 | 123.36 (13) | C4—C18—H18A | 111.3 (11) |
C5—C6—C7 | 124.01 (13) | C4—C18—H18B | 110.8 (10) |
O1—C6—C7 | 112.63 (12) | H18A—C18—H18B | 107.4 (15) |
O2—C7—C8 | 124.20 (12) | C4—C18—H18C | 107.5 (11) |
O2—C7—C6 | 116.78 (12) | H18A—C18—H18C | 111.3 (16) |
C8—C7—C6 | 119.02 (12) | H18B—C18—H18C | 108.5 (16) |
C14—C8—C9 | 122.27 (12) | C4—C19—H19A | 112.3 (11) |
C14—C8—C7 | 118.58 (12) | C4—C19—H19B | 113.0 (12) |
C9—C8—C7 | 119.13 (12) | H19A—C19—H19B | 107.5 (16) |
C11—C9—C8 | 115.85 (12) | C4—C19—H19C | 108.5 (10) |
C11—C9—C10 | 121.41 (12) | H19A—C19—H19C | 110.1 (15) |
C8—C9—C10 | 122.62 (12) | H19B—C19—H19C | 105.1 (14) |
C5—C10—C9 | 114.36 (11) | C10—C20—H20A | 109.9 (11) |
C5—C10—C1 | 110.97 (12) | C10—C20—H20B | 110.9 (11) |
C9—C10—C1 | 109.71 (12) | H20A—C20—H20B | 107.8 (15) |
C5—C10—C20 | 106.47 (12) | C10—C20—H20C | 108.6 (11) |
C9—C10—C20 | 104.26 (12) | H20A—C20—H20C | 107.5 (16) |
C1—C10—C20 | 110.82 (11) | H20B—C20—H20C | 112.0 (16) |
C10—C1—C2—C3 | 28.97 (17) | C6—C5—C10—C20 | −103.23 (16) |
C1—C2—C3—C4 | −64.94 (16) | C4—C5—C10—C20 | 71.28 (16) |
C2—C3—C4—C18 | 163.23 (12) | C11—C9—C10—C5 | 176.24 (12) |
C2—C3—C4—C5 | 41.17 (16) | C8—C9—C10—C5 | −7.9 (2) |
C2—C3—C4—C19 | −78.83 (15) | C11—C9—C10—C1 | 50.82 (18) |
C18—C4—C5—C6 | 67.99 (19) | C8—C9—C10—C1 | −133.35 (13) |
C3—C4—C5—C6 | −170.13 (14) | C11—C9—C10—C20 | −67.90 (16) |
C19—C4—C5—C6 | −52.1 (2) | C8—C9—C10—C20 | 107.93 (15) |
C18—C4—C5—C10 | −106.46 (15) | C2—C1—C10—C5 | 25.05 (17) |
C3—C4—C5—C10 | 15.42 (19) | C2—C1—C10—C9 | 152.39 (13) |
C19—C4—C5—C10 | 133.43 (14) | C2—C1—C10—C20 | −93.02 (15) |
C10—C5—C6—O1 | 171.82 (14) | C8—C9—C11—O4 | −177.74 (13) |
C4—C5—C6—O1 | −2.6 (2) | C10—C9—C11—O4 | −1.6 (2) |
C10—C5—C6—C7 | −9.0 (2) | C8—C9—C11—C12 | 2.6 (2) |
C4—C5—C6—C7 | 176.61 (15) | C10—C9—C11—C12 | 178.69 (13) |
C5—C6—C7—O2 | −177.13 (14) | O4—C11—C12—O3 | −2.3 (2) |
O1—C6—C7—O2 | 2.1 (2) | C9—C11—C12—O3 | 177.35 (13) |
C5—C6—C7—C8 | 2.2 (3) | O4—C11—C12—C13 | 176.60 (12) |
O1—C6—C7—C8 | −178.55 (12) | C9—C11—C12—C13 | −3.7 (2) |
O2—C7—C8—C14 | −0.8 (2) | O3—C12—C13—C14 | −178.86 (14) |
C6—C7—C8—C14 | 179.89 (14) | C11—C12—C13—C14 | 2.3 (2) |
O2—C7—C8—C9 | −179.14 (16) | O3—C12—C13—C15 | 1.1 (2) |
C6—C7—C8—C9 | 1.6 (2) | C11—C12—C13—C15 | −177.71 (13) |
C14—C8—C9—C11 | −0.4 (2) | C12—C13—C14—C8 | −0.1 (2) |
C7—C8—C9—C11 | 177.83 (14) | C15—C13—C14—C8 | 179.93 (14) |
C14—C8—C9—C10 | −176.45 (13) | C9—C8—C14—C13 | −0.8 (2) |
C7—C8—C9—C10 | 1.8 (2) | C7—C8—C14—C13 | −179.08 (14) |
C6—C5—C10—C9 | 11.3 (2) | C14—C13—C15—C16 | −25.5 (2) |
C4—C5—C10—C9 | −174.14 (12) | C12—C13—C15—C16 | 154.57 (15) |
C6—C5—C10—C1 | 136.09 (15) | C14—C13—C15—C17 | 99.31 (17) |
C4—C5—C10—C1 | −49.39 (18) | C12—C13—C15—C17 | −80.62 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O2 | 0.87 (2) | 1.93 (2) | 2.5607 (14) | 128 (2) |
O3—H1O3···O2i | 0.85 (3) | 1.87 (3) | 2.6988 (14) | 167 (2) |
O4—H1O4···O3 | 0.81 (3) | 2.04 (3) | 2.5690 (14) | 123 (2) |
C14—H14A···O3ii | 0.975 (17) | 2.542 (17) | 3.4774 (17) | 160.8 (14) |
C15—H15A···O2i | 0.98 | 2.45 | 3.1933 (17) | 132 |
C18—H18B···O1 | 1.005 (18) | 2.524 (18) | 3.1335 (19) | 118.7 (13) |
C19—H19A···O1 | 0.971 (19) | 2.273 (19) | 2.903 (2) | 121.7 (14) |
C20—H20C···O4 | 1.01 (2) | 2.403 (19) | 3.0779 (18) | 123.9 (14) |
Symmetry codes: (i) −x+1/2, −y+1, z+1/2; (ii) −x+1/2, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C20H26O4 |
Mr | 330.41 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 9.4908 (1), 13.1684 (2), 13.8105 (2) |
V (Å3) | 1726.02 (4) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.70 |
Crystal size (mm) | 0.35 × 0.30 × 0.27 |
Data collection | |
Diffractometer | Bruker APEX Duo CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.790, 0.835 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6410, 2622, 2581 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.575 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.089, 1.09 |
No. of reflections | 2622 |
No. of parameters | 317 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.22 |
Absolute structure | Flack (1983), 1609 Friedel pairs |
Absolute structure parameter | 0.06 (17) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O2 | 0.87 (2) | 1.93 (2) | 2.5607 (14) | 128 (2) |
O3—H1O3···O2i | 0.85 (3) | 1.87 (3) | 2.6988 (14) | 167 (2) |
O4—H1O4···O3 | 0.81 (3) | 2.04 (3) | 2.5690 (14) | 123 (2) |
C14—H14A···O3ii | 0.975 (17) | 2.542 (17) | 3.4774 (17) | 160.8 (14) |
C15—H15A···O2i | 0.98 | 2.45 | 3.1933 (17) | 132 |
C18—H18B···O1 | 1.005 (18) | 2.524 (18) | 3.1335 (19) | 118.7 (13) |
C19—H19A···O1 | 0.971 (19) | 2.273 (19) | 2.903 (2) | 121.7 (14) |
C20—H20C···O4 | 1.01 (2) | 2.403 (19) | 3.0779 (18) | 123.9 (14) |
Symmetry codes: (i) −x+1/2, −y+1, z+1/2; (ii) −x+1/2, −y+1, z−1/2. |
Acknowledgements
The authors thank the Malaysian Government and Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012. Mr Abdul Wahab Salae is acknowledged for supplying the sample of 6-hydroxysalvinolone.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. CrossRef CAS Web of Science IUCr Journals Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Fraga, B. M., Díaz, C. E., Guadaño, A. & González-Coloma, A. (2005). J. Agric. Food. Chem.. 53, 5200–5206. Web of Science CrossRef PubMed CAS Google Scholar
Hueso-Rodríguez, J. A., Jimeno, M. L., Rodríguez, B., Savona, G. & Bruno, M. (1983). Phytochemistry, 22, 2005–2009. Google Scholar
Salae, A. W., Chantrapromma, S., Fun, H.-K. & Karalai, C. (2009). Acta Cryst. E65, o2379–o2380. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Topcu, G. & Ulubelen, A. (1996). J. Nat. Prod. 59, 734–737. CrossRef CAS Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title diterpenoid compound (I) known as 6-hydroxysalvinolone (Topcu & Ulubelen, 1996) or 14-deoxycoleon U (Fraga et al., 2005; Hueso-Rodríguez et al., 1983), was isolated from the roots of Premna obtusifolia, a Thai manglove plant which was collected from Satun province in the Southern part of Thailand. Its crystal structure has been reported (Salae et al., 2009) but the absolute configuration could not be determined due to no large anomalous dispersion using a data set collected with Mo radiation. Data on the same sample was recollected using Cu radiation with our newly-installed Bruker Apex-Duo CCD diffractometer and the absolute configuration at atom C10 (or the 4a position) was determined as (R)-methyl making use of the large anomalous scattering of Cu Kα X-radiation with the Flack parameter being refined to 0.06 (17). We report herein the crystal structure of (I) determined from the Cu data.
Fig. 1 shows the molecular structure of (I); the ring conformations, bond lengths and angles are almost identical to those previously described (Salae et al., 2009).
Fig. 2 shows the crystal packing of (I), intermolecular O—H···O hydrogen bonds and weak C—H···O interactions (Table 1) linked the molecules into infinite one dimensional screw chains along the [0 0 1] direction. This feature and also the O—H···O hydrogen bonds and weak C—H···O interactions are also similar to those in the previous report by Salae et al. (2009).