organic compounds
2-{[(4-Methoxyphenyl)dimethylsilyl]methyl}isoindoline-1,3-dione
aDepartment of Chemistry, University of Wisconsin–Madison, 1101 University Ave, Madison, Wisconsin 53706, USA
*Correspondence e-mail: iguzei@chem.wisc.edu
In the course of our studies of silicon-containing anticancer compounds, the title compound, C18H19NO3Si, was synthesized. The molecular geometry including bond distances and angles involving the Si atoms are typical. Torsion angles associated with the isoindoline ring and the silyl group [C—N—Cmethylene—Si = 90.5 (2) and −93.1 (2)°] indicate that there is no interaction between the O and Si atoms despite silicon's high affinity for oxygen.
Related literature
For literature related to drug design see: Bains & Tacke (2003); Bikzhanova et al. (2007); Franz (2007); Franz et al. (2007); Gately & West (2007); Guzei, Spencer, Zakai & Lynch (2010); Guzei, Spencer & Zakai (2010); Latxague & Leger (2004); Lee et al. (1993, 1996); Murai et al. (1998); Showell & Mills (2003); Tacke & Zilch (1986); Tsuge et al. (1985); Yoon et al. (1991, 1992, 1997). For a description of the Cambridge Structural Database, see: Allen (2002). Bond distances and angles were confirmed to be typical by a Mogul structural check (Bruno et al., 2004).
Experimental
Crystal data
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Data collection: APEX2 and GIS (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL, OLEX2 (Dolomanov et al., 2009) and FCF_filter (Guzei, 2007); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, modiCIFer (Guzei, 2007) and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536809054129/zs2023sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809054129/zs2023Isup2.hkl
The protocol described by Tsuge and co-workers (Tsuge et al., 1985) was adopted. The required amount of potassium phthalimide (4.79 g, 25.88 mmol, 1.1 equiv) was placed into a 100 ml round-bottom flask, which was then sealed and flushed with nitrogen three times. Dry DMF (36 ml) was syringed into the flask followed by the addition of 4-methoxybenzylchloride (5.05 g, 23.53 mmol, 1 equiv.) The reaction was heated at 60°C for 6 h and the resulting mixture was then allowed to cool to room temperature. This slurry was poured onto a minimum quantity of water and extracted 3–5 times with ethyl ether. The organic extracts were subsequently collected, dried with magnesium sulfate, and filtered. The filtrate was mixed with silica gel and evaporated under reduced pressure to afford a powder of silica gel. This powder was loaded onto a dry-packed silica gel column and eluted using a gradient column. The fractions of interest were mobilized using a 8:2 hexane:ethyl acetate mixture but did not completely elute until a 1:1 hex:EtOAc mixture was employed. The fractions were then combined to afford the desired compound. Further recrystallization from dichloromethane afforded cream colored crystals (5.35 g, 16.44 mmol, 70% yield) for X-ray crystallography. Manipulation of air and moisture sensitive compounds was performed using standard high-vacuum line techniques. All solvents and reagents were obtained from Aldrich. 4-Methoxybenzylchloride was purchased from Acros Organics. 1H NMR spectra were obtained on a Varian Unity 500 spectrometer, 13C {H} NMR spectra were obtained on a Varian 500 spectrometer operating at 125 MHz, 29Si {H} NMR spectra were obtained on a Varian Unity spectrometer operating at 99 MHz. Mass spectra were determined on a Waters (Micromass) AutoSpec δ 0.36 (s, 6H, CH3), 3.35 (s, 2H, CH2), 3.77 (s, 3H, OMe), 6.87 (m, 2H, ArH), 7.47 (m, 2H, ArH), 7.64 (dd, J=5.45, 3.01 Hz, 2H, ArH), 7.75 (dd, J=5.38, 3.07 Hz, 2H, ArH); 13C NMR (125 MHz, CDCl3) δ -2.9 (SiCH3), 28.8 (CH2), 55.0 (OMe), 113.6 (CH), 122.8 (CH), 127.1 (CH), 132.2 (CH), 133.5 (CH), 135.2 (CH), 160.7 (CH), 168.4 (CH); 29Si NMR (99 MHz, CDCl3) δ -3.17 (SiMe2PhOMe); MS (EI+) m/z (rel. intensity %) 324 (M-1, 9), 310 (M—Me, 100), 218 (56), 165 (75); HRMS (EI+): calcd. for C18H19NO3Si (M+) 325.1129, found (M—Me)+ 310.0894.
Melting points were determined on a Mel-Temp Laboratory Device. mp 75–77°C; 1H NMR (500 MHz, CDCl3)All H-atoms were placed in idealized locations and refined as riding with appropriate thermal displacement coefficients Uiso(H) = 1.2 or 1.5 times Ueq(bearing atom). The data were collected at room temperature on a Bruker SMART X2S diffractometer in the automated mode and manually processed thereafter.
Data collection: GIS (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009) and FCF_filter (Guzei, 2007); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), modiCIFer (Guzei, 2007) and publCIF (Westrip, 2010).Fig. 1. Molecular structure of (I). The thermal ellipsoids are shown at 50% probability level. |
C18H19NO3Si | F(000) = 688 |
Mr = 325.43 | Dx = 1.275 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3201 reflections |
a = 10.2713 (16) Å | θ = 2.3–24.8° |
b = 14.061 (3) Å | µ = 0.15 mm−1 |
c = 12.069 (2) Å | T = 300 K |
β = 103.355 (6)° | Block, colourless |
V = 1695.9 (5) Å3 | 0.50 × 0.40 × 0.23 mm |
Z = 4 |
Bruker SMART X2S diffractometer | 3197 independent reflections |
Radiation source: micro-focus sealed tube | 2338 reflections with I > 2σ(I) |
Doubly curved silicon crystal monochromator | Rint = 0.042 |
ω scans | θmax = 25.7°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→12 |
Tmin = 0.928, Tmax = 0.966 | k = −17→17 |
11394 measured reflections | l = −11→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 0.96 | w = 1/[σ2(Fo2) + (0.0812P)2 + 0.1363P] where P = (Fo2 + 2Fc2)/3 |
3197 reflections | (Δ/σ)max < 0.001 |
211 parameters | Δρmax = 0.21 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C18H19NO3Si | V = 1695.9 (5) Å3 |
Mr = 325.43 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.2713 (16) Å | µ = 0.15 mm−1 |
b = 14.061 (3) Å | T = 300 K |
c = 12.069 (2) Å | 0.50 × 0.40 × 0.23 mm |
β = 103.355 (6)° |
Bruker SMART X2S diffractometer | 3197 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2338 reflections with I > 2σ(I) |
Tmin = 0.928, Tmax = 0.966 | Rint = 0.042 |
11394 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 0.96 | Δρmax = 0.21 e Å−3 |
3197 reflections | Δρmin = −0.26 e Å−3 |
211 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Si1 | −0.00370 (6) | 0.19378 (4) | 0.82075 (5) | 0.0462 (2) | |
O1 | −0.34928 (17) | 0.48107 (11) | 0.99174 (16) | 0.0762 (5) | |
O2 | 0.14405 (16) | −0.05076 (11) | 0.93970 (14) | 0.0674 (5) | |
O3 | 0.38001 (16) | 0.20812 (11) | 0.87061 (17) | 0.0779 (5) | |
N1 | 0.23597 (15) | 0.09334 (11) | 0.90879 (13) | 0.0439 (4) | |
C1 | −0.3261 (3) | 0.57979 (18) | 0.9894 (3) | 0.0880 (9) | |
H1A | −0.2364 | 0.5935 | 1.0307 | 0.132* | |
H1B | −0.3884 | 0.6127 | 1.0240 | 0.132* | |
H1C | −0.3377 | 0.6004 | 0.9119 | 0.132* | |
C2 | −0.2647 (2) | 0.42125 (15) | 0.95212 (18) | 0.0518 (5) | |
C3 | −0.2964 (2) | 0.32606 (16) | 0.9526 (2) | 0.0603 (6) | |
H3 | −0.3712 | 0.3068 | 0.9779 | 0.072* | |
C4 | −0.2182 (2) | 0.25971 (15) | 0.91604 (18) | 0.0532 (5) | |
H4 | −0.2403 | 0.1958 | 0.9189 | 0.064* | |
C5 | −0.10617 (18) | 0.28429 (13) | 0.87447 (16) | 0.0426 (5) | |
C6 | −0.0790 (2) | 0.38081 (15) | 0.87433 (18) | 0.0521 (5) | |
H6 | −0.0060 | 0.4007 | 0.8470 | 0.063* | |
C7 | −0.1555 (2) | 0.44937 (15) | 0.91292 (19) | 0.0552 (6) | |
H7 | −0.1330 | 0.5134 | 0.9122 | 0.066* | |
C8 | −0.1060 (2) | 0.08665 (17) | 0.7693 (2) | 0.0682 (7) | |
H8A | −0.1350 | 0.0579 | 0.8316 | 0.102* | |
H8B | −0.0531 | 0.0419 | 0.7385 | 0.102* | |
H8C | −0.1827 | 0.1048 | 0.7112 | 0.102* | |
C9 | 0.0661 (3) | 0.2458 (2) | 0.7055 (2) | 0.0755 (7) | |
H9A | −0.0049 | 0.2730 | 0.6484 | 0.113* | |
H9B | 0.1098 | 0.1969 | 0.6719 | 0.113* | |
H9C | 0.1297 | 0.2944 | 0.7367 | 0.113* | |
C10 | 0.1385 (2) | 0.15592 (15) | 0.94299 (17) | 0.0494 (5) | |
H10A | 0.1844 | 0.2123 | 0.9785 | 0.059* | |
H10B | 0.1014 | 0.1235 | 0.9996 | 0.059* | |
C11 | 0.2303 (2) | −0.00539 (14) | 0.91102 (16) | 0.0449 (5) | |
C12 | 0.34907 (19) | −0.03966 (14) | 0.87220 (16) | 0.0466 (5) | |
C13 | 0.3901 (2) | −0.13083 (17) | 0.85585 (19) | 0.0637 (6) | |
H13 | 0.3418 | −0.1836 | 0.8699 | 0.076* | |
C14 | 0.5067 (3) | −0.1404 (2) | 0.8175 (2) | 0.0792 (8) | |
H14 | 0.5375 | −0.2009 | 0.8055 | 0.095* | |
C15 | 0.5775 (3) | −0.0621 (2) | 0.7968 (2) | 0.0838 (9) | |
H15 | 0.6555 | −0.0710 | 0.7715 | 0.101* | |
C16 | 0.5365 (2) | 0.0289 (2) | 0.8124 (2) | 0.0713 (7) | |
H16 | 0.5847 | 0.0815 | 0.7977 | 0.086* | |
C17 | 0.4204 (2) | 0.03886 (15) | 0.85097 (17) | 0.0498 (5) | |
C18 | 0.34950 (19) | 0.12526 (16) | 0.87585 (17) | 0.0515 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Si1 | 0.0503 (4) | 0.0469 (3) | 0.0444 (3) | 0.0088 (2) | 0.0174 (3) | 0.0027 (2) |
O1 | 0.0752 (11) | 0.0601 (10) | 0.1004 (13) | 0.0179 (8) | 0.0350 (10) | −0.0101 (9) |
O2 | 0.0723 (11) | 0.0521 (9) | 0.0872 (12) | 0.0016 (8) | 0.0377 (9) | 0.0162 (8) |
O3 | 0.0658 (11) | 0.0540 (11) | 0.1174 (15) | −0.0131 (8) | 0.0284 (10) | 0.0015 (9) |
N1 | 0.0430 (9) | 0.0418 (9) | 0.0487 (9) | 0.0035 (7) | 0.0143 (7) | 0.0013 (7) |
C1 | 0.0881 (19) | 0.0571 (16) | 0.116 (2) | 0.0182 (14) | 0.0166 (17) | −0.0252 (15) |
C2 | 0.0478 (12) | 0.0503 (12) | 0.0567 (13) | 0.0113 (10) | 0.0112 (10) | −0.0017 (10) |
C3 | 0.0551 (13) | 0.0580 (14) | 0.0758 (16) | 0.0070 (11) | 0.0316 (12) | 0.0077 (11) |
C4 | 0.0581 (13) | 0.0403 (11) | 0.0665 (13) | 0.0034 (10) | 0.0253 (11) | 0.0063 (10) |
C5 | 0.0425 (11) | 0.0424 (11) | 0.0420 (10) | 0.0042 (8) | 0.0080 (8) | 0.0054 (8) |
C6 | 0.0450 (11) | 0.0482 (12) | 0.0646 (13) | −0.0004 (9) | 0.0156 (10) | 0.0031 (10) |
C7 | 0.0550 (13) | 0.0365 (11) | 0.0704 (14) | 0.0007 (9) | 0.0069 (11) | −0.0012 (10) |
C8 | 0.0661 (15) | 0.0660 (15) | 0.0713 (15) | 0.0044 (12) | 0.0136 (12) | −0.0197 (12) |
C9 | 0.0809 (17) | 0.0925 (19) | 0.0626 (15) | 0.0215 (15) | 0.0363 (13) | 0.0217 (14) |
C10 | 0.0564 (12) | 0.0448 (11) | 0.0501 (12) | 0.0086 (9) | 0.0187 (10) | −0.0041 (9) |
C11 | 0.0504 (12) | 0.0418 (11) | 0.0430 (11) | 0.0051 (9) | 0.0116 (9) | 0.0052 (9) |
C12 | 0.0459 (11) | 0.0519 (12) | 0.0389 (11) | 0.0082 (9) | 0.0033 (9) | −0.0011 (9) |
C13 | 0.0690 (15) | 0.0558 (14) | 0.0628 (14) | 0.0159 (12) | 0.0077 (12) | −0.0073 (11) |
C14 | 0.0711 (17) | 0.085 (2) | 0.0755 (17) | 0.0336 (15) | 0.0050 (14) | −0.0252 (15) |
C15 | 0.0519 (15) | 0.119 (3) | 0.0816 (18) | 0.0232 (17) | 0.0187 (13) | −0.0206 (18) |
C16 | 0.0421 (12) | 0.095 (2) | 0.0787 (17) | 0.0064 (12) | 0.0175 (11) | −0.0080 (14) |
C17 | 0.0388 (11) | 0.0629 (14) | 0.0456 (11) | 0.0041 (9) | 0.0053 (9) | −0.0016 (10) |
C18 | 0.0440 (11) | 0.0517 (13) | 0.0569 (13) | −0.0012 (10) | 0.0080 (9) | 0.0019 (10) |
Si1—C9 | 1.856 (2) | C6—H6 | 0.9300 |
Si1—C8 | 1.859 (2) | C7—H7 | 0.9300 |
Si1—C5 | 1.8609 (19) | C8—H8A | 0.9600 |
Si1—C10 | 1.897 (2) | C8—H8B | 0.9600 |
O1—C2 | 1.372 (2) | C8—H8C | 0.9600 |
O1—C1 | 1.410 (3) | C9—H9A | 0.9600 |
O2—C11 | 1.205 (2) | C9—H9B | 0.9600 |
O3—C18 | 1.212 (2) | C9—H9C | 0.9600 |
N1—C11 | 1.390 (3) | C10—H10A | 0.9700 |
N1—C18 | 1.390 (2) | C10—H10B | 0.9700 |
N1—C10 | 1.462 (2) | C11—C12 | 1.485 (3) |
C1—H1A | 0.9600 | C12—C13 | 1.378 (3) |
C1—H1B | 0.9600 | C12—C17 | 1.381 (3) |
C1—H1C | 0.9600 | C13—C14 | 1.386 (3) |
C2—C7 | 1.372 (3) | C13—H13 | 0.9300 |
C2—C3 | 1.378 (3) | C14—C15 | 1.374 (4) |
C3—C4 | 1.369 (3) | C14—H14 | 0.9300 |
C3—H3 | 0.9300 | C15—C16 | 1.373 (4) |
C4—C5 | 1.400 (3) | C15—H15 | 0.9300 |
C4—H4 | 0.9300 | C16—C17 | 1.383 (3) |
C5—C6 | 1.386 (3) | C16—H16 | 0.9300 |
C6—C7 | 1.390 (3) | C17—C18 | 1.482 (3) |
C9—Si1—C8 | 110.81 (13) | H8A—C8—H8C | 109.5 |
C9—Si1—C5 | 109.82 (10) | H8B—C8—H8C | 109.5 |
C8—Si1—C5 | 110.42 (10) | Si1—C9—H9A | 109.5 |
C9—Si1—C10 | 109.38 (11) | Si1—C9—H9B | 109.5 |
C8—Si1—C10 | 107.86 (10) | H9A—C9—H9B | 109.5 |
C5—Si1—C10 | 108.48 (8) | Si1—C9—H9C | 109.5 |
C2—O1—C1 | 118.2 (2) | H9A—C9—H9C | 109.5 |
C11—N1—C18 | 111.69 (16) | H9B—C9—H9C | 109.5 |
C11—N1—C10 | 124.13 (16) | N1—C10—Si1 | 113.82 (13) |
C18—N1—C10 | 124.10 (17) | N1—C10—H10A | 108.8 |
O1—C1—H1A | 109.5 | Si1—C10—H10A | 108.8 |
O1—C1—H1B | 109.5 | N1—C10—H10B | 108.8 |
H1A—C1—H1B | 109.5 | Si1—C10—H10B | 108.8 |
O1—C1—H1C | 109.5 | H10A—C10—H10B | 107.7 |
H1A—C1—H1C | 109.5 | O2—C11—N1 | 124.82 (18) |
H1B—C1—H1C | 109.5 | O2—C11—C12 | 129.12 (19) |
O1—C2—C7 | 125.3 (2) | N1—C11—C12 | 106.06 (17) |
O1—C2—C3 | 115.12 (19) | C13—C12—C17 | 121.6 (2) |
C7—C2—C3 | 119.63 (19) | C13—C12—C11 | 130.4 (2) |
C4—C3—C2 | 120.2 (2) | C17—C12—C11 | 108.00 (17) |
C4—C3—H3 | 119.9 | C12—C13—C14 | 117.0 (2) |
C2—C3—H3 | 119.9 | C12—C13—H13 | 121.5 |
C3—C4—C5 | 122.63 (19) | C14—C13—H13 | 121.5 |
C3—C4—H4 | 118.7 | C15—C14—C13 | 121.1 (2) |
C5—C4—H4 | 118.7 | C15—C14—H14 | 119.4 |
C6—C5—C4 | 115.11 (18) | C13—C14—H14 | 119.4 |
C6—C5—Si1 | 122.64 (15) | C16—C15—C14 | 122.0 (2) |
C4—C5—Si1 | 122.24 (15) | C16—C15—H15 | 119.0 |
C5—C6—C7 | 123.3 (2) | C14—C15—H15 | 119.0 |
C5—C6—H6 | 118.3 | C15—C16—C17 | 117.1 (3) |
C7—C6—H6 | 118.3 | C15—C16—H16 | 121.4 |
C2—C7—C6 | 119.06 (19) | C17—C16—H16 | 121.4 |
C2—C7—H7 | 120.5 | C12—C17—C16 | 121.1 (2) |
C6—C7—H7 | 120.5 | C12—C17—C18 | 108.11 (18) |
Si1—C8—H8A | 109.5 | C16—C17—C18 | 130.8 (2) |
Si1—C8—H8B | 109.5 | O3—C18—N1 | 124.7 (2) |
H8A—C8—H8B | 109.5 | O3—C18—C17 | 129.2 (2) |
Si1—C8—H8C | 109.5 | N1—C18—C17 | 106.09 (18) |
C1—O1—C2—C7 | 2.1 (3) | C18—N1—C11—C12 | −2.0 (2) |
C1—O1—C2—C3 | −177.5 (2) | C10—N1—C11—C12 | −178.81 (15) |
O1—C2—C3—C4 | −179.3 (2) | O2—C11—C12—C13 | 1.9 (4) |
C7—C2—C3—C4 | 1.1 (3) | N1—C11—C12—C13 | −178.2 (2) |
C2—C3—C4—C5 | −1.6 (3) | O2—C11—C12—C17 | −178.8 (2) |
C3—C4—C5—C6 | 0.8 (3) | N1—C11—C12—C17 | 1.1 (2) |
C3—C4—C5—Si1 | −178.04 (17) | C17—C12—C13—C14 | 0.2 (3) |
C9—Si1—C5—C6 | −30.5 (2) | C11—C12—C13—C14 | 179.45 (19) |
C8—Si1—C5—C6 | −153.00 (17) | C12—C13—C14—C15 | 0.0 (4) |
C10—Si1—C5—C6 | 88.99 (18) | C13—C14—C15—C16 | −0.3 (4) |
C9—Si1—C5—C4 | 148.23 (18) | C14—C15—C16—C17 | 0.4 (4) |
C8—Si1—C5—C4 | 25.73 (19) | C13—C12—C17—C16 | −0.1 (3) |
C10—Si1—C5—C4 | −92.27 (18) | C11—C12—C17—C16 | −179.46 (18) |
C4—C5—C6—C7 | 0.4 (3) | C13—C12—C17—C18 | 179.50 (18) |
Si1—C5—C6—C7 | 179.23 (16) | C11—C12—C17—C18 | 0.1 (2) |
O1—C2—C7—C6 | −179.48 (19) | C15—C16—C17—C12 | −0.3 (3) |
C3—C2—C7—C6 | 0.0 (3) | C15—C16—C17—C18 | −179.7 (2) |
C5—C6—C7—C2 | −0.8 (3) | C11—N1—C18—O3 | −177.6 (2) |
C11—N1—C10—Si1 | −93.1 (2) | C10—N1—C18—O3 | −0.8 (3) |
C18—N1—C10—Si1 | 90.5 (2) | C11—N1—C18—C17 | 2.1 (2) |
C9—Si1—C10—N1 | −53.22 (18) | C10—N1—C18—C17 | 178.88 (16) |
C8—Si1—C10—N1 | 67.39 (17) | C12—C17—C18—O3 | 178.3 (2) |
C5—Si1—C10—N1 | −172.99 (14) | C16—C17—C18—O3 | −2.2 (4) |
C18—N1—C11—O2 | 177.87 (19) | C12—C17—C18—N1 | −1.3 (2) |
C10—N1—C11—O2 | 1.1 (3) | C16—C17—C18—N1 | 178.2 (2) |
Experimental details
Crystal data | |
Chemical formula | C18H19NO3Si |
Mr | 325.43 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 300 |
a, b, c (Å) | 10.2713 (16), 14.061 (3), 12.069 (2) |
β (°) | 103.355 (6) |
V (Å3) | 1695.9 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.15 |
Crystal size (mm) | 0.50 × 0.40 × 0.23 |
Data collection | |
Diffractometer | Bruker SMART X2S diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.928, 0.966 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11394, 3197, 2338 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.610 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.131, 0.96 |
No. of reflections | 3197 |
No. of parameters | 211 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.26 |
Computer programs: GIS (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009) and FCF_filter (Guzei, 2007), SHELXTL (Sheldrick, 2008), modiCIFer (Guzei, 2007) and publCIF (Westrip, 2010).
Acknowledgements
We thank Dr N. J. Hill (UW-Madison) for acquiring the data and Professor R. West (UW-Madison) for his support. We gratefully acknowledge Bruker sponsorship of this publication and also acknowledge grants NIH 1 S10 RRO 8389–01 and NSF CHE-9629688 for providing NMR spectrometers, and grant NSF CHE-9304546 for providing the mass spectrometer.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Sila phthalimides are important intermediates in photochemistry (Lee et al., 1993, 1996; Yoon et al., 1997, 1992, 1991) and organic synthesis (Bikzhanova et al., 2007; Tsuge et al., 1985). We have used such compounds for the synthesis of selectively substituted sila amines (Bikzhanova et al., 2007) in order to identify biologically active organosilicon compounds. Organosilicon chemistry is a growing method of expanding chemical diversity (Franz, 2007; Franz et al., 2007; Tacke & Zilch, 1986; Showell & Mills, 2003), and it constitutes a powerful method of enhancing pharmacological properties in drug design (Bains & Tacke, 2003). In the course of our studies of silicon-containing anti-cancer compounds the title compound, (I), was synthesized and its structure is reported here.
The bond distances and angles of (I) are typical as confirmed by the Mogul structural check (Bruno et al., 2004), and agree well with those for 2-(3-(methyldiphenylsilyl)propyl)isoindoline-1,3-dione (Guzei, Spencer, Zakai & Lynch, 2010) and 2-(2-(trimethylsilyl)ethyl)isoindoline-1,3-dione (Guzei, Spencer & Zakai, 2010). Specifically, the average Si—C distances of 1.868 (19) Å for compound (I) are statistically similar to the 1.859 (6) Å average for six related compounds in the Cambridge Structural Database (Version 1.11, September 2009 release; Allen, 2002). The Si atom has a distorted tetrahedral geometry with angles ranging from 107.86 (10)° to 110.81 (13)°. Torsion angles C(11/18)-N1-C10-Si1 involving the silyl group are 90.5 (2) and -93.1 (2)°, similar to those in the related compound 6-(phthalimidomethyl(dimethyl)silyl)hexan-1-ol (Latxague & Leger, 2004). This is an indication that there is no interaction between the carbonyl oxygen and the silicon atom despite silicon's high affinity for oxygen (Murai et al., 1998).
The phthalate entity is planar within 0.0084 Å, and the methoxyphenyl group within 0.0044 Å. These groups are nearly parallel forming a 4.61 (8)° angle between their planes. There is one non-classical intermolecular interaction C4–H4···O2 with a C···O distance of 3.410 (3) Å and a C—H ···O angle of 134°. This weak interaction helps link the molecules of (I) into a three-dimensional framework.