organic compounds
3-Aminobenzoic acid–1,2-bis(4-pyridyl)ethane (1/1)
aDepartment of Biotechnology, Yuanpei University, HsinChu, Taiwan 30015, People's Republic of China, and bDepartment of Medical Laboratory Science Biotechnology, Yuanpei University, HsinChu, Taiwan 30015, People's Republic of China
*Correspondence e-mail: lush@mail.ypu.edu.tw
The 12H12N2·C7H7NO2, contains two 3-aminobenzoic acid molecules and two 1,2-bis(4-pyridyl)ethane molecules. In the two 1,2-bis(4-pyridyl)ethane molecules, the dihedral angles between the pyridyl rings are 2.99 (9) and 46.78 (8)°. In the crystal, the molecules associate through amine and carboxyl group N—H⋯O=C interactions between one of the 3-aminobenzoic acid molecules and one of the 1,2-bis(4-pyridyl)ethane molecules, generating R22(14) dimers, which are extended head-to-tail via amine and pyridine N—H⋯N hydrogen bonds. Intermolecular O—H⋯N, N—H⋯O, N—H⋯N and C—H⋯O hydrogen bonding are observed in the C—H⋯π and π–π stacking interactions [centroid–centroid distance = 3.9985 (10) Å] are also present.
of the title compound, CRelated literature
For applications of 3-aminobenzoic acid, see: Lynch & McClenaghan (2001); Smith (2005). For related structures, see: Smith et al. (1995); Lynch et al. (1998). For a similar dimeric R22(14) structure, see: Etter et al. (1990).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell CrysAlis RED (Oxford Diffraction, 2008); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
https://doi.org/10.1107/S1600536810014261/xu2742sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810014261/xu2742Isup2.hkl
The 3-aminobenzoic acid (171.0 mg, 1.0 mmol) and 1,2-bis(4-pyridyl)ethane (184 mg, 1.0 mmol) were dissolved in 20 ml 50% methanol-water, the solution was refluxed for 30 min. The filtered solution was transferred to a 25 ml tube after one week at room temperature, and colorless transparent crystals formed (yield 59.36%). Elemental analysis calcd(%) for C19H19N3O2 (Mr=321.37): C, 55.83; H, 5.96; N, 13.08; Found: C, 56.03; H, 5.92; N, 12.96.
Amino H atoms were located in a difference Fourier map and were refined isotropically. Water H atoms were located in a difference Fourier map and refined with the distances constraints of O—H = 0.84 Å, Uiso(H) = 1.5Ueq(O). Other H atoms were positioned geometrically with C—H = 0.95 (aromatic) and 0.99 Å (methylene), and refined using a riding model with Uiso(H) = 1.2Ueq(C).
The structures of a number of 1:1 adduct compounds of 3-aminobenzoic acid with Lewis bases have been reported. These include compounds with 2-amino-pyrimidine (Smith et al., 1995) and 2-aminobenzothiazole (Lynch et al., 1998). Not only 3-aminobenzoic acid is more effective for the promotion of hydrogen-bonding extensions, but also forms various weak noncovalent interactions, such as π-π stacking and C—H···π interactions.
Our research program aims to gain hydrogen-bonding networks involving 3-aminobenzoic acid with 1,2-bis(4-pyridyl)ethane, which can develop well defined noncovalent supramolecular architectures and form multiple hydrogen bonds containing components of complementary arrays of hydrogen-bonding sites. The resulting crystal X-Ray structure (Fig. 1) consists entirely of neutral 3-aminobenzoic acid molecules and neutral 1,2-bis(4-pyridyl)ethane units, with no proton transfer (Lynch & McClenaghan, 2001; Smith, 2005). The title compound comprises non-planar molecules, similar to other analogous compounds (Smith et al., 1995; Lynch et al., 1998) that associate 3-aminobenzoic acid via amine and carboxylic group N—H···O [N···O 3.061 (2) and 3.035 (2) Å] dimer R22(14) (Etter et al., 1990) and form linear hydrogen-bonded via amine and pyridine N—H··· N [N···N 3.048 (2) and 3.017 (2) Å].
The title compound's supramolecular structure can be readily analyzed in terms of carboxyl atom O1 and amino group N1 act as hydrogen-bond donors to pyridyl atoms N2 and N3. Similarly, N4, C22, C28, N1, C3, C38 act as hydrogen-bond donors to carboxyl atoms O2, O4, respectively (Table 1 and Fig. 2).
This layer is consolidated by C—H ···π interaction (C12—H12A···Cg5; full details and symmetry code are given in Table 1). Futhermore, π-π ring stacking interactions are between neighboring complexes in the structure. The distance between Cg1 (N2/C8—C12)···Cg4 (N6/C34—C38) is 3.9985 (10) Å and dihedral angle between two rings is 9.86 (9) °.
For applications of 3-aminobenzoic acid, see: Lynch & McClenaghan (2001); Smith (2005). For related structures, see: Smith et al. (1995); Lynch et al. (1998). For a similar dimeric R22(14) structure, see: Etter et al. (1990).
Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell
CrysAlis RED (Oxford Diffraction, 2008); data reduction: CrysAlis RED (Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. View of the title compound with the atom numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level. | |
Fig. 2. The molecular packing for the title compound. Hydrogen-bonding associations are shown as dotted lines. |
C12H12N2·C7H7NO2 | Z = 4 |
Mr = 321.37 | F(000) = 680 |
Triclinic, P1 | Dx = 1.305 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.0430 (3) Å | Cell parameters from 6302 reflections |
b = 13.0565 (5) Å | θ = 2.5–29.2° |
c = 14.6300 (5) Å | µ = 0.09 mm−1 |
α = 88.172 (3)° | T = 100 K |
β = 79.366 (3)° | Parallelepiped, colorless |
γ = 74.506 (3)° | 0.54 × 0.18 × 0.15 mm |
V = 1635.72 (10) Å3 |
Oxford Diffraction Gemini-S CCD diffractometer | 5971 independent reflections |
Radiation source: fine-focus sealed tube | 4125 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
ω scans | θmax = 25.5°, θmin = 2.5° |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | h = −10→10 |
Tmin = 0.997, Tmax = 1.000 | k = −13→15 |
12385 measured reflections | l = −17→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.99 | w = 1/[σ2(Fo2) + (0.0632P)2] where P = (Fo2 + 2Fc2)/3 |
5971 reflections | (Δ/σ)max = 0.002 |
455 parameters | Δρmax = 0.57 e Å−3 |
2 restraints | Δρmin = −0.35 e Å−3 |
C12H12N2·C7H7NO2 | γ = 74.506 (3)° |
Mr = 321.37 | V = 1635.72 (10) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.0430 (3) Å | Mo Kα radiation |
b = 13.0565 (5) Å | µ = 0.09 mm−1 |
c = 14.6300 (5) Å | T = 100 K |
α = 88.172 (3)° | 0.54 × 0.18 × 0.15 mm |
β = 79.366 (3)° |
Oxford Diffraction Gemini-S CCD diffractometer | 5971 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 4125 reflections with I > 2σ(I) |
Tmin = 0.997, Tmax = 1.000 | Rint = 0.020 |
12385 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 2 restraints |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.99 | Δρmax = 0.57 e Å−3 |
5971 reflections | Δρmin = −0.35 e Å−3 |
455 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.76671 (15) | 0.58027 (10) | 0.03742 (8) | 0.0334 (3) | |
O2 | 0.77042 (15) | 0.69496 (9) | −0.07886 (8) | 0.0328 (3) | |
O3 | 0.26995 (15) | 0.16295 (9) | 0.48714 (9) | 0.0323 (3) | |
O4 | 0.23015 (14) | 0.28364 (9) | 0.37667 (8) | 0.0312 (3) | |
N1 | 0.69956 (18) | 0.49939 (14) | −0.35303 (11) | 0.0306 (4) | |
N2 | 0.81019 (17) | 0.73452 (11) | 0.13170 (10) | 0.0281 (3) | |
N3 | 0.7482 (2) | 1.31954 (12) | 0.50754 (11) | 0.0374 (4) | |
N4 | 0.28039 (18) | 0.06579 (14) | 0.08726 (11) | 0.0305 (4) | |
N5 | 0.77629 (17) | 0.10653 (11) | 0.02344 (10) | 0.0299 (4) | |
N6 | 0.76549 (16) | 0.67214 (11) | 0.41027 (10) | 0.0261 (3) | |
C1 | 0.75649 (18) | 0.60925 (13) | −0.04865 (12) | 0.0230 (4) | |
C2 | 0.72593 (18) | 0.52804 (13) | −0.10732 (12) | 0.0225 (4) | |
C3 | 0.73369 (18) | 0.54740 (13) | −0.20172 (12) | 0.0226 (4) | |
H3C | 0.7591 | 0.6100 | −0.2264 | 0.027* | |
C4 | 0.70458 (18) | 0.47598 (13) | −0.26121 (12) | 0.0238 (4) | |
C5 | 0.67203 (19) | 0.38323 (13) | −0.22244 (13) | 0.0254 (4) | |
H5B | 0.6563 | 0.3319 | −0.2615 | 0.030* | |
C6 | 0.66242 (19) | 0.36513 (13) | −0.12816 (13) | 0.0277 (4) | |
H6B | 0.6380 | 0.3023 | −0.1033 | 0.033* | |
C7 | 0.68795 (19) | 0.43750 (13) | −0.06922 (13) | 0.0264 (4) | |
H7A | 0.6796 | 0.4253 | −0.0043 | 0.032* | |
C8 | 0.7001 (2) | 0.82631 (14) | 0.13950 (13) | 0.0314 (4) | |
H8A | 0.6139 | 0.8324 | 0.1092 | 0.038* | |
C9 | 0.7045 (2) | 0.91298 (15) | 0.18921 (14) | 0.0368 (5) | |
H9A | 0.6211 | 0.9760 | 0.1947 | 0.044* | |
C10 | 0.8319 (2) | 0.90730 (15) | 0.23106 (14) | 0.0384 (5) | |
C11 | 0.9444 (2) | 0.81133 (15) | 0.22388 (13) | 0.0353 (5) | |
H11A | 1.0322 | 0.8031 | 0.2532 | 0.042* | |
C12 | 0.9304 (2) | 0.72758 (14) | 0.17472 (13) | 0.0297 (4) | |
H12A | 1.0092 | 0.6623 | 0.1712 | 0.036* | |
C13 | 0.8492 (2) | 1.00327 (19) | 0.28015 (19) | 0.0631 (7) | |
H13A | 0.9396 | 0.9800 | 0.3122 | 0.076* | |
H13B | 0.8729 | 1.0551 | 0.2326 | 0.076* | |
C14 | 0.7126 (2) | 1.05708 (17) | 0.34813 (16) | 0.0475 (6) | |
H14A | 0.6866 | 1.0047 | 0.3945 | 0.057* | |
H14B | 0.6229 | 1.0826 | 0.3157 | 0.057* | |
C15 | 0.7326 (2) | 1.15073 (15) | 0.39924 (13) | 0.0335 (5) | |
C16 | 0.6186 (2) | 1.24545 (14) | 0.40946 (13) | 0.0326 (4) | |
H16A | 0.5313 | 1.2550 | 0.3795 | 0.039* | |
C17 | 0.6305 (2) | 1.32601 (15) | 0.46274 (14) | 0.0363 (5) | |
H17A | 0.5499 | 1.3906 | 0.4681 | 0.044* | |
C18 | 0.8615 (2) | 1.22878 (15) | 0.49533 (13) | 0.0341 (5) | |
H18A | 0.9484 | 1.2223 | 0.5251 | 0.041* | |
C19 | 0.8598 (2) | 1.14407 (15) | 0.44223 (13) | 0.0341 (5) | |
H19A | 0.9445 | 1.0818 | 0.4350 | 0.041* | |
C20 | 0.25604 (19) | 0.19120 (13) | 0.40181 (12) | 0.0242 (4) | |
C21 | 0.27294 (18) | 0.10109 (13) | 0.33654 (12) | 0.0228 (4) | |
C22 | 0.26585 (18) | 0.12404 (13) | 0.24435 (12) | 0.0232 (4) | |
H22A | 0.2535 | 0.1952 | 0.2242 | 0.028* | |
C23 | 0.27665 (18) | 0.04385 (13) | 0.18016 (12) | 0.0235 (4) | |
C24 | 0.28837 (19) | −0.05921 (13) | 0.21297 (13) | 0.0270 (4) | |
H24A | 0.2917 | −0.1145 | 0.1714 | 0.032* | |
C25 | 0.2952 (2) | −0.08156 (14) | 0.30540 (13) | 0.0301 (4) | |
H25A | 0.3038 | −0.1522 | 0.3263 | 0.036* | |
C26 | 0.28984 (19) | −0.00229 (13) | 0.36817 (13) | 0.0268 (4) | |
H26A | 0.2975 | −0.0184 | 0.4312 | 0.032* | |
C27 | 0.8959 (2) | 0.14566 (14) | 0.03144 (13) | 0.0313 (4) | |
H27A | 0.9958 | 0.1120 | −0.0034 | 0.038* | |
C28 | 0.8827 (2) | 0.23233 (13) | 0.08754 (12) | 0.0280 (4) | |
H28A | 0.9720 | 0.2566 | 0.0904 | 0.034* | |
C29 | 0.73906 (19) | 0.28338 (13) | 0.13937 (12) | 0.0227 (4) | |
C30 | 0.6147 (2) | 0.24242 (13) | 0.13143 (12) | 0.0264 (4) | |
H30A | 0.5137 | 0.2739 | 0.1661 | 0.032* | |
C31 | 0.6377 (2) | 0.15652 (14) | 0.07347 (13) | 0.0284 (4) | |
H31A | 0.5501 | 0.1312 | 0.0687 | 0.034* | |
C32 | 0.71112 (19) | 0.38225 (13) | 0.19731 (12) | 0.0243 (4) | |
H32A | 0.6204 | 0.3855 | 0.2477 | 0.029* | |
H32B | 0.6829 | 0.4448 | 0.1577 | 0.029* | |
C33 | 0.84736 (19) | 0.39114 (13) | 0.24075 (13) | 0.0282 (4) | |
H33A | 0.8779 | 0.3278 | 0.2790 | 0.034* | |
H33B | 0.9373 | 0.3905 | 0.1904 | 0.034* | |
C34 | 0.81443 (18) | 0.48966 (13) | 0.30095 (12) | 0.0230 (4) | |
C35 | 0.69101 (19) | 0.57861 (13) | 0.29678 (12) | 0.0280 (4) | |
H35A | 0.6204 | 0.5786 | 0.2560 | 0.034* | |
C36 | 0.6707 (2) | 0.66686 (13) | 0.35164 (12) | 0.0277 (4) | |
H36A | 0.5854 | 0.7267 | 0.3476 | 0.033* | |
C37 | 0.8843 (2) | 0.58632 (13) | 0.41499 (12) | 0.0287 (4) | |
H37A | 0.9527 | 0.5884 | 0.4565 | 0.034* | |
C38 | 0.9119 (2) | 0.49513 (13) | 0.36243 (12) | 0.0265 (4) | |
H38A | 0.9975 | 0.4361 | 0.3683 | 0.032* | |
H1C | 0.785 (2) | 0.6290 (10) | 0.0663 (12) | 0.040* | |
H3A | 0.268 (2) | 0.2174 (9) | 0.5172 (12) | 0.040* | |
H1A | 0.731 (2) | 0.5562 (16) | −0.3754 (13) | 0.034 (5)* | |
H1B | 0.714 (2) | 0.4461 (15) | −0.3921 (14) | 0.036 (5)* | |
H4A | 0.252 (2) | 0.1339 (18) | 0.0720 (15) | 0.051 (7)* | |
H4B | 0.256 (2) | 0.0199 (16) | 0.0528 (14) | 0.044 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0541 (8) | 0.0295 (7) | 0.0231 (8) | −0.0198 (6) | −0.0098 (6) | −0.0049 (6) |
O2 | 0.0516 (8) | 0.0259 (7) | 0.0270 (7) | −0.0185 (6) | −0.0100 (6) | −0.0021 (6) |
O3 | 0.0530 (8) | 0.0223 (7) | 0.0236 (8) | −0.0093 (6) | −0.0118 (6) | −0.0049 (6) |
O4 | 0.0489 (8) | 0.0192 (7) | 0.0268 (7) | −0.0078 (6) | −0.0110 (6) | −0.0042 (5) |
N1 | 0.0430 (9) | 0.0253 (9) | 0.0265 (10) | −0.0107 (8) | −0.0106 (7) | −0.0061 (8) |
N2 | 0.0338 (8) | 0.0304 (9) | 0.0207 (8) | −0.0117 (7) | −0.0011 (7) | −0.0057 (7) |
N3 | 0.0517 (10) | 0.0340 (10) | 0.0277 (9) | −0.0169 (8) | −0.0006 (8) | −0.0077 (7) |
N4 | 0.0430 (10) | 0.0251 (9) | 0.0262 (10) | −0.0120 (8) | −0.0078 (7) | −0.0087 (8) |
N5 | 0.0357 (9) | 0.0276 (8) | 0.0292 (9) | −0.0113 (7) | −0.0076 (7) | −0.0067 (7) |
N6 | 0.0342 (8) | 0.0240 (8) | 0.0203 (8) | −0.0078 (6) | −0.0046 (7) | −0.0050 (6) |
C1 | 0.0234 (8) | 0.0217 (9) | 0.0228 (10) | −0.0052 (7) | −0.0018 (7) | −0.0050 (8) |
C2 | 0.0211 (8) | 0.0202 (9) | 0.0251 (10) | −0.0032 (7) | −0.0035 (7) | −0.0061 (7) |
C3 | 0.0231 (8) | 0.0177 (9) | 0.0267 (10) | −0.0047 (7) | −0.0039 (7) | −0.0047 (7) |
C4 | 0.0199 (8) | 0.0225 (9) | 0.0273 (11) | −0.0005 (7) | −0.0064 (7) | −0.0072 (8) |
C5 | 0.0243 (9) | 0.0178 (9) | 0.0350 (12) | −0.0030 (7) | −0.0102 (8) | −0.0093 (8) |
C6 | 0.0287 (9) | 0.0188 (9) | 0.0369 (12) | −0.0075 (7) | −0.0069 (8) | −0.0024 (8) |
C7 | 0.0296 (9) | 0.0234 (10) | 0.0262 (10) | −0.0067 (7) | −0.0047 (8) | −0.0034 (8) |
C8 | 0.0345 (10) | 0.0334 (11) | 0.0296 (11) | −0.0109 (8) | −0.0112 (8) | −0.0020 (9) |
C9 | 0.0321 (10) | 0.0301 (11) | 0.0476 (13) | −0.0047 (8) | −0.0093 (9) | −0.0105 (9) |
C10 | 0.0310 (10) | 0.0368 (11) | 0.0473 (13) | −0.0073 (8) | −0.0060 (9) | −0.0197 (10) |
C11 | 0.0265 (9) | 0.0409 (12) | 0.0397 (12) | −0.0073 (8) | −0.0089 (9) | −0.0146 (9) |
C12 | 0.0265 (9) | 0.0288 (10) | 0.0325 (11) | −0.0063 (8) | −0.0015 (8) | −0.0097 (8) |
C13 | 0.0382 (12) | 0.0631 (16) | 0.087 (2) | −0.0124 (11) | −0.0032 (12) | −0.0452 (14) |
C14 | 0.0461 (12) | 0.0530 (14) | 0.0454 (14) | −0.0181 (11) | −0.0027 (11) | −0.0187 (11) |
C15 | 0.0413 (11) | 0.0320 (11) | 0.0293 (11) | −0.0122 (9) | −0.0067 (9) | −0.0071 (9) |
C16 | 0.0329 (10) | 0.0339 (11) | 0.0343 (12) | −0.0131 (8) | −0.0084 (8) | 0.0014 (9) |
C17 | 0.0359 (10) | 0.0294 (11) | 0.0380 (12) | −0.0060 (8) | 0.0044 (9) | −0.0039 (9) |
C18 | 0.0396 (11) | 0.0377 (11) | 0.0309 (11) | −0.0179 (9) | −0.0094 (9) | −0.0028 (9) |
C19 | 0.0353 (10) | 0.0295 (10) | 0.0356 (12) | −0.0058 (8) | −0.0044 (9) | −0.0064 (9) |
C20 | 0.0270 (9) | 0.0228 (10) | 0.0233 (11) | −0.0065 (7) | −0.0057 (8) | −0.0042 (8) |
C21 | 0.0221 (8) | 0.0208 (9) | 0.0260 (10) | −0.0063 (7) | −0.0039 (7) | −0.0051 (7) |
C22 | 0.0228 (8) | 0.0205 (9) | 0.0272 (10) | −0.0070 (7) | −0.0040 (7) | −0.0056 (7) |
C23 | 0.0204 (8) | 0.0242 (10) | 0.0263 (11) | −0.0069 (7) | −0.0029 (7) | −0.0079 (8) |
C24 | 0.0271 (9) | 0.0225 (9) | 0.0316 (11) | −0.0065 (7) | −0.0039 (8) | −0.0116 (8) |
C25 | 0.0324 (10) | 0.0196 (9) | 0.0381 (12) | −0.0068 (8) | −0.0055 (8) | −0.0037 (8) |
C26 | 0.0313 (9) | 0.0223 (9) | 0.0267 (11) | −0.0060 (7) | −0.0061 (8) | −0.0023 (8) |
C27 | 0.0312 (10) | 0.0315 (10) | 0.0312 (11) | −0.0091 (8) | −0.0024 (8) | −0.0111 (8) |
C28 | 0.0272 (9) | 0.0282 (10) | 0.0316 (11) | −0.0114 (7) | −0.0052 (8) | −0.0075 (8) |
C29 | 0.0295 (9) | 0.0205 (9) | 0.0199 (10) | −0.0071 (7) | −0.0082 (7) | 0.0002 (7) |
C30 | 0.0263 (9) | 0.0247 (9) | 0.0286 (11) | −0.0068 (7) | −0.0056 (8) | −0.0025 (8) |
C31 | 0.0293 (9) | 0.0279 (10) | 0.0326 (11) | −0.0114 (8) | −0.0115 (8) | −0.0018 (8) |
C32 | 0.0284 (9) | 0.0216 (9) | 0.0229 (10) | −0.0066 (7) | −0.0034 (7) | −0.0050 (7) |
C33 | 0.0260 (9) | 0.0270 (10) | 0.0314 (11) | −0.0070 (7) | −0.0027 (8) | −0.0125 (8) |
C34 | 0.0237 (9) | 0.0251 (9) | 0.0208 (10) | −0.0098 (7) | 0.0004 (7) | −0.0050 (7) |
C35 | 0.0257 (9) | 0.0300 (10) | 0.0296 (11) | −0.0063 (7) | −0.0080 (8) | −0.0088 (8) |
C36 | 0.0298 (9) | 0.0257 (10) | 0.0256 (10) | −0.0029 (7) | −0.0055 (8) | −0.0061 (8) |
C37 | 0.0374 (10) | 0.0281 (10) | 0.0218 (10) | −0.0069 (8) | −0.0101 (8) | −0.0050 (8) |
C38 | 0.0302 (9) | 0.0242 (9) | 0.0242 (10) | −0.0048 (7) | −0.0058 (8) | −0.0028 (8) |
O1—C1 | 1.316 (2) | C14—H14A | 0.9900 |
O1—H1C | 0.843 (16) | C14—H14B | 0.9900 |
O2—C1 | 1.2192 (19) | C15—C16 | 1.374 (3) |
O3—C20 | 1.309 (2) | C15—C19 | 1.391 (2) |
O3—H3A | 0.842 (14) | C16—C17 | 1.367 (2) |
O4—C20 | 1.2245 (19) | C16—H16A | 0.9500 |
N1—C4 | 1.374 (2) | C17—H17A | 0.9500 |
N1—H1A | 0.89 (2) | C18—C19 | 1.377 (2) |
N1—H1B | 0.881 (19) | C18—H18A | 0.9500 |
N2—C8 | 1.330 (2) | C19—H19A | 0.9500 |
N2—C12 | 1.335 (2) | C20—C21 | 1.497 (2) |
N3—C17 | 1.332 (2) | C21—C22 | 1.382 (2) |
N3—C18 | 1.335 (2) | C21—C26 | 1.391 (2) |
N4—C23 | 1.376 (2) | C22—C23 | 1.401 (2) |
N4—H4A | 0.89 (2) | C22—H22A | 0.9500 |
N4—H4B | 0.889 (19) | C23—C24 | 1.398 (2) |
N5—C31 | 1.337 (2) | C24—C25 | 1.383 (3) |
N5—C27 | 1.338 (2) | C24—H24A | 0.9500 |
N6—C36 | 1.335 (2) | C25—C26 | 1.391 (2) |
N6—C37 | 1.339 (2) | C25—H25A | 0.9500 |
C1—C2 | 1.497 (2) | C26—H26A | 0.9500 |
C2—C3 | 1.388 (2) | C27—C28 | 1.386 (2) |
C2—C7 | 1.389 (2) | C27—H27A | 0.9500 |
C3—C4 | 1.401 (2) | C28—C29 | 1.383 (2) |
C3—H3C | 0.9500 | C28—H28A | 0.9500 |
C4—C5 | 1.400 (2) | C29—C30 | 1.392 (2) |
C5—C6 | 1.383 (3) | C29—C32 | 1.505 (2) |
C5—H5B | 0.9500 | C30—C31 | 1.375 (2) |
C6—C7 | 1.390 (2) | C30—H30A | 0.9500 |
C6—H6B | 0.9500 | C31—H31A | 0.9500 |
C7—H7A | 0.9500 | C32—C33 | 1.518 (2) |
C8—C9 | 1.378 (2) | C32—H32A | 0.9900 |
C8—H8A | 0.9500 | C32—H32B | 0.9900 |
C9—C10 | 1.385 (2) | C33—C34 | 1.513 (2) |
C9—H9A | 0.9500 | C33—H33A | 0.9900 |
C10—C11 | 1.380 (3) | C33—H33B | 0.9900 |
C10—C13 | 1.521 (3) | C34—C38 | 1.386 (2) |
C11—C12 | 1.374 (2) | C34—C35 | 1.388 (2) |
C11—H11A | 0.9500 | C35—C36 | 1.377 (2) |
C12—H12A | 0.9500 | C35—H35A | 0.9500 |
C13—C14 | 1.462 (3) | C36—H36A | 0.9500 |
C13—H13A | 0.9900 | C37—C38 | 1.378 (2) |
C13—H13B | 0.9900 | C37—H37A | 0.9500 |
C14—C15 | 1.521 (3) | C38—H38A | 0.9500 |
C1—O1—H1C | 109.6 (14) | N3—C18—C19 | 123.90 (17) |
C20—O3—H3A | 107.9 (14) | N3—C18—H18A | 118.1 |
C4—N1—H1A | 117.4 (12) | C19—C18—H18A | 118.1 |
C4—N1—H1B | 117.8 (12) | C18—C19—C15 | 119.26 (17) |
H1A—N1—H1B | 117.4 (18) | C18—C19—H19A | 120.4 |
C8—N2—C12 | 117.35 (14) | C15—C19—H19A | 120.4 |
C17—N3—C18 | 115.91 (15) | O4—C20—O3 | 123.30 (15) |
C23—N4—H4A | 117.2 (14) | O4—C20—C21 | 122.09 (15) |
C23—N4—H4B | 117.1 (13) | O3—C20—C21 | 114.61 (15) |
H4A—N4—H4B | 116.4 (19) | C22—C21—C26 | 120.79 (15) |
C31—N5—C27 | 116.04 (14) | C22—C21—C20 | 118.06 (15) |
C36—N6—C37 | 117.17 (14) | C26—C21—C20 | 121.11 (15) |
O2—C1—O1 | 123.33 (15) | C21—C22—C23 | 120.95 (16) |
O2—C1—C2 | 122.23 (16) | C21—C22—H22A | 119.5 |
O1—C1—C2 | 114.44 (15) | C23—C22—H22A | 119.5 |
C3—C2—C7 | 120.77 (15) | N4—C23—C24 | 121.30 (15) |
C3—C2—C1 | 117.48 (15) | N4—C23—C22 | 120.70 (16) |
C7—C2—C1 | 121.74 (16) | C24—C23—C22 | 117.97 (16) |
C2—C3—C4 | 121.01 (16) | C25—C24—C23 | 120.70 (15) |
C2—C3—H3C | 119.5 | C25—C24—H24A | 119.7 |
C4—C3—H3C | 119.5 | C23—C24—H24A | 119.7 |
N1—C4—C5 | 121.39 (15) | C24—C25—C26 | 121.05 (17) |
N1—C4—C3 | 120.93 (16) | C24—C25—H25A | 119.5 |
C5—C4—C3 | 117.57 (16) | C26—C25—H25A | 119.5 |
C6—C5—C4 | 121.08 (15) | C25—C26—C21 | 118.46 (16) |
C6—C5—H5B | 119.5 | C25—C26—H26A | 120.8 |
C4—C5—H5B | 119.5 | C21—C26—H26A | 120.8 |
C5—C6—C7 | 120.99 (17) | N5—C27—C28 | 123.95 (17) |
C5—C6—H6B | 119.5 | N5—C27—H27A | 118.0 |
C7—C6—H6B | 119.5 | C28—C27—H27A | 118.0 |
C2—C7—C6 | 118.52 (17) | C29—C28—C27 | 119.67 (15) |
C2—C7—H7A | 120.7 | C29—C28—H28A | 120.2 |
C6—C7—H7A | 120.7 | C27—C28—H28A | 120.2 |
N2—C8—C9 | 123.44 (16) | C28—C29—C30 | 116.43 (15) |
N2—C8—H8A | 118.3 | C28—C29—C32 | 123.50 (14) |
C9—C8—H8A | 118.3 | C30—C29—C32 | 119.95 (15) |
C8—C9—C10 | 119.32 (17) | C31—C30—C29 | 120.15 (16) |
C8—C9—H9A | 120.3 | C31—C30—H30A | 119.9 |
C10—C9—H9A | 120.3 | C29—C30—H30A | 119.9 |
C11—C10—C9 | 116.86 (16) | N5—C31—C30 | 123.75 (15) |
C11—C10—C13 | 121.56 (17) | N5—C31—H31A | 118.1 |
C9—C10—C13 | 121.56 (18) | C30—C31—H31A | 118.1 |
C12—C11—C10 | 120.48 (16) | C29—C32—C33 | 115.58 (14) |
C12—C11—H11A | 119.8 | C29—C32—H32A | 108.4 |
C10—C11—H11A | 119.8 | C33—C32—H32A | 108.4 |
N2—C12—C11 | 122.48 (16) | C29—C32—H32B | 108.4 |
N2—C12—H12A | 118.8 | C33—C32—H32B | 108.4 |
C11—C12—H12A | 118.8 | H32A—C32—H32B | 107.4 |
C14—C13—C10 | 114.94 (18) | C34—C33—C32 | 114.45 (14) |
C14—C13—H13A | 108.5 | C34—C33—H33A | 108.6 |
C10—C13—H13A | 108.5 | C32—C33—H33A | 108.6 |
C14—C13—H13B | 108.5 | C34—C33—H33B | 108.6 |
C10—C13—H13B | 108.5 | C32—C33—H33B | 108.6 |
H13A—C13—H13B | 107.5 | H33A—C33—H33B | 107.6 |
C13—C14—C15 | 114.66 (17) | C38—C34—C35 | 116.73 (15) |
C13—C14—H14A | 108.6 | C38—C34—C33 | 120.09 (15) |
C15—C14—H14A | 108.6 | C35—C34—C33 | 123.16 (14) |
C13—C14—H14B | 108.6 | C36—C35—C34 | 120.06 (15) |
C15—C14—H14B | 108.6 | C36—C35—H35A | 120.0 |
H14A—C14—H14B | 107.6 | C34—C35—H35A | 120.0 |
C16—C15—C19 | 116.69 (16) | N6—C36—C35 | 123.04 (16) |
C16—C15—C14 | 120.43 (17) | N6—C36—H36A | 118.5 |
C19—C15—C14 | 122.78 (17) | C35—C36—H36A | 118.5 |
C17—C16—C15 | 120.10 (17) | N6—C37—C38 | 123.11 (15) |
C17—C16—H16A | 119.9 | N6—C37—H37A | 118.4 |
C15—C16—H16A | 119.9 | C38—C37—H37A | 118.4 |
N3—C17—C16 | 124.04 (18) | C37—C38—C34 | 119.88 (16) |
N3—C17—H17A | 118.0 | C37—C38—H38A | 120.1 |
C16—C17—H17A | 118.0 | C34—C38—H38A | 120.1 |
Cg5 is the centroid of the C2–C7 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1C···N2 | 0.84 (2) | 1.79 (2) | 2.6294 (19) | 176 (2) |
O3—H3A···N6i | 0.84 (1) | 1.75 (1) | 2.5790 (19) | 171 (2) |
N1—H1A···O4ii | 0.89 (2) | 2.21 (2) | 3.061 (2) | 158.6 (17) |
N1—H1B···N3iii | 0.882 (19) | 2.17 (2) | 3.048 (2) | 177.8 (19) |
N4—H4A···O2ii | 0.89 (2) | 2.19 (2) | 3.035 (2) | 157.6 (18) |
N4—H4B···N5iv | 0.89 (2) | 2.13 (2) | 3.017 (2) | 171.9 (17) |
C3—H3C···O4ii | 0.95 | 2.56 | 3.353 (2) | 141 |
C22—H22A···O2ii | 0.95 | 2.54 | 3.327 (2) | 141 |
C28—H28A···O2v | 0.95 | 2.55 | 3.492 (2) | 172 |
C38—H38A···O4vi | 0.95 | 2.50 | 3.448 (2) | 177 |
C12—H12A···Cg5v | 0.95 | 2.67 | 3.5510 (18) | 154 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z; (iii) x, y−1, z−1; (iv) −x+1, −y, −z; (v) −x+2, −y+1, −z; (vi) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C12H12N2·C7H7NO2 |
Mr | 321.37 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 9.0430 (3), 13.0565 (5), 14.6300 (5) |
α, β, γ (°) | 88.172 (3), 79.366 (3), 74.506 (3) |
V (Å3) | 1635.72 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.54 × 0.18 × 0.15 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini-S CCD |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.997, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12385, 5971, 4125 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.108, 0.99 |
No. of reflections | 5971 |
No. of parameters | 455 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.57, −0.35 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2008), CrysAlis RED (Oxford Diffraction, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
Cg5 is the centroid of the C2–C7 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1C···N2 | 0.843 (16) | 1.788 (15) | 2.6294 (19) | 176.1 (17) |
O3—H3A···N6i | 0.842 (14) | 1.745 (14) | 2.5790 (19) | 170.5 (18) |
N1—H1A···O4ii | 0.89 (2) | 2.21 (2) | 3.061 (2) | 158.6 (17) |
N1—H1B···N3iii | 0.882 (19) | 2.17 (2) | 3.048 (2) | 177.8 (19) |
N4—H4A···O2ii | 0.89 (2) | 2.19 (2) | 3.035 (2) | 157.6 (18) |
N4—H4B···N5iv | 0.89 (2) | 2.13 (2) | 3.017 (2) | 171.9 (17) |
C3—H3C···O4ii | 0.95 | 2.56 | 3.353 (2) | 141 |
C22—H22A···O2ii | 0.95 | 2.54 | 3.327 (2) | 141 |
C28—H28A···O2v | 0.95 | 2.55 | 3.492 (2) | 172 |
C38—H38A···O4vi | 0.95 | 2.50 | 3.448 (2) | 177 |
C12—H12A···Cg5v | 0.95 | 2.67 | 3.5510 (18) | 154 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z; (iii) x, y−1, z−1; (iv) −x+1, −y, −z; (v) −x+2, −y+1, −z; (vi) x+1, y, z. |
Acknowledgements
This work was supported financially by Yuanpei University.
References
Etter, M. C., MacDonald, J. C. & Bernstein, J. (1990). Acta Cryst. B46, 256–262. CrossRef CAS Web of Science IUCr Journals Google Scholar
Lynch, D. E. & McClenaghan, I. (2001). Acta Cryst. C57, 830–832. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Lynch, D. E., Smith, G., Byriel, K. A. & Kennard, C. H. L. (1998). Aust. J. Chem. 51, 587–592. Web of Science CSD CrossRef CAS Google Scholar
Oxford Diffraction (2008). CrysAlis CCD and CrysAlis RED. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Oxford Diffraction (2009). CrysAlis PRO. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Smith, G. (2005). Acta Cryst. E61, o3398–o3400. Web of Science CSD CrossRef IUCr Journals Google Scholar
Smith, G., Gentner, J. M., Lynch, D. E., Byriel, K. A. & Kennard, C. H. L. (1995). Aust. J. Chem. 48, 1151–1166. CSD CrossRef CAS Web of Science Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The structures of a number of 1:1 adduct compounds of 3-aminobenzoic acid with Lewis bases have been reported. These include compounds with 2-amino-pyrimidine (Smith et al., 1995) and 2-aminobenzothiazole (Lynch et al., 1998). Not only 3-aminobenzoic acid is more effective for the promotion of hydrogen-bonding extensions, but also forms various weak noncovalent interactions, such as π-π stacking and C—H···π interactions.
Our research program aims to gain hydrogen-bonding networks involving 3-aminobenzoic acid with 1,2-bis(4-pyridyl)ethane, which can develop well defined noncovalent supramolecular architectures and form multiple hydrogen bonds containing components of complementary arrays of hydrogen-bonding sites. The resulting crystal X-Ray structure (Fig. 1) consists entirely of neutral 3-aminobenzoic acid molecules and neutral 1,2-bis(4-pyridyl)ethane units, with no proton transfer (Lynch & McClenaghan, 2001; Smith, 2005). The title compound comprises non-planar molecules, similar to other analogous compounds (Smith et al., 1995; Lynch et al., 1998) that associate 3-aminobenzoic acid via amine and carboxylic group N—H···O [N···O 3.061 (2) and 3.035 (2) Å] dimer R22(14) (Etter et al., 1990) and form linear hydrogen-bonded via amine and pyridine N—H··· N [N···N 3.048 (2) and 3.017 (2) Å].
The title compound's supramolecular structure can be readily analyzed in terms of carboxyl atom O1 and amino group N1 act as hydrogen-bond donors to pyridyl atoms N2 and N3. Similarly, N4, C22, C28, N1, C3, C38 act as hydrogen-bond donors to carboxyl atoms O2, O4, respectively (Table 1 and Fig. 2).
This layer is consolidated by C—H ···π interaction (C12—H12A···Cg5; full details and symmetry code are given in Table 1). Futhermore, π-π ring stacking interactions are between neighboring complexes in the structure. The distance between Cg1 (N2/C8—C12)···Cg4 (N6/C34—C38) is 3.9985 (10) Å and dihedral angle between two rings is 9.86 (9) °.