organic compounds
Ethyl 3-amino-4-[(2-hydroxyethyl)amino]benzoate
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bKuliyyah of Science, International Islamic University Malaysia, Jalan Sultan Ahmad Shah, Bandar Indera Mahkota, 25200 Kuantan, Pahang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the 11H16N2O3, molecules are linked by one O—H⋯N and two N—H⋯O intermolecular hydrogen bonds into a three-dimensional network, which incorporates R22(14) and R22(16) graph-set motifs.
of the title compound, CRelated literature
For the biological activity of amino benzoic acid and benzimidazole derivatives, see: Kumar et al. (2003); Stefan et al. (2002); Pan et al. (1999). For related structures, see: Narendra Babu et al. (2009); Abdul Rahim et al. (2010). For hydrogen-bond motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810029077/lh5088sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810029077/lh5088Isup2.hkl
Ethyl 4-(2-hydroxyethylamino)-3-nitro-benzoate (0.5 g, 1.96 mmol), ammonium formate (0.4 g, 6.8 mmol) and palladium on carbon (250 mg) were mixed in ethanol. The reaction mixture was irradiated under microwave conditions at 373K for 2 minutes. After completion, the reaction mixture was filtered through celite and the filtrate was concentrated under reduced pressure to yield the crude product. The product was recrystallised from EtOAc to afford the title compound as colourless crystals.
N-bound and O-bound H atoms were located from a difference Fourier map and refined isotropically. The remaining H atoms were positioned geometrically [C-H = 0.93, 0.96 or 0.97 Å] and were refined using a riding model, with Uiso(H) = xUeq(C), where x = 1.5 for methyl and 1.2 for all other atoms. A rotating model was used for the methyl group.
Amino benzoic acid derivatives are important intermediates for the synthesis of various
of pharmacological interests (Kumar et al., 2003). The synthesis of novel benzimidazole derivatives such as 2-aminomethyl benzimidazoles (Stefan et al., 2002) and oxobenzimidazoles (Pan et al., 1999) are commonly accessed via aminobenzoic acid derivatives. As part of an ongoing study on such compounds, we present the of the title compound (I), which was an intermediate in a synthesis.In the title molecule (Fig. 1), the bond lengths and angles are within normal ranges and are similiar to those in related structures (Narendra Babu et al., 2009; Abdul Rahim et al., 2010). The benzoate group is essentially planar with a maximum deviation of -0.006 (1) for atom C4.
In the
molecules are linked by intermolecular N2—H1N2···O3ii, N2—H2N2···O1iii and O1—H1O1···N2i hydrogen bonds (see Table 1 for symmetry codes) into a three-dimensional network with R22(14) and R22(16) graph-set motifs (Bernstein et al., 1995).For the biological activity of amino benzoic acid and benzimidazole derivatives, see: Kumar et al. (2003); Stefan et al. (2002); Pan et al. (1999). For related structures, see: Narendra Babu et al. (2009); Abdul Rahim et al. (2010). For hydrogen-bond motifs, see: Bernstein et al. (1995).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C11H16N2O3 | F(000) = 960 |
Mr = 224.26 | Dx = 1.226 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 8941 reflections |
a = 23.2300 (5) Å | θ = 2.8–30.6° |
b = 14.5914 (4) Å | µ = 0.09 mm−1 |
c = 7.5815 (1) Å | T = 296 K |
β = 108.931 (1)° | Block, colourless |
V = 2430.81 (9) Å3 | 0.55 × 0.37 × 0.25 mm |
Z = 8 |
Bruker SMART APEXII CCD area-detector diffractometer | 3739 independent reflections |
Radiation source: fine-focus sealed tube | 2597 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
φ and ω scans | θmax = 30.6°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −32→33 |
Tmin = 0.953, Tmax = 0.978 | k = −20→20 |
26584 measured reflections | l = −10→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.134 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0626P)2 + 0.4393P] where P = (Fo2 + 2Fc2)/3 |
3739 reflections | (Δ/σ)max < 0.001 |
162 parameters | Δρmax = 0.16 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C11H16N2O3 | V = 2430.81 (9) Å3 |
Mr = 224.26 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 23.2300 (5) Å | µ = 0.09 mm−1 |
b = 14.5914 (4) Å | T = 296 K |
c = 7.5815 (1) Å | 0.55 × 0.37 × 0.25 mm |
β = 108.931 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3739 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2597 reflections with I > 2σ(I) |
Tmin = 0.953, Tmax = 0.978 | Rint = 0.035 |
26584 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.134 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.16 e Å−3 |
3739 reflections | Δρmin = −0.21 e Å−3 |
162 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.07544 (4) | 0.04108 (6) | −0.13906 (13) | 0.0595 (2) | |
O2 | 0.17663 (4) | 0.52426 (6) | 0.03582 (14) | 0.0667 (3) | |
O3 | 0.24606 (4) | 0.41940 (7) | 0.03351 (18) | 0.0826 (3) | |
N1 | 0.01804 (4) | 0.17082 (8) | 0.01775 (14) | 0.0544 (2) | |
N2 | 0.13085 (5) | 0.11676 (7) | 0.00330 (14) | 0.0540 (2) | |
C1 | −0.07977 (6) | 0.10608 (9) | −0.00450 (17) | 0.0581 (3) | |
H1A | −0.0643 | 0.0789 | 0.1186 | 0.070* | |
H1B | −0.1223 | 0.1212 | −0.0277 | 0.070* | |
C2 | −0.04490 (5) | 0.19272 (8) | −0.00811 (16) | 0.0521 (3) | |
H2A | −0.0627 | 0.2237 | −0.1266 | 0.063* | |
H2B | −0.0472 | 0.2336 | 0.0903 | 0.063* | |
C3 | 0.05994 (5) | 0.23731 (8) | 0.01945 (15) | 0.0490 (3) | |
C4 | 0.04734 (5) | 0.33047 (8) | 0.02461 (19) | 0.0600 (3) | |
H4A | 0.0091 | 0.3487 | 0.0258 | 0.072* | |
C5 | 0.09038 (6) | 0.39616 (9) | 0.0280 (2) | 0.0623 (3) | |
H5A | 0.0809 | 0.4579 | 0.0308 | 0.075* | |
C6 | 0.14783 (5) | 0.37052 (8) | 0.02717 (16) | 0.0539 (3) | |
C7 | 0.16117 (5) | 0.27727 (8) | 0.02449 (15) | 0.0518 (3) | |
H7A | 0.1997 | 0.2597 | 0.0254 | 0.062* | |
C8 | 0.11884 (5) | 0.21078 (8) | 0.02050 (14) | 0.0479 (2) | |
C9 | 0.19533 (5) | 0.43832 (9) | 0.03180 (17) | 0.0575 (3) | |
C10 | 0.21965 (6) | 0.59737 (9) | 0.0476 (2) | 0.0668 (3) | |
H10A | 0.2336 | 0.5963 | −0.0598 | 0.080* | |
H10B | 0.2546 | 0.5910 | 0.1595 | 0.080* | |
C11 | 0.18689 (8) | 0.68429 (11) | 0.0526 (3) | 0.0838 (5) | |
H11A | 0.2149 | 0.7347 | 0.0733 | 0.126* | |
H11B | 0.1697 | 0.6817 | 0.1519 | 0.126* | |
H11C | 0.1550 | 0.6926 | −0.0640 | 0.126* | |
H1O1 | −0.0924 (7) | 0.0638 (11) | −0.246 (2) | 0.075 (4)* | |
H1N1 | 0.0238 (6) | 0.1165 (11) | −0.0138 (19) | 0.065 (4)* | |
H1N2 | 0.1691 (8) | 0.1076 (10) | 0.012 (2) | 0.072 (4)* | |
H2N2 | 0.1176 (7) | 0.0761 (10) | 0.072 (2) | 0.071 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0687 (5) | 0.0560 (5) | 0.0529 (5) | 0.0008 (4) | 0.0184 (4) | 0.0009 (4) |
O2 | 0.0536 (5) | 0.0594 (5) | 0.0905 (7) | −0.0071 (4) | 0.0280 (4) | −0.0010 (4) |
O3 | 0.0551 (5) | 0.0787 (7) | 0.1247 (9) | −0.0041 (4) | 0.0441 (5) | −0.0072 (6) |
N1 | 0.0481 (5) | 0.0538 (6) | 0.0645 (6) | −0.0011 (4) | 0.0226 (4) | −0.0009 (4) |
N2 | 0.0508 (5) | 0.0569 (6) | 0.0567 (6) | 0.0036 (4) | 0.0210 (4) | −0.0002 (4) |
C1 | 0.0572 (6) | 0.0655 (7) | 0.0577 (7) | −0.0079 (5) | 0.0270 (5) | −0.0043 (5) |
C2 | 0.0481 (6) | 0.0587 (6) | 0.0534 (6) | −0.0015 (5) | 0.0218 (5) | −0.0029 (5) |
C3 | 0.0452 (5) | 0.0574 (6) | 0.0461 (5) | −0.0014 (4) | 0.0172 (4) | −0.0015 (4) |
C4 | 0.0462 (6) | 0.0590 (7) | 0.0794 (8) | 0.0021 (5) | 0.0266 (6) | −0.0004 (6) |
C5 | 0.0533 (6) | 0.0541 (7) | 0.0839 (8) | 0.0020 (5) | 0.0285 (6) | −0.0005 (6) |
C6 | 0.0475 (6) | 0.0594 (7) | 0.0575 (6) | −0.0028 (5) | 0.0207 (5) | −0.0018 (5) |
C7 | 0.0436 (5) | 0.0638 (7) | 0.0501 (6) | 0.0018 (5) | 0.0180 (4) | −0.0015 (5) |
C8 | 0.0474 (5) | 0.0561 (6) | 0.0411 (5) | 0.0021 (4) | 0.0154 (4) | −0.0011 (4) |
C9 | 0.0510 (6) | 0.0643 (7) | 0.0600 (7) | −0.0028 (5) | 0.0219 (5) | −0.0024 (5) |
C10 | 0.0603 (7) | 0.0693 (8) | 0.0737 (8) | −0.0151 (6) | 0.0257 (6) | −0.0026 (6) |
C11 | 0.0976 (11) | 0.0696 (9) | 0.0974 (12) | −0.0124 (8) | 0.0499 (9) | −0.0071 (8) |
O1—C1 | 1.4203 (15) | C3—C4 | 1.3938 (17) |
O1—H1O1 | 0.844 (17) | C3—C8 | 1.4194 (15) |
O2—C9 | 1.3306 (16) | C4—C5 | 1.3792 (17) |
O2—C10 | 1.4447 (15) | C4—H4A | 0.9300 |
O3—C9 | 1.2065 (15) | C5—C6 | 1.3880 (16) |
N1—C3 | 1.3714 (14) | C5—H5A | 0.9300 |
N1—C2 | 1.4465 (14) | C6—C7 | 1.3972 (18) |
N1—H1N1 | 0.851 (15) | C6—C9 | 1.4738 (17) |
N2—C8 | 1.4144 (15) | C7—C8 | 1.3747 (16) |
N2—H1N2 | 0.880 (17) | C7—H7A | 0.9300 |
N2—H2N2 | 0.907 (16) | C10—C11 | 1.486 (2) |
C1—C2 | 1.5064 (17) | C10—H10A | 0.9700 |
C1—H1A | 0.9700 | C10—H10B | 0.9700 |
C1—H1B | 0.9700 | C11—H11A | 0.9600 |
C2—H2A | 0.9700 | C11—H11B | 0.9600 |
C2—H2B | 0.9700 | C11—H11C | 0.9600 |
C1—O1—H1O1 | 107.8 (11) | C4—C5—H5A | 119.8 |
C9—O2—C10 | 118.22 (10) | C6—C5—H5A | 119.8 |
C3—N1—C2 | 121.87 (10) | C5—C6—C7 | 118.72 (11) |
C3—N1—H1N1 | 119.1 (10) | C5—C6—C9 | 122.18 (11) |
C2—N1—H1N1 | 114.3 (10) | C7—C6—C9 | 119.10 (10) |
C8—N2—H1N2 | 111.4 (10) | C8—C7—C6 | 121.82 (10) |
C8—N2—H2N2 | 117.9 (9) | C8—C7—H7A | 119.1 |
H1N2—N2—H2N2 | 112.2 (13) | C6—C7—H7A | 119.1 |
O1—C1—C2 | 112.55 (9) | C7—C8—N2 | 121.69 (10) |
O1—C1—H1A | 109.1 | C7—C8—C3 | 119.27 (10) |
C2—C1—H1A | 109.1 | N2—C8—C3 | 118.86 (10) |
O1—C1—H1B | 109.1 | O3—C9—O2 | 122.72 (12) |
C2—C1—H1B | 109.1 | O3—C9—C6 | 124.60 (12) |
H1A—C1—H1B | 107.8 | O2—C9—C6 | 112.68 (10) |
N1—C2—C1 | 109.76 (10) | O2—C10—C11 | 106.38 (11) |
N1—C2—H2A | 109.7 | O2—C10—H10A | 110.5 |
C1—C2—H2A | 109.7 | C11—C10—H10A | 110.5 |
N1—C2—H2B | 109.7 | O2—C10—H10B | 110.5 |
C1—C2—H2B | 109.7 | C11—C10—H10B | 110.5 |
H2A—C2—H2B | 108.2 | H10A—C10—H10B | 108.6 |
N1—C3—C4 | 122.37 (10) | C10—C11—H11A | 109.5 |
N1—C3—C8 | 119.14 (10) | C10—C11—H11B | 109.5 |
C4—C3—C8 | 118.47 (10) | H11A—C11—H11B | 109.5 |
C5—C4—C3 | 121.38 (11) | C10—C11—H11C | 109.5 |
C5—C4—H4A | 119.3 | H11A—C11—H11C | 109.5 |
C3—C4—H4A | 119.3 | H11B—C11—H11C | 109.5 |
C4—C5—C6 | 120.33 (11) | ||
C3—N1—C2—C1 | 179.71 (10) | C6—C7—C8—C3 | −0.13 (16) |
O1—C1—C2—N1 | −56.17 (13) | N1—C3—C8—C7 | −179.22 (10) |
C2—N1—C3—C4 | 9.84 (17) | C4—C3—C8—C7 | −0.70 (16) |
C2—N1—C3—C8 | −171.70 (10) | N1—C3—C8—N2 | 5.47 (15) |
N1—C3—C4—C5 | 179.39 (12) | C4—C3—C8—N2 | −176.01 (10) |
C8—C3—C4—C5 | 0.93 (18) | C10—O2—C9—O3 | −1.65 (19) |
C3—C4—C5—C6 | −0.3 (2) | C10—O2—C9—C6 | 177.74 (10) |
C4—C5—C6—C7 | −0.54 (19) | C5—C6—C9—O3 | 179.09 (13) |
C4—C5—C6—C9 | −179.63 (12) | C7—C6—C9—O3 | 0.0 (2) |
C5—C6—C7—C8 | 0.76 (17) | C5—C6—C9—O2 | −0.29 (17) |
C9—C6—C7—C8 | 179.87 (10) | C7—C6—C9—O2 | −179.38 (10) |
C6—C7—C8—N2 | 175.04 (10) | C9—O2—C10—C11 | −179.15 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···N2i | 0.846 (15) | 2.017 (15) | 2.8628 (14) | 178.4 (14) |
N2—H1N2···O3ii | 0.880 (19) | 2.145 (19) | 3.0083 (16) | 167.0 (13) |
N2—H2N2···O1iii | 0.907 (15) | 2.113 (15) | 2.9800 (14) | 159.7 (13) |
Symmetry codes: (i) −x, y, −z−1/2; (ii) −x+1/2, −y+1/2, −z; (iii) −x, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C11H16N2O3 |
Mr | 224.26 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 296 |
a, b, c (Å) | 23.2300 (5), 14.5914 (4), 7.5815 (1) |
β (°) | 108.931 (1) |
V (Å3) | 2430.81 (9) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.55 × 0.37 × 0.25 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.953, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26584, 3739, 2597 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.717 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.134, 1.02 |
No. of reflections | 3739 |
No. of parameters | 162 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.16, −0.21 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···N2i | 0.846 (15) | 2.017 (15) | 2.8628 (14) | 178.4 (14) |
N2—H1N2···O3ii | 0.880 (19) | 2.145 (19) | 3.0083 (16) | 167.0 (13) |
N2—H2N2···O1iii | 0.907 (15) | 2.113 (15) | 2.9800 (14) | 159.7 (13) |
Symmetry codes: (i) −x, y, −z−1/2; (ii) −x+1/2, −y+1/2, −z; (iii) −x, −y, −z. |
Acknowledgements
NA, ASAR and SAH gratefully acknowledge the Ministry of Science, Technology and Innovations (MOSTI) Grant 304/PFARMASI/650512/I121 and the FRGS Grant (FRGS0510–119) for funding the synthetic chemistry work. NA thanks Universiti Sains Malaysia for the award of postdoctoral fellowship. HKF and MMR thank Universiti Sains Malaysia (USM) for the Research University Golden Goose Grant (1001/PFIZIK/811012).
References
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Amino benzoic acid derivatives are important intermediates for the synthesis of various heterocyclic compounds of pharmacological interests (Kumar et al., 2003). The synthesis of novel benzimidazole derivatives such as 2-aminomethyl benzimidazoles (Stefan et al., 2002) and oxobenzimidazoles (Pan et al., 1999) are commonly accessed via aminobenzoic acid derivatives. As part of an ongoing study on such compounds, we present the crystal structure of the title compound (I), which was an intermediate in a synthesis.
In the title molecule (Fig. 1), the bond lengths and angles are within normal ranges and are similiar to those in related structures (Narendra Babu et al., 2009; Abdul Rahim et al., 2010). The benzoate group is essentially planar with a maximum deviation of -0.006 (1) for atom C4.
In the crystal structure, molecules are linked by intermolecular N2—H1N2···O3ii, N2—H2N2···O1iii and O1—H1O1···N2i hydrogen bonds (see Table 1 for symmetry codes) into a three-dimensional network with R22(14) and R22(16) graph-set motifs (Bernstein et al., 1995).