organic compounds
Epoxycytochalasin H methanol solvate
aScientific Research Center, Chengdu Medical College, Chengdu 610083, People's Republic of China, and bChengdu Institute of Organic Chemistry, Chinese Academy of Sciences, Chengdu 610041, People's Republic of China
*Correspondence e-mail: qiangzou99@gmail.com
In the title solvate, C30H39NO5·CH4O {systematic name: 21-acetoxy-18,21-dihydroxy-5,6,16,18-tetramethyl-10-phenyl-6,7-epoxy-[11]cytochalasa-13,19-dien-1-one methanol solvate}, the organic molecule exhibits the tetracyclic terpenoid skeleton of cytochalasin, consisting of fused five-, six-, three- and 11-membered rings. The five-membered ring adopts an while the six-membered ring is in a boat conformation. The epoxy O atom on the six-membered ring is pointing away from the five-membered ring. An interstitial methanol solvent molecule is hydrogen bonded to the cytochalasin molecules and intermolecular O—H⋯O and N—H⋯O hydrogen bonds connect the molecules into infinite chains along the (10) direction.
Related literature
For the isolation and structure elucidation of the title compound, see: Cole et al. (1982). For related structures, see: Buchi et al. (1973); Beno et al. (1977); Capasso et al. (1988); Edwards & Maitland et al. (1989); Chen et al. (1993); Feng et al. (2002); Evidente et al. (2002, 2003); Rochfort et al. (2008); Herath et al. (2005); Ding et al. (2006). For total syntheses of related compounds, see: Haidle & Myers et al. (2004). For the biological activity of related compounds, see: Hirose et al. (1990); Lingham et al. (1992); Burres et al. (1992); Meurer-Grimes et al. (2005)
Experimental
Crystal data
|
Data collection
|
Refinement
|
Data collection: RAPID-AUTO (Rigaku, 2004); cell RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810029600/zl2284sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810029600/zl2284Isup2.hkl
A solid-state fermented rice culture (4 kg) of Phomopsis sp.108 was extracted with ethyl acetate. The solvent was evaporated in vacuo to afford a residue (60.0 g). This residue was separated over a silica gel column (Silica gel: 800 g) eluted with petroleum ether/acetone (3:1, 4000 ml) to afford fractions A (18.0 g), B (6.5 g), C (4.8 g), D (5.5 g), E (7.6 g). The title compound (0.5 g) was deposited repeatedly from fraction C in the solvent system of petroleum ether/acetone (2:1) (The Rf value of the title compound in this solvent system was 0.35). It was then crystallized in methanol by slow evaporation in a shady place to afford suitable crystals for single-crystal X-ray diffraction analysis.
13C NMR (150 MHz, CDCl3, δ, p.p.m.): 175.0(C1), 170.0(C29), 138.0(C14), 137.2(C31), 136.0(C20), 130.2(C24, 28), 128.7(C25, 27), 127.6(C19), 127.1(C13), 125.5(C26), 76.0(C21), 74.1(C18), 62.9(C7), 57.0(C6), 53.8(C3), 53.7(C17), 53.5(C9), 51.1(C4), 45.7(C15), 45.0(C8), 43.1(C10), 36.6(C5), 30.1(C16), 28.6(C23), 26.4(C22), 20.6(C30), 19.5(C12), 13.0(C11). The 13C NMR values are in accordance with those reported by Cole (Cole et al. (1982)).
All hydrogen atoms were located geometrically with C—H distances of 0.95–1.00 Å. The H of O-3, O-6 and N-2 were located in difference Fourier maps and were refined with O—H distances of 0.83 (3)–0.84 (3) Å. H atoms on carbon atoms were placed geometrically with C—H distances of 0.95–1.00 Å (Uiso(H) = 1.2Ueq(C)). The α]25D=-91° (c=0.1, CHCl3)) and the value ([α]30D=-84.68° (c=0.33, CHCl3)) reported by Cole (Cole et al. (1982)).
could not be determined from the X-ray analysis, owing to the absence of significant anomalous scatterers, and Friedel pairs were merged. However, when the title compound was orginally isolated by Cole (Cole et al. (1982)), its was confirmed by comparison with a similar compound (Cytochalasin H) of which the was previously reported by Beno (Beno et al. (1977)). Thus the of the title compound was assigned by a comparison between the measured ([The fungus Phomopsis sp.108 is a plant pathogen. Cytochalasins from this fungus inhibit a variety of cellular movements, including cell division and motility, and cause changes in cell shape. In our study on the chemical constituents of the
from this fungus, the title compound was isolated. Its structure was elucidated by spectroscopic analysis and was confirmed by single-crystal X-ray The (Fig. 1) of the title compound contains a cytochalasin-structure and a methanol molecule. The cytochalasin-structure has a tetracyclic terpenoid skeleton, consisting of fused five-, six-, three- and eleven-membered rings (A: C1/N2/C3—C4/C9, B: C4—C9, C: C6—C7/O1, D: C9—C8/C13—C21). Cis junctions are present between ring A and ring B and also ring B and ring C, while there is a trans junction is between ring B and ring D. Ring A adopts an while ring B is in a chair conformation. The epoxy atom in ring R is pointing away from ring A. Intermolecular O—H···O and N—H···O hydrogen bonds are present in the and an eight-membered ring is formed by the hydrogen bonding interaction between two cytochalasin molecules and one methanol molecule (Fig. 2).For the isolation and structure elucidation of the title compound, see: Cole et al. (1982). For related structures, see: Buchi et al. (1973); Beno et al. (1977); Capasso et al. (1988); Edwards & Maitland et al. (1989); Chen et al. (1993); Feng et al. (2002); Evidente et al. (2002, 2003); Rochfort et al. (2008); Herath et al. (2005); Ding et al. (2006). For total syntheses of related compounds, see: Haidle & Myers et al. (2004). For the biological activity of related compounds, see: Hirose et al. (1990); Lingham et al. (1992); Burres et al. (1992); Meurer-Grimes et al. (2005)
Data collection: RAPID-AUTO (Rigaku, 2004); cell
RAPID-AUTO (Rigaku, 2004); data reduction: RAPID-AUTO (Rigaku, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C30H39NO5·CH4O | F(000) = 284 |
Mr = 525.66 | Dx = 1.241 Mg m−3 |
Triclinic, P1 | Melting point: 398 K |
a = 8.367 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.5937 (18) Å | Cell parameters from 2524 reflections |
c = 10.917 (3) Å | θ = 3.2–27.5° |
α = 75.312 (9)° | µ = 0.09 mm−1 |
β = 87.779 (10)° | T = 93 K |
γ = 68.150 (8)° | Block, colorless |
V = 703.4 (3) Å3 | 0.50 × 0.50 × 0.28 mm |
Z = 1 |
Rigaku SPIDER diffractometer | 3015 reflections with I > 2σ(I) |
Radiation source: Rotating Anode | Rint = 0.022 |
Graphite monochromator | θmax = 27.5°, θmin = 3.2° |
ω scans | h = −10→10 |
7075 measured reflections | k = −11→10 |
3175 independent reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.070 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0338P)2 + 0.116P] where P = (Fo2 + 2Fc2)/3 |
3175 reflections | (Δ/σ)max < 0.001 |
361 parameters | Δρmax = 0.23 e Å−3 |
3 restraints | Δρmin = −0.16 e Å−3 |
C30H39NO5·CH4O | γ = 68.150 (8)° |
Mr = 525.66 | V = 703.4 (3) Å3 |
Triclinic, P1 | Z = 1 |
a = 8.367 (2) Å | Mo Kα radiation |
b = 8.5937 (18) Å | µ = 0.09 mm−1 |
c = 10.917 (3) Å | T = 93 K |
α = 75.312 (9)° | 0.50 × 0.50 × 0.28 mm |
β = 87.779 (10)° |
Rigaku SPIDER diffractometer | 3015 reflections with I > 2σ(I) |
7075 measured reflections | Rint = 0.022 |
3175 independent reflections |
R[F2 > 2σ(F2)] = 0.030 | 3 restraints |
wR(F2) = 0.070 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.23 e Å−3 |
3175 reflections | Δρmin = −0.16 e Å−3 |
361 parameters |
Experimental. 13C NMR (150 MHz, CDCl3, δ, p.p.m.): 175.0(C1), 170.0(C29), 138.0(C14), 137.2(C31), 136.0(C20), 130.2(C24,28), 128.7(C25, 27), 127.6(C19), 127.1(C13), 125.5(C26), 76.0(C21), 74.1(C18), 62.9(C7), 57.0(C6), 53.8(C3), 53.7(C17), 53.5(C9), 51.1(C4), 45.7(C15), 45.0(C8), 43.1(C10), 36.6(C5), 30.1(C16), 28.6(C23), 26.4(C22), 20.6(C30), 19.5(C12), 13.0(C11). And they are in accordance with those reported by Cole (Cole et al. (1982)). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.26599 (18) | 0.47464 (18) | 0.27188 (13) | 0.0196 (3) | |
O2 | 0.05816 (17) | 0.57776 (17) | 0.56786 (12) | 0.0187 (3) | |
O3 | 0.80244 (17) | 0.04100 (17) | 0.57468 (13) | 0.0173 (3) | |
O4 | 0.34749 (16) | 0.40110 (17) | 0.24838 (12) | 0.0161 (3) | |
O5 | 0.40913 (18) | 0.60342 (19) | 0.09849 (13) | 0.0233 (3) | |
N2 | −0.0535 (2) | 0.8235 (2) | 0.40622 (15) | 0.0155 (3) | |
C1 | 0.0353 (2) | 0.6548 (2) | 0.45346 (17) | 0.0145 (4) | |
C3 | −0.0527 (2) | 0.8866 (2) | 0.26910 (17) | 0.0141 (4) | |
H3 | −0.1731 | 0.9614 | 0.2336 | 0.017* | |
C4 | 0.0084 (2) | 0.7177 (2) | 0.22278 (16) | 0.0134 (3) | |
H4 | 0.0976 | 0.7227 | 0.1598 | 0.016* | |
C5 | −0.1383 (2) | 0.6900 (2) | 0.15966 (17) | 0.0151 (4) | |
H5 | −0.0812 | 0.5846 | 0.1273 | 0.018* | |
C6 | −0.2551 (2) | 0.6432 (2) | 0.26100 (17) | 0.0158 (4) | |
C7 | −0.1616 (2) | 0.4928 (2) | 0.36551 (17) | 0.0165 (4) | |
H7 | −0.2082 | 0.4926 | 0.4513 | 0.020* | |
C8 | 0.0336 (2) | 0.4143 (2) | 0.36131 (17) | 0.0148 (4) | |
H8 | 0.0586 | 0.3724 | 0.2825 | 0.018* | |
C9 | 0.0983 (2) | 0.5674 (2) | 0.34475 (17) | 0.0134 (3) | |
C10 | 0.0622 (2) | 0.9935 (2) | 0.23827 (17) | 0.0171 (4) | |
H10A | 0.0325 | 1.0756 | 0.2925 | 0.021* | |
H10B | 0.1837 | 0.9139 | 0.2611 | 0.021* | |
C11 | −0.2324 (3) | 0.8372 (3) | 0.04402 (18) | 0.0205 (4) | |
H11A | −0.3176 | 0.8074 | 0.0058 | 0.025* | |
H11B | −0.1488 | 0.8540 | −0.0183 | 0.025* | |
H11C | −0.2910 | 0.9444 | 0.0704 | 0.025* | |
C12 | −0.4211 (2) | 0.7803 (3) | 0.28126 (19) | 0.0204 (4) | |
H12A | −0.5006 | 0.8201 | 0.2063 | 0.024* | |
H12B | −0.3978 | 0.8785 | 0.2950 | 0.024* | |
H12C | −0.4732 | 0.7318 | 0.3557 | 0.024* | |
C13 | 0.1132 (2) | 0.2589 (2) | 0.47220 (18) | 0.0168 (4) | |
H13 | 0.0727 | 0.2658 | 0.5539 | 0.020* | |
C14 | 0.2369 (2) | 0.1131 (2) | 0.46122 (18) | 0.0172 (4) | |
H14 | 0.2774 | 0.1110 | 0.3789 | 0.021* | |
C15 | 0.3193 (2) | −0.0482 (2) | 0.56493 (18) | 0.0186 (4) | |
H15A | 0.3111 | −0.1477 | 0.5393 | 0.022* | |
H15B | 0.2547 | −0.0368 | 0.6421 | 0.022* | |
C16 | 0.5108 (2) | −0.0869 (2) | 0.59701 (18) | 0.0183 (4) | |
H16 | 0.5685 | −0.0715 | 0.5153 | 0.022* | |
C17 | 0.5316 (2) | 0.0393 (3) | 0.66833 (18) | 0.0177 (4) | |
H17A | 0.4150 | 0.1189 | 0.6813 | 0.021* | |
H17B | 0.5883 | −0.0291 | 0.7532 | 0.021* | |
C18 | 0.6351 (2) | 0.1496 (2) | 0.60366 (17) | 0.0151 (4) | |
C19 | 0.5449 (2) | 0.2644 (2) | 0.47624 (17) | 0.0152 (4) | |
H19 | 0.5953 | 0.2345 | 0.4018 | 0.018* | |
C20 | 0.4017 (2) | 0.4024 (3) | 0.46214 (17) | 0.0169 (4) | |
H20 | 0.3600 | 0.4394 | 0.5362 | 0.020* | |
C21 | 0.2980 (2) | 0.5068 (2) | 0.33880 (17) | 0.0143 (4) | |
H21 | 0.3281 | 0.6116 | 0.3058 | 0.017* | |
C22 | 0.5994 (3) | −0.2758 (3) | 0.6732 (2) | 0.0287 (5) | |
H22A | 0.5433 | −0.2951 | 0.7530 | 0.034* | |
H22B | 0.7213 | −0.3001 | 0.6915 | 0.034* | |
H22C | 0.5903 | −0.3531 | 0.6238 | 0.034* | |
C23 | 0.6591 (3) | 0.2519 (3) | 0.69262 (18) | 0.0193 (4) | |
H23A | 0.7233 | 0.1710 | 0.7710 | 0.023* | |
H23B | 0.5459 | 0.3267 | 0.7127 | 0.023* | |
H23C | 0.7235 | 0.3235 | 0.6512 | 0.023* | |
C24 | 0.1621 (3) | 1.0297 (3) | 0.0148 (2) | 0.0231 (4) | |
H24 | 0.2495 | 0.9170 | 0.0403 | 0.028* | |
C25 | 0.1483 (3) | 1.1291 (3) | −0.1103 (2) | 0.0333 (5) | |
H25 | 0.2264 | 1.0832 | −0.1693 | 0.040* | |
C26 | 0.0226 (4) | 1.2931 (3) | −0.1488 (2) | 0.0346 (6) | |
H26 | 0.0144 | 1.3602 | −0.2338 | 0.042* | |
C27 | −0.0913 (4) | 1.3590 (3) | −0.0630 (2) | 0.0331 (5) | |
H27 | −0.1783 | 1.4719 | −0.0890 | 0.040* | |
C28 | −0.0791 (3) | 1.2605 (3) | 0.06136 (19) | 0.0235 (4) | |
H28 | −0.1586 | 1.3066 | 0.1196 | 0.028* | |
C29 | 0.4050 (2) | 0.4611 (3) | 0.13584 (17) | 0.0180 (4) | |
C30 | 0.4606 (3) | 0.3225 (3) | 0.0651 (2) | 0.0293 (5) | |
H30A | 0.5033 | 0.3652 | −0.0163 | 0.035* | |
H30B | 0.3620 | 0.2928 | 0.0500 | 0.035* | |
H30C | 0.5526 | 0.2191 | 0.1155 | 0.035* | |
C31 | 0.0484 (2) | 1.0952 (2) | 0.10157 (18) | 0.0165 (4) | |
O6 | 1.0050 (2) | −0.2459 (2) | 0.75153 (14) | 0.0272 (3) | |
C32 | 1.1481 (3) | −0.3222 (3) | 0.8413 (2) | 0.0270 (5) | |
H32A | 1.1523 | −0.2359 | 0.8837 | 0.032* | |
H32B | 1.2546 | −0.3629 | 0.7979 | 0.032* | |
H32C | 1.1363 | −0.4205 | 0.9044 | 0.032* | |
H6O | 1.023 (4) | −0.304 (4) | 0.698 (3) | 0.036 (8)* | |
H3O | 0.856 (4) | −0.027 (4) | 0.641 (3) | 0.043 (8)* | |
H2N | −0.098 (3) | 0.897 (3) | 0.455 (2) | 0.025 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0189 (7) | 0.0198 (7) | 0.0219 (7) | −0.0094 (6) | −0.0008 (5) | −0.0053 (6) |
O2 | 0.0231 (7) | 0.0167 (7) | 0.0131 (6) | −0.0052 (6) | 0.0016 (5) | −0.0020 (5) |
O3 | 0.0116 (6) | 0.0165 (7) | 0.0176 (7) | 0.0010 (5) | −0.0018 (5) | −0.0032 (6) |
O4 | 0.0153 (6) | 0.0157 (7) | 0.0150 (6) | −0.0027 (5) | 0.0010 (5) | −0.0050 (5) |
O5 | 0.0200 (7) | 0.0246 (8) | 0.0202 (7) | −0.0062 (6) | 0.0026 (5) | −0.0004 (6) |
N2 | 0.0172 (8) | 0.0126 (8) | 0.0142 (8) | −0.0023 (6) | 0.0018 (6) | −0.0041 (6) |
C1 | 0.0118 (8) | 0.0153 (9) | 0.0161 (9) | −0.0048 (7) | 0.0012 (6) | −0.0042 (7) |
C3 | 0.0139 (8) | 0.0129 (9) | 0.0129 (8) | −0.0027 (7) | 0.0003 (6) | −0.0024 (7) |
C4 | 0.0123 (8) | 0.0134 (9) | 0.0118 (8) | −0.0025 (7) | 0.0003 (6) | −0.0023 (7) |
C5 | 0.0143 (9) | 0.0154 (9) | 0.0139 (8) | −0.0038 (7) | −0.0006 (6) | −0.0035 (7) |
C6 | 0.0137 (9) | 0.0170 (10) | 0.0179 (9) | −0.0062 (7) | −0.0011 (7) | −0.0055 (7) |
C7 | 0.0153 (9) | 0.0188 (10) | 0.0168 (9) | −0.0084 (8) | 0.0016 (7) | −0.0042 (7) |
C8 | 0.0150 (9) | 0.0136 (9) | 0.0153 (9) | −0.0050 (7) | 0.0005 (7) | −0.0034 (7) |
C9 | 0.0130 (8) | 0.0115 (9) | 0.0134 (8) | −0.0027 (7) | −0.0001 (6) | −0.0017 (7) |
C10 | 0.0192 (9) | 0.0161 (10) | 0.0165 (9) | −0.0073 (8) | −0.0021 (7) | −0.0034 (7) |
C11 | 0.0208 (10) | 0.0214 (11) | 0.0162 (9) | −0.0049 (8) | −0.0036 (7) | −0.0037 (8) |
C12 | 0.0147 (9) | 0.0244 (11) | 0.0220 (9) | −0.0064 (8) | 0.0012 (7) | −0.0076 (8) |
C13 | 0.0179 (9) | 0.0166 (9) | 0.0169 (9) | −0.0082 (8) | 0.0002 (7) | −0.0029 (7) |
C14 | 0.0193 (9) | 0.0165 (10) | 0.0171 (9) | −0.0096 (8) | −0.0019 (7) | −0.0018 (7) |
C15 | 0.0191 (9) | 0.0135 (10) | 0.0230 (10) | −0.0066 (8) | −0.0017 (7) | −0.0030 (8) |
C16 | 0.0165 (9) | 0.0143 (9) | 0.0221 (10) | −0.0041 (7) | −0.0015 (7) | −0.0033 (8) |
C17 | 0.0179 (9) | 0.0177 (10) | 0.0162 (9) | −0.0066 (8) | 0.0007 (7) | −0.0025 (7) |
C18 | 0.0126 (8) | 0.0142 (9) | 0.0155 (9) | −0.0021 (7) | −0.0001 (6) | −0.0028 (7) |
C19 | 0.0155 (9) | 0.0154 (9) | 0.0151 (9) | −0.0062 (7) | 0.0020 (7) | −0.0041 (7) |
C20 | 0.0164 (9) | 0.0194 (10) | 0.0145 (9) | −0.0053 (8) | 0.0002 (7) | −0.0056 (7) |
C21 | 0.0156 (8) | 0.0121 (9) | 0.0144 (8) | −0.0041 (7) | 0.0017 (7) | −0.0038 (7) |
C22 | 0.0228 (11) | 0.0158 (10) | 0.0417 (13) | −0.0042 (9) | −0.0060 (9) | −0.0009 (9) |
C23 | 0.0213 (10) | 0.0164 (10) | 0.0192 (9) | −0.0054 (8) | −0.0020 (7) | −0.0048 (8) |
C24 | 0.0233 (10) | 0.0235 (11) | 0.0259 (10) | −0.0114 (9) | 0.0062 (8) | −0.0090 (9) |
C25 | 0.0455 (14) | 0.0428 (15) | 0.0246 (11) | −0.0288 (12) | 0.0159 (10) | −0.0140 (11) |
C26 | 0.0605 (17) | 0.0341 (13) | 0.0178 (10) | −0.0319 (13) | 0.0010 (10) | 0.0006 (9) |
C27 | 0.0493 (15) | 0.0190 (11) | 0.0265 (11) | −0.0121 (11) | −0.0105 (10) | 0.0024 (9) |
C28 | 0.0305 (11) | 0.0186 (10) | 0.0201 (10) | −0.0081 (9) | 0.0004 (8) | −0.0040 (8) |
C29 | 0.0129 (8) | 0.0209 (10) | 0.0144 (9) | −0.0011 (7) | −0.0004 (7) | −0.0027 (7) |
C30 | 0.0300 (12) | 0.0277 (12) | 0.0203 (10) | 0.0016 (9) | 0.0032 (8) | −0.0086 (9) |
C31 | 0.0197 (9) | 0.0150 (9) | 0.0185 (9) | −0.0107 (8) | 0.0000 (7) | −0.0040 (7) |
O6 | 0.0292 (8) | 0.0218 (8) | 0.0222 (8) | 0.0026 (6) | −0.0077 (6) | −0.0086 (6) |
C32 | 0.0262 (11) | 0.0287 (12) | 0.0241 (10) | −0.0094 (9) | −0.0045 (8) | −0.0037 (9) |
O1—C7 | 1.444 (2) | C15—C16 | 1.545 (3) |
O1—C6 | 1.460 (2) | C15—H15A | 0.9900 |
O2—C1 | 1.241 (2) | C15—H15B | 0.9900 |
O3—C18 | 1.440 (2) | C16—C22 | 1.531 (3) |
O3—H3O | 0.83 (3) | C16—C17 | 1.547 (3) |
O4—C29 | 1.351 (2) | C16—H16 | 1.0000 |
O4—C21 | 1.454 (2) | C17—C18 | 1.540 (3) |
O5—C29 | 1.200 (3) | C17—H17A | 0.9900 |
N2—C1 | 1.330 (2) | C17—H17B | 0.9900 |
N2—C3 | 1.458 (2) | C18—C19 | 1.519 (3) |
N2—H2N | 0.90 (3) | C18—C23 | 1.528 (3) |
C1—C9 | 1.536 (2) | C19—C20 | 1.315 (3) |
C3—C10 | 1.535 (3) | C19—H19 | 0.9500 |
C3—C4 | 1.557 (2) | C20—C21 | 1.506 (3) |
C3—H3 | 1.0000 | C20—H20 | 0.9500 |
C4—C5 | 1.551 (2) | C21—H21 | 1.0000 |
C4—C9 | 1.578 (2) | C22—H22A | 0.9800 |
C4—H4 | 1.0000 | C22—H22B | 0.9800 |
C5—C6 | 1.524 (2) | C22—H22C | 0.9800 |
C5—C11 | 1.530 (3) | C23—H23A | 0.9800 |
C5—H5 | 1.0000 | C23—H23B | 0.9800 |
C6—C7 | 1.467 (3) | C23—H23C | 0.9800 |
C6—C12 | 1.502 (3) | C24—C31 | 1.386 (3) |
C7—C8 | 1.521 (3) | C24—C25 | 1.398 (3) |
C7—H7 | 1.0000 | C24—H24 | 0.9500 |
C8—C13 | 1.508 (3) | C25—C26 | 1.378 (4) |
C8—C9 | 1.569 (2) | C25—H25 | 0.9500 |
C8—H8 | 1.0000 | C26—C27 | 1.379 (4) |
C9—C21 | 1.559 (2) | C26—H26 | 0.9500 |
C10—C31 | 1.510 (3) | C27—C28 | 1.390 (3) |
C10—H10A | 0.9900 | C27—H27 | 0.9500 |
C10—H10B | 0.9900 | C28—C31 | 1.393 (3) |
C11—H11A | 0.9800 | C28—H28 | 0.9500 |
C11—H11B | 0.9800 | C29—C30 | 1.502 (3) |
C11—H11C | 0.9800 | C30—H30A | 0.9800 |
C12—H12A | 0.9800 | C30—H30B | 0.9800 |
C12—H12B | 0.9800 | C30—H30C | 0.9800 |
C12—H12C | 0.9800 | O6—C32 | 1.416 (3) |
C13—C14 | 1.325 (3) | O6—H6O | 0.84 (3) |
C13—H13 | 0.9500 | C32—H32A | 0.9800 |
C14—C15 | 1.494 (3) | C32—H32B | 0.9800 |
C14—H14 | 0.9500 | C32—H32C | 0.9800 |
C7—O1—C6 | 60.70 (12) | C16—C15—H15B | 108.9 |
C18—O3—H3O | 109 (2) | H15A—C15—H15B | 107.7 |
C29—O4—C21 | 119.78 (14) | C22—C16—C15 | 109.93 (16) |
C1—N2—C3 | 115.28 (15) | C22—C16—C17 | 111.15 (17) |
C1—N2—H2N | 122.7 (16) | C15—C16—C17 | 112.02 (15) |
C3—N2—H2N | 121.5 (16) | C22—C16—H16 | 107.9 |
O2—C1—N2 | 125.31 (17) | C15—C16—H16 | 107.9 |
O2—C1—C9 | 124.87 (17) | C17—C16—H16 | 107.9 |
N2—C1—C9 | 109.76 (15) | C18—C17—C16 | 116.27 (15) |
N2—C3—C10 | 109.65 (14) | C18—C17—H17A | 108.2 |
N2—C3—C4 | 103.39 (14) | C16—C17—H17A | 108.2 |
C10—C3—C4 | 115.66 (15) | C18—C17—H17B | 108.2 |
N2—C3—H3 | 109.3 | C16—C17—H17B | 108.2 |
C10—C3—H3 | 109.3 | H17A—C17—H17B | 107.4 |
C4—C3—H3 | 109.3 | O3—C18—C19 | 105.29 (14) |
C5—C4—C3 | 113.89 (14) | O3—C18—C23 | 108.79 (15) |
C5—C4—C9 | 112.81 (14) | C19—C18—C23 | 113.22 (15) |
C3—C4—C9 | 104.64 (14) | O3—C18—C17 | 110.76 (15) |
C5—C4—H4 | 108.4 | C19—C18—C17 | 109.41 (15) |
C3—C4—H4 | 108.4 | C23—C18—C17 | 109.31 (15) |
C9—C4—H4 | 108.4 | C20—C19—C18 | 124.34 (16) |
C6—C5—C11 | 114.86 (16) | C20—C19—H19 | 117.8 |
C6—C5—C4 | 109.27 (14) | C18—C19—H19 | 117.8 |
C11—C5—C4 | 113.97 (15) | C19—C20—C21 | 125.68 (17) |
C6—C5—H5 | 106.0 | C19—C20—H20 | 117.2 |
C11—C5—H5 | 106.0 | C21—C20—H20 | 117.2 |
C4—C5—H5 | 106.0 | O4—C21—C20 | 108.18 (15) |
O1—C6—C7 | 59.09 (11) | O4—C21—C9 | 107.03 (14) |
O1—C6—C12 | 114.16 (15) | C20—C21—C9 | 115.88 (15) |
C7—C6—C12 | 120.90 (16) | O4—C21—H21 | 108.5 |
O1—C6—C5 | 114.31 (15) | C20—C21—H21 | 108.5 |
C7—C6—C5 | 113.23 (15) | C9—C21—H21 | 108.5 |
C12—C6—C5 | 120.09 (16) | C16—C22—H22A | 109.5 |
O1—C7—C6 | 60.21 (12) | C16—C22—H22B | 109.5 |
O1—C7—C8 | 118.13 (15) | H22A—C22—H22B | 109.5 |
C6—C7—C8 | 116.79 (15) | C16—C22—H22C | 109.5 |
O1—C7—H7 | 116.6 | H22A—C22—H22C | 109.5 |
C6—C7—H7 | 116.6 | H22B—C22—H22C | 109.5 |
C8—C7—H7 | 116.6 | C18—C23—H23A | 109.5 |
C13—C8—C7 | 111.45 (15) | C18—C23—H23B | 109.5 |
C13—C8—C9 | 116.96 (15) | H23A—C23—H23B | 109.5 |
C7—C8—C9 | 106.34 (14) | C18—C23—H23C | 109.5 |
C13—C8—H8 | 107.2 | H23A—C23—H23C | 109.5 |
C7—C8—H8 | 107.2 | H23B—C23—H23C | 109.5 |
C9—C8—H8 | 107.2 | C31—C24—C25 | 120.2 (2) |
C1—C9—C21 | 111.33 (14) | C31—C24—H24 | 119.9 |
C1—C9—C8 | 108.67 (14) | C25—C24—H24 | 119.9 |
C21—C9—C8 | 112.47 (14) | C26—C25—C24 | 120.7 (2) |
C1—C9—C4 | 103.13 (14) | C26—C25—H25 | 119.7 |
C21—C9—C4 | 109.56 (14) | C24—C25—H25 | 119.7 |
C8—C9—C4 | 111.29 (14) | C25—C26—C27 | 119.5 (2) |
C31—C10—C3 | 115.31 (15) | C25—C26—H26 | 120.2 |
C31—C10—H10A | 108.4 | C27—C26—H26 | 120.2 |
C3—C10—H10A | 108.4 | C26—C27—C28 | 120.2 (2) |
C31—C10—H10B | 108.4 | C26—C27—H27 | 119.9 |
C3—C10—H10B | 108.4 | C28—C27—H27 | 119.9 |
H10A—C10—H10B | 107.5 | C27—C28—C31 | 120.8 (2) |
C5—C11—H11A | 109.5 | C27—C28—H28 | 119.6 |
C5—C11—H11B | 109.5 | C31—C28—H28 | 119.6 |
H11A—C11—H11B | 109.5 | O5—C29—O4 | 125.02 (18) |
C5—C11—H11C | 109.5 | O5—C29—C30 | 125.77 (18) |
H11A—C11—H11C | 109.5 | O4—C29—C30 | 109.20 (17) |
H11B—C11—H11C | 109.5 | C29—C30—H30A | 109.5 |
C6—C12—H12A | 109.5 | C29—C30—H30B | 109.5 |
C6—C12—H12B | 109.5 | H30A—C30—H30B | 109.5 |
H12A—C12—H12B | 109.5 | C29—C30—H30C | 109.5 |
C6—C12—H12C | 109.5 | H30A—C30—H30C | 109.5 |
H12A—C12—H12C | 109.5 | H30B—C30—H30C | 109.5 |
H12B—C12—H12C | 109.5 | C24—C31—C28 | 118.69 (18) |
C14—C13—C8 | 123.18 (17) | C24—C31—C10 | 121.66 (18) |
C14—C13—H13 | 118.4 | C28—C31—C10 | 119.63 (17) |
C8—C13—H13 | 118.4 | C32—O6—H6O | 108 (2) |
C13—C14—C15 | 126.72 (18) | O6—C32—H32A | 109.5 |
C13—C14—H14 | 116.6 | O6—C32—H32B | 109.5 |
C15—C14—H14 | 116.6 | H32A—C32—H32B | 109.5 |
C14—C15—C16 | 113.25 (15) | O6—C32—H32C | 109.5 |
C14—C15—H15A | 108.9 | H32A—C32—H32C | 109.5 |
C16—C15—H15A | 108.9 | H32B—C32—H32C | 109.5 |
C14—C15—H15B | 108.9 | ||
C3—N2—C1—O2 | 176.02 (17) | C5—C4—C9—C21 | 132.78 (15) |
C3—N2—C1—C9 | −6.7 (2) | C3—C4—C9—C21 | −102.89 (16) |
C1—N2—C3—C10 | −107.04 (18) | C5—C4—C9—C8 | 7.8 (2) |
C1—N2—C3—C4 | 16.9 (2) | C3—C4—C9—C8 | 132.09 (15) |
N2—C3—C4—C5 | 104.44 (16) | N2—C3—C10—C31 | −168.78 (15) |
C10—C3—C4—C5 | −135.70 (16) | C4—C3—C10—C31 | 74.8 (2) |
N2—C3—C4—C9 | −19.19 (17) | C7—C8—C13—C14 | 136.71 (19) |
C10—C3—C4—C9 | 100.67 (17) | C9—C8—C13—C14 | −100.7 (2) |
C3—C4—C5—C6 | −71.29 (19) | C8—C13—C14—C15 | −178.15 (17) |
C9—C4—C5—C6 | 47.79 (19) | C13—C14—C15—C16 | −112.7 (2) |
C3—C4—C5—C11 | 58.7 (2) | C14—C15—C16—C22 | −163.36 (17) |
C9—C4—C5—C11 | 177.80 (15) | C14—C15—C16—C17 | 72.5 (2) |
C7—O1—C6—C12 | −112.79 (18) | C22—C16—C17—C18 | 116.22 (19) |
C7—O1—C6—C5 | 103.53 (17) | C15—C16—C17—C18 | −120.37 (18) |
C11—C5—C6—O1 | 110.27 (17) | C16—C17—C18—O3 | −54.2 (2) |
C4—C5—C6—O1 | −120.21 (16) | C16—C17—C18—C19 | 61.4 (2) |
C11—C5—C6—C7 | 175.47 (15) | C16—C17—C18—C23 | −174.07 (16) |
C4—C5—C6—C7 | −55.0 (2) | O3—C18—C19—C20 | −167.40 (17) |
C11—C5—C6—C12 | −31.1 (2) | C23—C18—C19—C20 | −48.7 (2) |
C4—C5—C6—C12 | 98.44 (19) | C17—C18—C19—C20 | 73.5 (2) |
C6—O1—C7—C8 | −106.43 (18) | C18—C19—C20—C21 | −172.52 (17) |
C12—C6—C7—O1 | 101.40 (18) | C29—O4—C21—C20 | −124.04 (17) |
C5—C6—C7—O1 | −105.38 (16) | C29—O4—C21—C9 | 110.43 (17) |
O1—C6—C7—C8 | 108.64 (17) | C19—C20—C21—O4 | 18.5 (3) |
C12—C6—C7—C8 | −149.96 (17) | C19—C20—C21—C9 | 138.65 (19) |
C5—C6—C7—C8 | 3.3 (2) | C1—C9—C21—O4 | 170.55 (14) |
O1—C7—C8—C13 | −109.94 (18) | C8—C9—C21—O4 | 48.30 (18) |
C6—C7—C8—C13 | −178.77 (15) | C4—C9—C21—O4 | −76.03 (17) |
O1—C7—C8—C9 | 121.54 (16) | C1—C9—C21—C20 | 49.8 (2) |
C6—C7—C8—C9 | 52.7 (2) | C8—C9—C21—C20 | −72.4 (2) |
O2—C1—C9—C21 | −71.7 (2) | C4—C9—C21—C20 | 163.22 (15) |
N2—C1—C9—C21 | 110.94 (17) | C31—C24—C25—C26 | 0.2 (3) |
O2—C1—C9—C8 | 52.7 (2) | C24—C25—C26—C27 | −0.4 (4) |
N2—C1—C9—C8 | −124.65 (16) | C25—C26—C27—C28 | 0.0 (4) |
O2—C1—C9—C4 | 170.86 (17) | C26—C27—C28—C31 | 0.5 (3) |
N2—C1—C9—C4 | −6.46 (18) | C21—O4—C29—O5 | −5.2 (3) |
C13—C8—C9—C1 | −68.96 (19) | C21—O4—C29—C30 | 175.47 (16) |
C7—C8—C9—C1 | 56.26 (18) | C25—C24—C31—C28 | 0.3 (3) |
C13—C8—C9—C21 | 54.8 (2) | C25—C24—C31—C10 | −178.39 (18) |
C7—C8—C9—C21 | 179.99 (14) | C27—C28—C31—C24 | −0.6 (3) |
C13—C8—C9—C4 | 178.15 (15) | C27—C28—C31—C10 | 178.06 (19) |
C7—C8—C9—C4 | −56.64 (18) | C3—C10—C31—C24 | −95.0 (2) |
C5—C4—C9—C1 | −108.57 (16) | C3—C10—C31—C28 | 86.4 (2) |
C3—C4—C9—C1 | 15.75 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O6 | 0.83 (3) | 1.94 (3) | 2.722 (2) | 157 (3) |
N2—H2N···O3i | 0.90 (3) | 1.97 (3) | 2.867 (2) | 175 (2) |
O6—H6O···O2ii | 0.84 (3) | 1.90 (3) | 2.736 (2) | 176 (3) |
Symmetry codes: (i) x−1, y+1, z; (ii) x+1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C30H39NO5·CH4O |
Mr | 525.66 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 93 |
a, b, c (Å) | 8.367 (2), 8.5937 (18), 10.917 (3) |
α, β, γ (°) | 75.312 (9), 87.779 (10), 68.150 (8) |
V (Å3) | 703.4 (3) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.50 × 0.50 × 0.28 |
Data collection | |
Diffractometer | Rigaku SPIDER |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7075, 3175, 3015 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.070, 1.00 |
No. of reflections | 3175 |
No. of parameters | 361 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.23, −0.16 |
Computer programs: RAPID-AUTO (Rigaku, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O6 | 0.83 (3) | 1.94 (3) | 2.722 (2) | 157 (3) |
N2—H2N···O3i | 0.90 (3) | 1.97 (3) | 2.867 (2) | 175 (2) |
O6—H6O···O2ii | 0.84 (3) | 1.90 (3) | 2.736 (2) | 176 (3) |
Symmetry codes: (i) x−1, y+1, z; (ii) x+1, y−1, z. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (No. 30972869 to L-ML and No. 30772771 to QZ), the Key Project of the Chinese Ministry of Education (No. 209104 to QZ) and the Scientific Research Fund of Sichuan Provincial Education Department (No. 07ZA179 to L-ML).
References
Beno, M. A., Cox, R. H., Wells, J. M., Cole, R. J., Kirksey, J. W. & Christoph, G. G. (1977). J. Am. Chem. Soc. 99, 4123–4130. CSD CrossRef CAS PubMed Web of Science Google Scholar
Buchi, G., Kitaura, Y., Yuan, S., Wright, H. E., Clardy, J., Demain, A. L., Glinsukon, T., Hunt, N. & Wogan, G. N. (1973). J. Am. Chem. Soc. 95, 5423–5425. CAS PubMed Web of Science Google Scholar
Burres, N. S., Premachandran, U., Humphrey, P. E., Jackson, M. & Chen, R. H. (1992). J. Antibiot. 45, 1367–1369. CrossRef PubMed CAS Web of Science Google Scholar
Capasso, R., Evidente, A. & Ritieni, A. (1988). J. Nat. Prod. 51, 567–571. CrossRef CAS PubMed Web of Science Google Scholar
Chen, T. S., Doss, G. A., Hsu, A., Lingham, R. B., White, R. F. & Monaghan, R. L. (1993). J. Nat. Prod. 56, 755–761. CrossRef CAS PubMed Web of Science Google Scholar
Cole, R. J., Wilson, D. M., Harper, J. L., Cox, R. H., Cochran, T. W., Cutler, H. G. & Bell, D. K. (1982). J. Agric. Food Chem. 30, 301–304. CrossRef CAS Web of Science Google Scholar
Ding, G., Song, Y. C., Chen, J. R., Xu, C., Ge, H. M., Wang, X. T. & Tan, R. X. (2006). J. Nat. Prod. 69, 302–304. Web of Science CrossRef PubMed CAS Google Scholar
Edwards, R. L. & Maitland, D. J. (1989). J. Chem. Soc. Perkin Trans. 1, pp. 57–65. CrossRef Web of Science Google Scholar
Evidente, A., Andolfi, A., Vurro, M., Zonno, M. C. & Motta, A. (2002). Phytochemistry, 60, 45–53. Web of Science CrossRef PubMed CAS Google Scholar
Evidente, A., Andolfi, A., Vurro, M., Zonno, M. C. & Motta, A. (2003). J. Nat. Prod. 66, 1540–1544. Web of Science CrossRef PubMed CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Feng, Y., Blunt, J. W., Cole, A. L. J. & Munro, M. H. G. (2002). J. Nat. Prod. 65, 1274–1277. Web of Science CrossRef PubMed CAS Google Scholar
Haidle, A. M. & Myers, A. G. (2004). Proc. Natl. Acad. Sci. USA, 101, 12048–12053. Web of Science CrossRef PubMed CAS Google Scholar
Herath, K. B., Jayasuriya, H., Ondeyka, J. G., Polishook, J. D., Bills, G. F., Dombrowski, A. W., Cabelo, A., Vicario, P. P., Zweerink, H., Guan, Z. & Singh, S. B. (2005). J. Antibiot. 58, 689–694. CrossRef Google Scholar
Hirose, T., Izawa, Y., Koyama, K., Natori, S., Iida, K., Yahara, I., Shimaoka, S. & Maruyama, K. (1990). Chem. Pharm. Bull. 38, 971–974. CrossRef CAS PubMed Web of Science Google Scholar
Lingham, R. B., Hsu, A., Silverman, K. C., Bills, G. F., Dombrowski, A., Goldman, M. E., Darke, P. L., Huang, L., Koch, G., Ondeyka, J. G. & Goetz, M. A. (1992). J. Antibiot. 45, 686–691. CrossRef PubMed CAS Web of Science Google Scholar
Meurer-Grimes, B., Cox, S., Coates, J. & Rhodes, D. (2005). J. Antibiot. 58, 279–283. Web of Science PubMed Google Scholar
Rigaku (2004). RAPID-AUTO. Version 3.0. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rochfort, S., Ford, J., Ovenden, S., Wan, S. S., George, S., Wildman, H., Tait, R. M., Zhang, Y., Tian, R., Liu, S., Chen, X., Liu, X. & Che, Y. (2008). Bioorg. Med. Chem. 16, 2627–2634. Web of Science PubMed Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The fungus Phomopsis sp.108 is a plant pathogen. Cytochalasins from this fungus inhibit a variety of cellular movements, including cell division and motility, and cause changes in cell shape. In our study on the chemical constituents of the secondary metabolites from this fungus, the title compound was isolated. Its structure was elucidated by spectroscopic analysis and was confirmed by single-crystal X-ray diffraction analysis. The asymmetric unit (Fig. 1) of the title compound contains a cytochalasin-structure and a methanol molecule. The cytochalasin-structure has a tetracyclic terpenoid skeleton, consisting of fused five-, six-, three- and eleven-membered rings (A: C1/N2/C3—C4/C9, B: C4—C9, C: C6—C7/O1, D: C9—C8/C13—C21). Cis junctions are present between ring A and ring B and also ring B and ring C, while there is a trans junction is between ring B and ring D. Ring A adopts an envelope conformation while ring B is in a chair conformation. The epoxy atom in ring R is pointing away from ring A. Intermolecular O—H···O and N—H···O hydrogen bonds are present in the crystal structure, and an eight-membered ring is formed by the hydrogen bonding interaction between two cytochalasin molecules and one methanol molecule (Fig. 2).