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[1R-(1α,2α,4α,5β,6α,7α)]-4-Benzoyl­oxymethyl-5,6-dihy­dr­oxy-3,8-dioxa­tri­cyclo­[5.1.0.02,4]octan-5-yl acetate (3-de­acetyl­crotepoxide) from Kaempferia rotunda Val.

aDepartment of Chemistry, Universiti Teknologi Malaysia, 81310 Skudai, Malaysia, and bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my

(Received 20 October 2010; accepted 20 October 2010; online 30 October 2010)

The title compound, C16H16O7, isolated from Kaempferia rotunda rhizomes, features a six-membered cyclo­hexane ring that adopts a twisted-boat conformation owing to the presence of two adjacent epoxide attachments that lock in four of the six axial positions. The CH3CO2– and HO– substituents occupy equatorial positions. However, the bond angles at the ring carbon connected to the C6H5CO2CH2– substituent deviate signifcantly from the idealized tetra­hedral angles as the carbon atom is part of an epoxide ring. In the crystal, the molecules are linked into chains by O—H⋯O hydrogen bonds.

Related literature

For the isolation of the compound from Kaempferia rotunda, see: Pancharoen et al. (1996[Pancharoen, O., Tuntiwachwuttikul, P. & Taylor, W. C. (1996). Phytochemistry, 43, 305-308.]).

[Scheme 1]

Experimental

Crystal data
  • C16H16O7

  • Mr = 320.29

  • Orthorhombic, P 21 21 21

  • a = 5.7451 (7) Å

  • b = 7.1746 (9) Å

  • c = 35.708 (5) Å

  • V = 1471.9 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.12 mm−1

  • T = 100 K

  • 0.35 × 0.05 × 0.05 mm

Data collection
  • Bruker SMART APEX diffractometer

  • 14228 measured reflections

  • 2011 independent reflections

  • 1730 reflections with I > 2σ(I)

  • Rint = 0.073

Refinement
  • R[F2 > 2σ(F2)] = 0.038

  • wR(F2) = 0.117

  • S = 1.12

  • 2011 reflections

  • 213 parameters

  • 1 restraint

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.37 e Å−3

  • Δρmin = −0.33 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O5—H5⋯O4i 0.84 (3) 2.05 (3) 2.887 (3) 172 (4)
Symmetry code: (i) [-x+1, y+{\script{1\over 2}}, -z+{\script{3\over 2}}].

Data collection: APEX2 (Bruker, 2009[Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SAINT (Bruker, 2009[Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: X-SEED (Barbour, 2001[Barbour, L. J. (2001). J. Supramol. Chem. 1, 189-191.]); software used to prepare material for publication: publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).

Supporting information


Comment top

Kaempferia rotunda is one of the four Malaysian Kaempferia of the Zingiberaceae family; among the constitutents isolated is 3-deacetylcrotepoxide (Scheme I), which was first reported by Pancharoen et al. (1996). 3-Deacetylcrotepoxide (Scheme I) features a six-membered cyclohexane ring that adopts a twisted boat conformation owing to the presence of two adjacent epoxide attachements that tie up four of the six axial positions. The CH3CO2– and HO– substituents occupy regular equatorial positions as each is connected to a methine carbon atom (Fig. 1). However, the bond angles at the ring carbon connected to the C6H5CO2CH2– substituent deviate signifcantly from the idealized tetrahedral angles as the carbon atom is part of an epoxide ring [112.4 (2), 117.9 (2), 120.3 (3) °].

Related literature top

For the isolation of the compound from Kaempferia rotunda, see: Pancharoen et al. (1996).

Experimental top

Kaempferia rotunda rhizomes were purchased from a market in Kempas, Johor. The rhizomes were dried and then grounded. The grounded rhizomes were extracted with n-hexane (4.5 L), ethyl acetate (4.5 L) and methanol (4.5 L) in a soxhlet extractor for 16 h. The extracts were concentrated to give a dark brown semi-solid from the n-hexane extract (2.32 g), a dark brown oil from the ethyl acetate extract (6.80 g) and a dark brown viscous liquid from the methanol extract (15.27 g). The ethyl acetate extract (6.80 g) was fractionated by VLC (260 g, column size: 10 x 12 cm) by using petroleum ether, ether and ethyl acetate to afford four fractions, (0.02 g, 0.15 g, 2.70 g and 2.50 g. Evaporation of the solvent of the third fraction yielded 3-deacetylcrotepoxide (0.145 g, 2.13%) as colorless crystals.

The absolute configuration was assumed from that obtained from spectroscopic measurements (Pancharoen et al., 1996).

Refinement top

Carbon-bound H-atoms were placed in calculated positions (C—H 0.95–0.99 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2–15U(C).

The hydroxy H-atom was located in a difference Fourier map, and was refined isotropically with the O–H distance restrained to 0.84±0.01 Å.

1374 Friedel pairs were merged.

Structure description top

Kaempferia rotunda is one of the four Malaysian Kaempferia of the Zingiberaceae family; among the constitutents isolated is 3-deacetylcrotepoxide (Scheme I), which was first reported by Pancharoen et al. (1996). 3-Deacetylcrotepoxide (Scheme I) features a six-membered cyclohexane ring that adopts a twisted boat conformation owing to the presence of two adjacent epoxide attachements that tie up four of the six axial positions. The CH3CO2– and HO– substituents occupy regular equatorial positions as each is connected to a methine carbon atom (Fig. 1). However, the bond angles at the ring carbon connected to the C6H5CO2CH2– substituent deviate signifcantly from the idealized tetrahedral angles as the carbon atom is part of an epoxide ring [112.4 (2), 117.9 (2), 120.3 (3) °].

For the isolation of the compound from Kaempferia rotunda, see: Pancharoen et al. (1996).

Computing details top

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Figures top
[Figure 1] Fig. 1. Anisotropic displacement ellipsoid plot (Barbour, 2001) of C16H16O7 at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius.
[1R-(1α,2α,4α,5β,6α,7α)]-4-Benzoyloxymethyl-5,6-dihydroxy- 3,8-dioxatricyclo[5.1.0.02,4]octan-5-yl acetate top
Crystal data top
C16H16O7F(000) = 672
Mr = 320.29Dx = 1.445 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1788 reflections
a = 5.7451 (7) Åθ = 3.1–20.0°
b = 7.1746 (9) ŵ = 0.12 mm1
c = 35.708 (5) ÅT = 100 K
V = 1471.9 (3) Å3Prism, colorless
Z = 40.35 × 0.05 × 0.05 mm
Data collection top
Bruker SMART APEX
diffractometer
1730 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.073
Graphite monochromatorθmax = 27.5°, θmin = 1.1°
ω scansh = 77
14228 measured reflectionsk = 99
2011 independent reflectionsl = 4646
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.12 w = 1/[σ2(Fo2) + (0.0674P)2]
where P = (Fo2 + 2Fc2)/3
2011 reflections(Δ/σ)max = 0.001
213 parametersΔρmax = 0.37 e Å3
1 restraintΔρmin = 0.33 e Å3
Crystal data top
C16H16O7V = 1471.9 (3) Å3
Mr = 320.29Z = 4
Orthorhombic, P212121Mo Kα radiation
a = 5.7451 (7) ŵ = 0.12 mm1
b = 7.1746 (9) ÅT = 100 K
c = 35.708 (5) Å0.35 × 0.05 × 0.05 mm
Data collection top
Bruker SMART APEX
diffractometer
1730 reflections with I > 2σ(I)
14228 measured reflectionsRint = 0.073
2011 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0381 restraint
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.12Δρmax = 0.37 e Å3
2011 reflectionsΔρmin = 0.33 e Å3
213 parameters
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.4671 (3)0.4022 (3)0.89359 (5)0.0161 (4)
O20.1026 (4)0.3085 (3)0.88101 (5)0.0237 (5)
O30.5062 (3)0.3882 (3)0.78913 (5)0.0166 (4)
O40.1819 (4)0.5944 (3)0.74537 (5)0.0204 (5)
O50.4387 (4)0.9627 (3)0.80058 (6)0.0220 (5)
H50.541 (5)0.999 (5)0.7854 (8)0.032 (10)*
O60.6886 (3)0.7118 (3)0.84539 (5)0.0164 (4)
O70.5199 (4)0.8762 (3)0.89191 (6)0.0251 (5)
C10.1872 (5)0.4312 (4)0.94156 (7)0.0152 (6)
C20.3442 (5)0.5291 (4)0.96376 (8)0.0177 (6)
H20.48900.56840.95360.021*
C30.2893 (6)0.5693 (4)1.00069 (8)0.0208 (6)
H30.39630.63641.01580.025*
C40.0783 (6)0.5115 (4)1.01552 (8)0.0207 (6)
H40.04230.53641.04100.025*
C50.0805 (5)0.4172 (4)0.99317 (8)0.0203 (6)
H5A0.22560.37891.00340.024*
C60.0289 (5)0.3787 (4)0.95618 (8)0.0183 (6)
H60.13950.31690.94080.022*
C70.2420 (5)0.3749 (4)0.90243 (7)0.0163 (6)
C80.5387 (5)0.3349 (4)0.85715 (7)0.0162 (6)
H8A0.48200.20580.85370.019*
H8B0.71080.33290.85580.019*
C90.4444 (5)0.4570 (4)0.82602 (7)0.0143 (6)
C100.2631 (5)0.3857 (4)0.80053 (7)0.0167 (6)
H100.19420.26150.80670.020*
C110.1072 (5)0.5236 (4)0.78182 (7)0.0177 (6)
H110.06400.50670.78560.021*
C120.1917 (5)0.7166 (4)0.77788 (7)0.0173 (6)
H120.06990.81600.77900.021*
C130.4278 (6)0.7684 (4)0.79357 (7)0.0170 (6)
H130.55300.73160.77560.020*
C140.4611 (5)0.6656 (4)0.83081 (7)0.0141 (6)
H140.33940.70780.84900.017*
C150.6928 (6)0.8232 (4)0.87612 (7)0.0183 (6)
C160.9378 (6)0.8664 (5)0.88744 (9)0.0274 (7)
H16A0.93660.95300.90870.041*
H16B1.02020.92350.86630.041*
H16C1.01690.75100.89470.041*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0167 (10)0.0203 (11)0.0112 (9)0.0012 (9)0.0016 (8)0.0001 (8)
O20.0184 (11)0.0360 (13)0.0167 (10)0.0048 (10)0.0022 (9)0.0016 (9)
O30.0193 (10)0.0184 (10)0.0120 (9)0.0009 (9)0.0021 (7)0.0031 (8)
O40.0252 (11)0.0239 (11)0.0122 (9)0.0022 (10)0.0031 (8)0.0016 (8)
O50.0331 (13)0.0125 (10)0.0202 (10)0.0010 (10)0.0035 (10)0.0003 (8)
O60.0171 (10)0.0177 (10)0.0146 (9)0.0014 (9)0.0000 (8)0.0013 (8)
O70.0250 (12)0.0321 (13)0.0182 (10)0.0011 (11)0.0004 (9)0.0079 (9)
C10.0159 (13)0.0173 (14)0.0124 (12)0.0034 (12)0.0009 (11)0.0031 (10)
C20.0170 (14)0.0161 (14)0.0201 (13)0.0001 (12)0.0029 (11)0.0032 (11)
C30.0270 (16)0.0167 (14)0.0189 (14)0.0011 (13)0.0008 (12)0.0014 (11)
C40.0282 (17)0.0182 (15)0.0158 (13)0.0065 (13)0.0048 (13)0.0011 (11)
C50.0178 (15)0.0201 (16)0.0229 (15)0.0016 (12)0.0029 (12)0.0044 (11)
C60.0152 (14)0.0208 (14)0.0190 (14)0.0000 (13)0.0029 (11)0.0042 (12)
C70.0168 (14)0.0166 (14)0.0155 (13)0.0006 (12)0.0017 (11)0.0038 (11)
C80.0170 (14)0.0183 (14)0.0132 (12)0.0021 (12)0.0000 (11)0.0006 (10)
C90.0160 (13)0.0176 (14)0.0094 (12)0.0012 (12)0.0015 (10)0.0011 (10)
C100.0178 (14)0.0186 (14)0.0137 (12)0.0004 (12)0.0004 (11)0.0015 (11)
C110.0171 (14)0.0237 (15)0.0122 (12)0.0013 (12)0.0012 (11)0.0001 (11)
C120.0207 (14)0.0203 (14)0.0110 (12)0.0057 (13)0.0010 (11)0.0009 (11)
C130.0232 (15)0.0144 (14)0.0133 (12)0.0008 (12)0.0003 (12)0.0007 (10)
C140.0131 (13)0.0173 (14)0.0120 (12)0.0001 (11)0.0017 (10)0.0005 (10)
C150.0236 (15)0.0173 (15)0.0141 (13)0.0008 (13)0.0023 (12)0.0007 (11)
C160.0241 (16)0.0281 (17)0.0300 (16)0.0003 (15)0.0067 (14)0.0071 (14)
Geometric parameters (Å, º) top
O1—C71.345 (3)C5—C61.382 (4)
O1—C81.448 (3)C5—H5A0.9500
O2—C71.206 (3)C6—H60.9500
O3—C91.451 (3)C8—C91.515 (4)
O3—C101.455 (3)C8—H8A0.9900
O4—C121.455 (3)C8—H8B0.9900
O4—C111.462 (3)C9—C101.475 (4)
O5—C131.418 (3)C9—C141.509 (4)
O5—H50.84 (3)C10—C111.492 (4)
O6—C151.358 (3)C10—H101.0000
O6—C141.445 (3)C11—C121.474 (4)
O7—C151.204 (4)C11—H111.0000
C1—C21.391 (4)C12—C131.514 (4)
C1—C61.398 (4)C12—H121.0000
C1—C71.488 (4)C13—C141.532 (4)
C2—C31.386 (4)C13—H131.0000
C2—H20.9500C14—H141.0000
C3—C41.387 (4)C15—C161.497 (4)
C3—H30.9500C16—H16A0.9800
C4—C51.388 (4)C16—H16B0.9800
C4—H40.9500C16—H16C0.9800
C7—O1—C8115.8 (2)O3—C10—C11116.3 (2)
C9—O3—C1061.00 (17)C9—C10—C11118.1 (3)
C12—O4—C1160.70 (18)O3—C10—H10116.9
C13—O5—H5103 (3)C9—C10—H10116.9
C15—O6—C14116.2 (2)C11—C10—H10116.9
C2—C1—C6119.9 (3)O4—C11—C1259.43 (17)
C2—C1—C7122.3 (3)O4—C11—C10116.9 (2)
C6—C1—C7117.7 (3)C12—C11—C10117.9 (3)
C3—C2—C1120.0 (3)O4—C11—H11116.7
C3—C2—H2120.0C12—C11—H11116.7
C1—C2—H2120.0C10—C11—H11116.7
C2—C3—C4120.0 (3)O4—C12—C1159.86 (18)
C2—C3—H3120.0O4—C12—C13118.5 (2)
C4—C3—H3120.0C11—C12—C13119.3 (2)
C3—C4—C5120.1 (3)O4—C12—H12115.9
C3—C4—H4120.0C11—C12—H12115.9
C5—C4—H4120.0C13—C12—H12115.9
C6—C5—C4120.4 (3)O5—C13—C12110.3 (3)
C6—C5—H5A119.8O5—C13—C14108.3 (2)
C4—C5—H5A119.8C12—C13—C14108.3 (2)
C5—C6—C1119.6 (3)O5—C13—H13110.0
C5—C6—H6120.2C12—C13—H13110.0
C1—C6—H6120.2C14—C13—H13110.0
O2—C7—O1123.2 (3)O6—C14—C9109.0 (2)
O2—C7—C1124.2 (3)O6—C14—C13108.4 (2)
O1—C7—C1112.6 (2)C9—C14—C13111.8 (2)
O1—C8—C9111.4 (2)O6—C14—H14109.2
O1—C8—H8A109.3C9—C14—H14109.2
C9—C8—H8A109.3C13—C14—H14109.2
O1—C8—H8B109.3O7—C15—O6123.3 (3)
C9—C8—H8B109.3O7—C15—C16125.7 (3)
H8A—C8—H8B108.0O6—C15—C16110.9 (3)
O3—C9—C1059.64 (16)C15—C16—H16A109.5
O3—C9—C14115.2 (2)C15—C16—H16B109.5
C10—C9—C14117.3 (3)H16A—C16—H16B109.5
O3—C9—C8112.4 (2)C15—C16—H16C109.5
C10—C9—C8120.3 (3)H16A—C16—H16C109.5
C14—C9—C8117.9 (2)H16B—C16—H16C109.5
O3—C10—C959.37 (17)
C6—C1—C2—C32.1 (4)O3—C10—C11—O423.0 (4)
C7—C1—C2—C3176.5 (3)C9—C10—C11—O490.6 (3)
C1—C2—C3—C40.2 (4)O3—C10—C11—C1244.9 (3)
C2—C3—C4—C51.5 (4)C9—C10—C11—C1222.7 (4)
C3—C4—C5—C60.6 (4)C11—O4—C12—C13109.2 (3)
C4—C5—C6—C11.6 (4)C10—C11—C12—O4106.4 (3)
C2—C1—C6—C52.9 (4)O4—C11—C12—C13107.9 (3)
C7—C1—C6—C5175.7 (3)C10—C11—C12—C131.5 (4)
C8—O1—C7—O24.1 (4)O4—C12—C13—O5133.7 (2)
C8—O1—C7—C1174.5 (2)C11—C12—C13—O5156.8 (2)
C2—C1—C7—O2171.5 (3)O4—C12—C13—C14107.9 (3)
C6—C1—C7—O29.9 (4)C11—C12—C13—C1438.4 (3)
C2—C1—C7—O19.9 (4)C15—O6—C14—C9128.9 (2)
C6—C1—C7—O1168.7 (2)C15—O6—C14—C13109.2 (2)
C7—O1—C8—C972.9 (3)O3—C9—C14—O693.0 (3)
C10—O3—C9—C14108.2 (3)C10—C9—C14—O6160.3 (2)
C10—O3—C9—C8113.0 (3)C8—C9—C14—O643.4 (3)
O1—C8—C9—O3177.7 (2)O3—C9—C14—C1326.7 (4)
O1—C8—C9—C10110.8 (3)C10—C9—C14—C1340.6 (4)
O1—C8—C9—C1444.7 (4)C8—C9—C14—C13163.2 (2)
C9—O3—C10—C11108.5 (3)O5—C13—C14—O661.7 (3)
C14—C9—C10—O3104.6 (3)C12—C13—C14—O6178.7 (2)
C8—C9—C10—O399.8 (3)O5—C13—C14—C9178.2 (3)
O3—C9—C10—C11105.5 (3)C12—C13—C14—C958.6 (3)
C14—C9—C10—C110.9 (4)C14—O6—C15—O73.2 (4)
C8—C9—C10—C11154.7 (3)C14—O6—C15—C16177.8 (2)
C12—O4—C11—C10108.0 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O5—H5···O4i0.84 (3)2.05 (3)2.887 (3)172 (4)
Symmetry code: (i) x+1, y+1/2, z+3/2.

Experimental details

Crystal data
Chemical formulaC16H16O7
Mr320.29
Crystal system, space groupOrthorhombic, P212121
Temperature (K)100
a, b, c (Å)5.7451 (7), 7.1746 (9), 35.708 (5)
V3)1471.9 (3)
Z4
Radiation typeMo Kα
µ (mm1)0.12
Crystal size (mm)0.35 × 0.05 × 0.05
Data collection
DiffractometerBruker SMART APEX
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
14228, 2011, 1730
Rint0.073
(sin θ/λ)max1)0.650
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.038, 0.117, 1.12
No. of reflections2011
No. of parameters213
No. of restraints1
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.37, 0.33

Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O5—H5···O4i0.84 (3)2.05 (3)2.887 (3)172 (4)
Symmetry code: (i) x+1, y+1/2, z+3/2.
 

Acknowledgements

We thank the University of Malaya for supporting this study.

References

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First citationPancharoen, O., Tuntiwachwuttikul, P. & Taylor, W. C. (1996). Phytochemistry, 43, 305–308.  CrossRef CAS Web of Science Google Scholar
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