metal-organic compounds
Chloridodimethyl(thiosemicarbazide)tin(IV) chloride
aDepartamento de Quimíca, Universidad Nacional de Colombia, Sede Bogotá, Bogotá, Colombia
*Correspondence e-mail: kaokio@unal.edu.co
In the title salt, [Sn(CH3)2Cl(CH4N3S)]Cl, the SnIV atom is five-coordinated in a distorted trigonal-bipyramidal geometry with two methyl groups and one S atom in the equatorial plane, and one N atom and one Cl atom occupying the apical positions. In the crystal, molecules are linked by intermolecular N—H⋯S hydrogen bonds with set graph-motif C(4) along [010]. N—H⋯ Cl hydrogen bonds with graph-set motif D(2) and D33(10) link cations and anions.
Related literature
For a related structure, see: Delgado et al. (2009). For graph-set motifs, see: Bernstein et al. (1995). For the biological activity of organotin(IV) complexes, see: Davies & Smith (1982).
Experimental
Crystal data
|
Refinement
|
Data collection: COLLECT (Nonius, 1998); cell DENZO (Otwinowski & Minor, 1997); data reduction: DENZO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810038705/bx2306sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810038705/bx2306Isup2.hkl
Compound (I) was obtained by reacting dimethyltin (IV) dichloride (220 mg, 1 mmol) with thiosemicarbazide (68 mg, 0.75 mmol) in methanol under reflux for 3 h. Colourless crystals suitable for X-ray analysis were grown by slow solvent evaporation.
H atoms were positioned geometrically, with C—H, N—H distances of 0.96 and 0.86Å respectively, and constrained to ride on their parent atoms, with Uiso(H) = 1.5Ueq(C) and 1.2Ueq(N)
Organotin(IV) complexes have been extensively studied due to the diversity of structures that such compounds can form and to their potential biological activities as well as their wide industrial and agricultural applications (Davies & Smith, 1982). In the framework of our research for new organotin(IV) compounds (Delgado et al., 2009), we report here the
of the title compound (I). The is formed by one cation and one anion. The Sn atom is five-coordinate in a distorted trigonal–bipyramidal geometry. The distorted trigonal-bipyramidal has two methyl groups and one S atom in the equatorial plane, the N2 and Cl1 atom occupying the apical positions. In the crystal, molecules are linked by intermolecular N—H···S hydrogen bonds with set graph-motif C(4) along [010]. N—H··· Cl hydrogen bond linking cations and anions with set graph-motif D(2) and D33(10) , Table 1 and Fig.2. The C1-S and C1-N1 bond distances are quite shorter than the ones reported for C-S and C-N single bonds (1.755 (4), 1.366 (6)) (Delgado et al., 2009), suggesting the delocalization of the C=S double bond on the SCN moiety.For a related structure, see: Delgado et al. (2009). For set-graph-motifs, see: Bernstein, et al. (1995). For the biological activity of organotin(IV) complexes, see: Davies & Smith 1982.
Data collection: COLLECT (Nonius, 1998); cell
DENZO (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Sn(CH3)2Cl(CH4N3S)]Cl | F(000) = 596 |
Mr = 309.79 | Dx = 2.028 Mg m−3 |
Monoclinic, P2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yc | Cell parameters from 1915 reflections |
a = 13.4980 (12) Å | θ = 1.0–30.0° |
b = 6.2470 (5) Å | µ = 3.19 mm−1 |
c = 12.7160 (13) Å | T = 293 K |
β = 108.871 (10)° | Prism, colorless |
V = 1014.60 (16) Å3 | 0.13 × 0.10 × 0.09 mm |
Z = 4 |
Nonius KappaCCD diffractometer | 2915 independent reflections |
Radiation source: fine-focus sealed tube | 2475 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
π scans | θmax = 30.0°, θmin = 1.6° |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | h = −18→18 |
Tmin = 0.613, Tmax = 0.809 | k = −7→8 |
4452 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.103 | H-atom parameters constrained |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0482P)2 + 1.1794P] where P = (Fo2 + 2Fc2)/3 |
2915 reflections | (Δ/σ)max = 0.001 |
91 parameters | Δρmax = 1.04 e Å−3 |
0 restraints | Δρmin = −1.52 e Å−3 |
[Sn(CH3)2Cl(CH4N3S)]Cl | V = 1014.60 (16) Å3 |
Mr = 309.79 | Z = 4 |
Monoclinic, P2/c | Mo Kα radiation |
a = 13.4980 (12) Å | µ = 3.19 mm−1 |
b = 6.2470 (5) Å | T = 293 K |
c = 12.7160 (13) Å | 0.13 × 0.10 × 0.09 mm |
β = 108.871 (10)° |
Nonius KappaCCD diffractometer | 2915 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 2475 reflections with I > 2σ(I) |
Tmin = 0.613, Tmax = 0.809 | Rint = 0.020 |
4452 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.103 | H-atom parameters constrained |
S = 1.14 | Δρmax = 1.04 e Å−3 |
2915 reflections | Δρmin = −1.52 e Å−3 |
91 parameters |
Experimental. Absorption correction: multi-scan from symmetry-related measurements (SORTAV; Blessing, 1995) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Sn | 0.18008 (2) | 0.64590 (4) | 0.54686 (2) | 0.03327 (10) | |
Cl1 | 0.10951 (9) | 0.27486 (19) | 0.52290 (13) | 0.0570 (3) | |
Cl2 | 0.37205 (8) | 0.89418 (16) | 0.34229 (9) | 0.0384 (2) | |
S | 0.34762 (8) | 0.45496 (15) | 0.57559 (10) | 0.0394 (2) | |
N1 | 0.4153 (3) | 0.8592 (5) | 0.6156 (3) | 0.0304 (6) | |
H1 | 0.4647 | 0.9508 | 0.6420 | 0.036* | |
N2 | 0.3105 (2) | 0.9290 (5) | 0.5800 (3) | 0.0348 (7) | |
H2 | 0.2937 | 1.0621 | 0.5707 | 0.042* | |
N3 | 0.5392 (3) | 0.6073 (5) | 0.6316 (3) | 0.0371 (7) | |
H3AN | 0.5859 | 0.7063 | 0.6494 | 0.045* | |
H3BN | 0.5575 | 0.4762 | 0.6282 | 0.045* | |
C1 | 0.4390 (3) | 0.6566 (6) | 0.6093 (3) | 0.0291 (7) | |
C2 | 0.1509 (4) | 0.7230 (10) | 0.6955 (4) | 0.0548 (12) | |
H2A | 0.1548 | 0.8753 | 0.7060 | 0.082* | |
H2B | 0.2022 | 0.6549 | 0.7569 | 0.082* | |
H2C | 0.0823 | 0.6738 | 0.6913 | 0.082* | |
C3 | 0.1119 (4) | 0.7551 (9) | 0.3820 (4) | 0.0471 (10) | |
H3A | 0.0640 | 0.8695 | 0.3806 | 0.071* | |
H3B | 0.0749 | 0.6396 | 0.3362 | 0.071* | |
H3C | 0.1658 | 0.8060 | 0.3542 | 0.071* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Sn | 0.03237 (15) | 0.03147 (15) | 0.03651 (16) | −0.00300 (10) | 0.01187 (11) | −0.00248 (10) |
Cl1 | 0.0403 (5) | 0.0344 (5) | 0.0951 (9) | −0.0086 (5) | 0.0201 (6) | −0.0063 (6) |
Cl2 | 0.0369 (5) | 0.0377 (5) | 0.0413 (5) | −0.0039 (4) | 0.0138 (4) | 0.0036 (4) |
S | 0.0352 (5) | 0.0245 (4) | 0.0595 (6) | −0.0027 (4) | 0.0168 (4) | −0.0017 (4) |
N1 | 0.0299 (15) | 0.0266 (14) | 0.0342 (15) | −0.0046 (12) | 0.0097 (12) | −0.0039 (12) |
N2 | 0.0285 (15) | 0.0259 (14) | 0.0494 (19) | 0.0002 (13) | 0.0117 (13) | 0.0017 (14) |
N3 | 0.0316 (16) | 0.0367 (17) | 0.0444 (19) | −0.0017 (14) | 0.0141 (14) | −0.0064 (14) |
C1 | 0.0322 (18) | 0.0308 (17) | 0.0262 (15) | 0.0006 (14) | 0.0121 (13) | 0.0015 (13) |
C2 | 0.062 (3) | 0.067 (3) | 0.046 (3) | −0.017 (3) | 0.031 (2) | −0.010 (2) |
C3 | 0.042 (2) | 0.057 (3) | 0.038 (2) | −0.002 (2) | 0.0072 (17) | 0.002 (2) |
Sn—C2 | 2.107 (4) | N3—C1 | 1.325 (5) |
Sn—C3 | 2.112 (4) | N3—H3AN | 0.8600 |
Sn—N2 | 2.434 (3) | N3—H3BN | 0.8600 |
Sn—S | 2.4771 (11) | C2—H2A | 0.9600 |
Sn—Cl1 | 2.4870 (12) | C2—H2B | 0.9600 |
S—C1 | 1.718 (4) | C2—H2C | 0.9600 |
N1—C1 | 1.315 (5) | C3—H3A | 0.9600 |
N1—N2 | 1.408 (4) | C3—H3B | 0.9600 |
N1—H1 | 0.8600 | C3—H3C | 0.9600 |
N2—H2 | 0.8600 | ||
C2—Sn—C3 | 132.0 (2) | C1—N3—H3BN | 120.0 |
C2—Sn—N2 | 90.75 (17) | H3AN—N3—H3BN | 120.0 |
C3—Sn—N2 | 89.75 (16) | N1—C1—N3 | 117.6 (3) |
C2—Sn—S | 113.85 (17) | N1—C1—S | 123.5 (3) |
C3—Sn—S | 112.70 (14) | N3—C1—S | 118.9 (3) |
N2—Sn—S | 75.51 (8) | Sn—C2—H2A | 109.5 |
C2—Sn—Cl1 | 98.48 (16) | Sn—C2—H2B | 109.5 |
C3—Sn—Cl1 | 98.80 (15) | H2A—C2—H2B | 109.5 |
N2—Sn—Cl1 | 157.72 (8) | Sn—C2—H2C | 109.5 |
S—Sn—Cl1 | 82.21 (4) | H2A—C2—H2C | 109.5 |
C1—S—Sn | 103.38 (13) | H2B—C2—H2C | 109.5 |
C1—N1—N2 | 121.2 (3) | Sn—C3—H3A | 109.5 |
C1—N1—H1 | 119.4 | Sn—C3—H3B | 109.5 |
N2—N1—H1 | 119.4 | H3A—C3—H3B | 109.5 |
N1—N2—Sn | 115.2 (2) | Sn—C3—H3C | 109.5 |
N1—N2—H2 | 122.4 | H3A—C3—H3C | 109.5 |
Sn—N2—H2 | 122.4 | H3B—C3—H3C | 109.5 |
C1—N3—H3AN | 120.0 | ||
C2—Sn—S—C1 | −79.8 (2) | S—Sn—N2—N1 | −9.3 (2) |
C3—Sn—S—C1 | 88.0 (2) | Cl1—Sn—N2—N1 | −9.7 (4) |
N2—Sn—S—C1 | 4.48 (15) | N2—N1—C1—N3 | 172.0 (3) |
Cl1—Sn—S—C1 | −175.69 (14) | N2—N1—C1—S | −8.9 (5) |
C1—N1—N2—Sn | 13.1 (4) | Sn—S—C1—N1 | 0.0 (4) |
C2—Sn—N2—N1 | 105.2 (3) | Sn—S—C1—N3 | 179.2 (3) |
C3—Sn—N2—N1 | −122.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl2i | 0.86 | 2.3555 | 3.147 (4) | 153.17 |
N2—H2···Sii | 0.86 | 2.5549 | 3.327 (3) | 149.90 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | [Sn(CH3)2Cl(CH4N3S)]Cl |
Mr | 309.79 |
Crystal system, space group | Monoclinic, P2/c |
Temperature (K) | 293 |
a, b, c (Å) | 13.4980 (12), 6.2470 (5), 12.7160 (13) |
β (°) | 108.871 (10) |
V (Å3) | 1014.60 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.19 |
Crystal size (mm) | 0.13 × 0.10 × 0.09 |
Data collection | |
Diffractometer | Nonius KappaCCD |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.613, 0.809 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4452, 2915, 2475 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.103, 1.14 |
No. of reflections | 2915 |
No. of parameters | 91 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.04, −1.52 |
Computer programs: COLLECT (Nonius, 1998), DENZO (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl2i | 0.86 | 2.3555 | 3.147 (4) | 153.17 |
N2—H2···Sii | 0.86 | 2.5549 | 3.327 (3) | 149.90 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, y+1, z. |
Acknowledgements
The authors are grateful to Richard Welter for the X-ray analysis.
References
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Blessing, R. H. (1995). Acta Cryst. A51, 33–38. CrossRef CAS Web of Science IUCr Journals Google Scholar
Davies, A. G. & Smith, P. G. (1982). Comprehensive Organometallic Chemistry, edited by G. Wilkinson, F. Gordon, A. Stone & E.W. Abel, pp. 519–616. New York: Pergamon Press. Google Scholar
Delgado, D. J. A., Okio, C. K. Y. A. & Welter, R. (2009). Acta Cryst. E65, m426. Web of Science CSD CrossRef IUCr Journals Google Scholar
Nonius (1998). COLLECT. Nonius BV, Delft, The Netherlands. Google Scholar
Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Organotin(IV) complexes have been extensively studied due to the diversity of structures that such compounds can form and to their potential biological activities as well as their wide industrial and agricultural applications (Davies & Smith, 1982). In the framework of our research for new organotin(IV) compounds (Delgado et al., 2009), we report here the crystal structure of the title compound (I). The asymmetric unit is formed by one cation and one anion. The Sn atom is five-coordinate in a distorted trigonal–bipyramidal geometry. The distorted trigonal-bipyramidal coordination polyhedron has two methyl groups and one S atom in the equatorial plane, the N2 and Cl1 atom occupying the apical positions. In the crystal, molecules are linked by intermolecular N—H···S hydrogen bonds with set graph-motif C(4) along [010]. N—H··· Cl hydrogen bond linking cations and anions with set graph-motif D(2) and D33(10) , Table 1 and Fig.2. The C1-S and C1-N1 bond distances are quite shorter than the ones reported for C-S and C-N single bonds (1.755 (4), 1.366 (6)) (Delgado et al., 2009), suggesting the delocalization of the C=S double bond on the SCN moiety.