organic compounds
Benzoic acid–2-{(E)-[(E)-2-(2-pyridylmethylidene)hydrazin-1-ylidene]methyl}pyridine (2/1)
aDepartment of Chemistry, The University of Texas at San Antonio, One UTSA Circle, San Antonio, Texas 78249-0698, USA, and bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
The 12H10N4·2C7H6O2, comprises a single molecule of benzoic acid and one half-molecule of 2-pyridinealdazine situated about a centre of inversion. The carboxyl group is coplanar with the benzene ring to which it is connected [O—C—C—C = −172.47 (12)°] and similarly, the 2-pyridinealdazine molecule is planar (r.m.s. deviation of the 16 non-H atoms = 0.017 Å). In the crystal, molecules are connected into a non-planar three-molecule aggregate [dihedral angle between the benzene and pyridyl ring connected by the hydrogen bond = 61.30 (7)°] with a twisted Z-shape. Layers of 2-pyridinealdazine molecules in the ab plane are sandwiched by benzoic acid molecules being connected by O—H⋯N and C—H⋯O interactions, the latter involving the carbonyl O atom so that each benzoic acid molecule links three different 2-pyridinealdazine molecules. Interdigitated layers stack along the c axis.
of the title cocrystal, CRelated literature
For related studies on n-pyridinealdazines, see: Broker et al. (2008); Arman et al. (2010a,b).
formation involving the isomericExperimental
Crystal data
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Refinement
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Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536810040651/hg2725sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810040651/hg2725Isup2.hkl
Yellow crystals of (I) were isolated from the 2/1 co-crystallization of benzoic acid (Sigma Aldrich, 0.24 mmol) and 2-[(E)-[(E)-2-(pyridin-2-ylmethylidene)hydrazin-1-ylidene]methyl]pyridine (Sigma Aldrich, 0.12 mmol) in ethanol, m. pt. 351–353 K.
IR assignment (cm-1): 2600 (br) ν(O—H); 1691 ν(C=O); 1627 ν(C═N); 1469, 1451, 1416 ν(C–C(aromatic)); 1627 ν(C—N); 777 δ(C—H).
C-bound H-atoms were placed in calculated positions (C–H 0.95–0.99 Å) and were included in the 1 1).
in the riding model approximation with Uiso(H) set to 1.2Ueq(C). The O-bound H-atom was located in a difference Fourier map and was refined with a distance restraint of O–H 0.84±0.01 Å, and with Uiso(H) = 1.5Ueq(O). In the final a low angle reflection evidently effected by the beam stop was omitted, i.e. (0Co-crystallization experiments with the isomeric n-pyridinealdazines have led to the characterization of several co-crystals (Broker et al., 2008; Arman et al., 2010a; Arman et al., 2010b), and in continuation of these studies, the co-crystallization of benzoic acid and 2-pyridinealdazine was investigated. This lead to the isolation of the title 2/1
(I).The
in (I) comprises a molecule of benzoic acid, Fig. 1, and half a molecule of 2-pyridinealdazine, with the latter disposed about a centre of inversion, Fig. 2. The constituents of (I) are connected by O—H···N hydrogen bonds, Table 1, to generate a centrosymmetric three molecule aggregate, Fig. 3. The benzoic acid molecule is planar as seen in the value of the O1—C1—C2—C3 torsion angle of -172.47 (12) °. Similarly, the 2-pyridinealdazine molecule is planar with the r.m.s. deviation of the 16 non-hydrogen atoms being 0.017 Å. However, the three molecule aggregate is not planar as the benzene ring forms a dihedral angle of 61.30 (7) ° with the pyridyl ring to which it is hydrogen bonded. Overall, when viewed normal to the plane through 2-pyridinealdazine, the aggregate has the shape of a twisted letter Z.In the crystal packing, the 2-pyridinealdazine molecules pack in the ab plane with the benzoic acid molecules sandwiching these, Fig. 4. The connections are mediated by the aforementioned O—H···N hydrogen bond as well as C—H···O interactions formed by the carbonyl-O atom; each benzoic acid molecule links three distinct 2-pyridinealdazine molecules. Inter-digitated layers stack along the c axis.
For related studies on
formation involving the isomeric n-pyridinealdazines, see: Broker et al. (2008); Arman et al. (2010a,b).Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005); cell
CrystalClear (Molecular Structure Corporation & Rigaku, 2005); data reduction: CrystalClear (Molecular Structure Corporation & Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C12H10N4·2C7H6O2 | Z = 1 |
Mr = 454.48 | F(000) = 238 |
Triclinic, P1 | Dx = 1.357 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.4509 (7) Å | Cell parameters from 2619 reflections |
b = 11.3635 (17) Å | θ = 2.1–40.2° |
c = 12.0612 (17) Å | µ = 0.09 mm−1 |
α = 108.985 (6)° | T = 98 K |
β = 99.830 (9)° | Block, yellow |
γ = 97.849 (10)° | 0.40 × 0.29 × 0.12 mm |
V = 556.16 (14) Å3 |
Rigaku AFC12K/SATURN724 diffractometer | 1935 independent reflections |
Radiation source: fine-focus sealed tube | 1811 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scans | θmax = 25.0°, θmin = 3.1° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −5→4 |
Tmin = 0.759, Tmax = 1.000 | k = −13→13 |
2790 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0744P)2 + 0.1759P] where P = (Fo2 + 2Fc2)/3 |
1935 reflections | (Δ/σ)max < 0.001 |
158 parameters | Δρmax = 0.20 e Å−3 |
1 restraint | Δρmin = −0.23 e Å−3 |
C12H10N4·2C7H6O2 | γ = 97.849 (10)° |
Mr = 454.48 | V = 556.16 (14) Å3 |
Triclinic, P1 | Z = 1 |
a = 4.4509 (7) Å | Mo Kα radiation |
b = 11.3635 (17) Å | µ = 0.09 mm−1 |
c = 12.0612 (17) Å | T = 98 K |
α = 108.985 (6)° | 0.40 × 0.29 × 0.12 mm |
β = 99.830 (9)° |
Rigaku AFC12K/SATURN724 diffractometer | 1935 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 1811 reflections with I > 2σ(I) |
Tmin = 0.759, Tmax = 1.000 | Rint = 0.022 |
2790 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 1 restraint |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.20 e Å−3 |
1935 reflections | Δρmin = −0.23 e Å−3 |
158 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.6343 (3) | 0.67141 (10) | 0.18059 (9) | 0.0287 (3) | |
H1o | 0.584 (5) | 0.692 (2) | 0.2479 (12) | 0.050 (6)* | |
O2 | 0.7598 (3) | 0.88248 (10) | 0.23009 (9) | 0.0315 (3) | |
C1 | 0.7523 (3) | 0.77587 (13) | 0.16270 (12) | 0.0235 (3) | |
C2 | 0.8828 (3) | 0.74881 (14) | 0.05272 (12) | 0.0227 (3) | |
C3 | 1.0455 (3) | 0.85068 (14) | 0.03269 (13) | 0.0278 (4) | |
H3 | 1.0702 | 0.9349 | 0.0878 | 0.033* | |
C4 | 1.1716 (4) | 0.82926 (15) | −0.06766 (14) | 0.0311 (4) | |
H4 | 1.2846 | 0.8987 | −0.0809 | 0.037* | |
C5 | 1.1331 (4) | 0.70640 (15) | −0.14890 (13) | 0.0289 (4) | |
H5 | 1.2192 | 0.6919 | −0.2178 | 0.035* | |
C6 | 0.9695 (4) | 0.60477 (15) | −0.12974 (13) | 0.0294 (4) | |
H6 | 0.9428 | 0.5208 | −0.1856 | 0.035* | |
C7 | 0.8444 (3) | 0.62603 (14) | −0.02863 (13) | 0.0263 (3) | |
H7 | 0.7326 | 0.5564 | −0.0152 | 0.032* | |
N1 | 0.4834 (3) | 0.73022 (11) | 0.39929 (10) | 0.0214 (3) | |
N2 | 0.9261 (3) | 0.54922 (10) | 0.52702 (10) | 0.0211 (3) | |
C8 | 0.6169 (3) | 0.69350 (12) | 0.48783 (12) | 0.0190 (3) | |
C9 | 0.6033 (3) | 0.75148 (13) | 0.60760 (12) | 0.0219 (3) | |
H9 | 0.7002 | 0.7236 | 0.6683 | 0.026* | |
C10 | 0.4469 (3) | 0.85009 (13) | 0.63643 (12) | 0.0233 (3) | |
H10 | 0.4365 | 0.8918 | 0.7175 | 0.028* | |
C11 | 0.3052 (3) | 0.88738 (13) | 0.54546 (13) | 0.0231 (3) | |
H11 | 0.1932 | 0.9541 | 0.5627 | 0.028* | |
C12 | 0.3304 (3) | 0.82529 (13) | 0.42883 (13) | 0.0230 (3) | |
H12 | 0.2344 | 0.8515 | 0.3668 | 0.028* | |
C13 | 0.7833 (3) | 0.58938 (13) | 0.45006 (12) | 0.0209 (3) | |
H13 | 0.7846 | 0.5516 | 0.3674 | 0.025* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0405 (6) | 0.0251 (6) | 0.0230 (5) | 0.0084 (5) | 0.0124 (5) | 0.0085 (4) |
O2 | 0.0457 (7) | 0.0254 (6) | 0.0247 (6) | 0.0126 (5) | 0.0110 (5) | 0.0070 (5) |
C1 | 0.0261 (7) | 0.0244 (7) | 0.0208 (7) | 0.0084 (6) | 0.0028 (5) | 0.0093 (6) |
C2 | 0.0231 (7) | 0.0261 (7) | 0.0200 (7) | 0.0083 (6) | 0.0018 (5) | 0.0098 (6) |
C3 | 0.0333 (8) | 0.0248 (8) | 0.0231 (7) | 0.0064 (6) | 0.0035 (6) | 0.0070 (6) |
C4 | 0.0336 (8) | 0.0315 (8) | 0.0299 (8) | 0.0025 (7) | 0.0065 (6) | 0.0151 (7) |
C5 | 0.0302 (8) | 0.0372 (8) | 0.0238 (7) | 0.0118 (6) | 0.0087 (6) | 0.0135 (6) |
C6 | 0.0349 (8) | 0.0277 (8) | 0.0262 (8) | 0.0103 (6) | 0.0091 (6) | 0.0075 (6) |
C7 | 0.0314 (8) | 0.0236 (7) | 0.0259 (7) | 0.0084 (6) | 0.0081 (6) | 0.0098 (6) |
N1 | 0.0212 (6) | 0.0202 (6) | 0.0235 (6) | 0.0037 (5) | 0.0055 (5) | 0.0088 (5) |
N2 | 0.0200 (6) | 0.0203 (6) | 0.0242 (6) | 0.0063 (5) | 0.0077 (5) | 0.0073 (5) |
C8 | 0.0165 (6) | 0.0182 (6) | 0.0232 (7) | 0.0018 (5) | 0.0060 (5) | 0.0087 (5) |
C9 | 0.0205 (7) | 0.0234 (7) | 0.0231 (7) | 0.0037 (5) | 0.0059 (5) | 0.0100 (6) |
C10 | 0.0251 (7) | 0.0223 (7) | 0.0230 (7) | 0.0036 (6) | 0.0100 (6) | 0.0069 (6) |
C11 | 0.0214 (7) | 0.0183 (7) | 0.0312 (8) | 0.0052 (5) | 0.0092 (6) | 0.0091 (6) |
C12 | 0.0220 (7) | 0.0217 (7) | 0.0272 (7) | 0.0050 (5) | 0.0040 (5) | 0.0117 (6) |
C13 | 0.0194 (6) | 0.0204 (7) | 0.0237 (7) | 0.0036 (5) | 0.0076 (5) | 0.0078 (6) |
O1—C1 | 1.3292 (18) | N1—C12 | 1.3381 (18) |
O1—H1o | 0.846 (9) | N1—C8 | 1.3449 (18) |
O2—C1 | 1.2117 (17) | N2—C13 | 1.2757 (18) |
C1—C2 | 1.496 (2) | N2—N2i | 1.408 (2) |
C2—C7 | 1.388 (2) | C8—C9 | 1.3949 (19) |
C2—C3 | 1.391 (2) | C8—C13 | 1.4698 (18) |
C3—C4 | 1.384 (2) | C9—C10 | 1.380 (2) |
C3—H3 | 0.9500 | C9—H9 | 0.9500 |
C4—C5 | 1.388 (2) | C10—C11 | 1.386 (2) |
C4—H4 | 0.9500 | C10—H10 | 0.9500 |
C5—C6 | 1.385 (2) | C11—C12 | 1.385 (2) |
C5—H5 | 0.9500 | C11—H11 | 0.9500 |
C6—C7 | 1.390 (2) | C12—H12 | 0.9500 |
C6—H6 | 0.9500 | C13—H13 | 0.9500 |
C7—H7 | 0.9500 | ||
C1—O1—H1o | 109.1 (15) | C6—C7—H7 | 120.0 |
O2—C1—O1 | 123.44 (13) | C12—N1—C8 | 117.83 (12) |
O2—C1—C2 | 123.29 (14) | C13—N2—N2i | 111.87 (13) |
O1—C1—C2 | 113.26 (12) | N1—C8—C9 | 122.45 (12) |
C7—C2—C3 | 119.91 (13) | N1—C8—C13 | 115.34 (12) |
C7—C2—C1 | 121.78 (14) | C9—C8—C13 | 122.20 (12) |
C3—C2—C1 | 118.31 (13) | C10—C9—C8 | 118.85 (13) |
C4—C3—C2 | 119.96 (14) | C10—C9—H9 | 120.6 |
C4—C3—H3 | 120.0 | C8—C9—H9 | 120.6 |
C2—C3—H3 | 120.0 | C9—C10—C11 | 119.04 (12) |
C3—C4—C5 | 120.05 (14) | C9—C10—H10 | 120.5 |
C3—C4—H4 | 120.0 | C11—C10—H10 | 120.5 |
C5—C4—H4 | 120.0 | C10—C11—C12 | 118.57 (12) |
C6—C5—C4 | 120.19 (14) | C10—C11—H11 | 120.7 |
C6—C5—H5 | 119.9 | C12—C11—H11 | 120.7 |
C4—C5—H5 | 119.9 | N1—C12—C11 | 123.25 (13) |
C5—C6—C7 | 119.84 (14) | N1—C12—H12 | 118.4 |
C5—C6—H6 | 120.1 | C11—C12—H12 | 118.4 |
C7—C6—H6 | 120.1 | N2—C13—C8 | 120.75 (12) |
C2—C7—C6 | 120.06 (14) | N2—C13—H13 | 119.6 |
C2—C7—H7 | 120.0 | C8—C13—H13 | 119.6 |
O2—C1—C2—C7 | −173.81 (14) | C12—N1—C8—C9 | −0.65 (19) |
O1—C1—C2—C7 | 7.72 (19) | C12—N1—C8—C13 | −179.57 (11) |
O2—C1—C2—C3 | 6.0 (2) | N1—C8—C9—C10 | 0.1 (2) |
O1—C1—C2—C3 | −172.47 (12) | C13—C8—C9—C10 | 178.93 (12) |
C7—C2—C3—C4 | −0.7 (2) | C8—C9—C10—C11 | 0.8 (2) |
C1—C2—C3—C4 | 179.52 (13) | C9—C10—C11—C12 | −1.0 (2) |
C2—C3—C4—C5 | 0.6 (2) | C8—N1—C12—C11 | 0.4 (2) |
C3—C4—C5—C6 | −0.2 (2) | C10—C11—C12—N1 | 0.5 (2) |
C4—C5—C6—C7 | −0.2 (2) | N2i—N2—C13—C8 | −179.13 (12) |
C3—C2—C7—C6 | 0.3 (2) | N1—C8—C13—N2 | 178.03 (12) |
C1—C2—C7—C6 | −179.93 (13) | C9—C8—C13—N2 | −0.9 (2) |
C5—C6—C7—C2 | 0.2 (2) |
Symmetry code: (i) −x+2, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1o···N1 | 0.85 (2) | 1.88 (2) | 2.7269 (16) | 177 (2) |
C11—H11···O2ii | 0.95 | 2.54 | 3.1811 (19) | 125 |
C12—H12···O2iii | 0.95 | 2.59 | 3.4647 (19) | 154 |
Symmetry codes: (ii) −x+1, −y+2, −z+1; (iii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C12H10N4·2C7H6O2 |
Mr | 454.48 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 98 |
a, b, c (Å) | 4.4509 (7), 11.3635 (17), 12.0612 (17) |
α, β, γ (°) | 108.985 (6), 99.830 (9), 97.849 (10) |
V (Å3) | 556.16 (14) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.29 × 0.12 |
Data collection | |
Diffractometer | Rigaku AFC12K/SATURN724 |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.759, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2790, 1935, 1811 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.117, 1.00 |
No. of reflections | 1935 |
No. of parameters | 158 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.23 |
Computer programs: CrystalClear (Molecular Structure Corporation & Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1o···N1 | 0.847 (16) | 1.881 (16) | 2.7269 (16) | 177 (2) |
C11—H11···O2i | 0.95 | 2.54 | 3.1811 (19) | 125 |
C12—H12···O2ii | 0.95 | 2.59 | 3.4647 (19) | 154 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x−1, y, z. |
References
Arman, H. D., Kaulgud, T. & Tiekink, E. R. T. (2010a). Acta Cryst. E66, o2356. Web of Science CSD CrossRef IUCr Journals Google Scholar
Arman, H. D., Kaulgud, T. & Tiekink, E. R. T. (2010b). Acta Cryst. E66, o2629. Web of Science CSD CrossRef IUCr Journals Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Broker, G. A., Bettens, R. P. A. & Tiekink, E. R. T. (2008). CrystEngComm, 10, 879–887. Web of Science CSD CrossRef CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
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Molecular Structure Corporation & Rigaku (2005). CrystalClear. MSC, The Woodlands, Texas, USA, and Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Co-crystallization experiments with the isomeric n-pyridinealdazines have led to the characterization of several co-crystals (Broker et al., 2008; Arman et al., 2010a; Arman et al., 2010b), and in continuation of these studies, the co-crystallization of benzoic acid and 2-pyridinealdazine was investigated. This lead to the isolation of the title 2/1 co-crystal, (I).
The asymmetric unit in (I) comprises a molecule of benzoic acid, Fig. 1, and half a molecule of 2-pyridinealdazine, with the latter disposed about a centre of inversion, Fig. 2. The constituents of (I) are connected by O—H···N hydrogen bonds, Table 1, to generate a centrosymmetric three molecule aggregate, Fig. 3. The benzoic acid molecule is planar as seen in the value of the O1—C1—C2—C3 torsion angle of -172.47 (12) °. Similarly, the 2-pyridinealdazine molecule is planar with the r.m.s. deviation of the 16 non-hydrogen atoms being 0.017 Å. However, the three molecule aggregate is not planar as the benzene ring forms a dihedral angle of 61.30 (7) ° with the pyridyl ring to which it is hydrogen bonded. Overall, when viewed normal to the plane through 2-pyridinealdazine, the aggregate has the shape of a twisted letter Z.
In the crystal packing, the 2-pyridinealdazine molecules pack in the ab plane with the benzoic acid molecules sandwiching these, Fig. 4. The connections are mediated by the aforementioned O—H···N hydrogen bond as well as C—H···O interactions formed by the carbonyl-O atom; each benzoic acid molecule links three distinct 2-pyridinealdazine molecules. Inter-digitated layers stack along the c axis.