organic compounds
N-Carbamothioylamino-7-oxabicyclo[2.2.1]hept-5-ene-2,3-dicarboximide
aDepartment of Chemistry and Chemical Engineering, Weifang University, Weifang 261061, People's Republic of China
*Correspondence e-mail: ljwfu@163.com
The title compound, C9H9N3O3S, comprises a of chiral molecules containing four stereogenic centres. The cyclohexane ring tends towards a boat conformation, while the tetrahydrofuran ring and the dihydrofuran ring adopt envelope conformations. The dihedral angle between the thiosemicarbazide fragment and the fused-ring system is 77.20 (10)°. The is stabilized by two intermolecular N—H⋯O hydrogen bonds.
Related literature
For the use of 7-oxa-bicyclo[2,2,1]hept-5-ene-2,3-dicarboxylic anhydride in clinical practice, see: Deng & Hu (2007). For the pharmacological activity of its derivatives, see: Hart et al. (2004). For bond lengths and angles in related structures, see: Goh et al. (2008).
Experimental
Crystal data
|
Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S160053681004835X/bx2331sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681004835X/bx2331Isup2.hkl
A mixture of exo-7-oxa-bicyclo[2,2,1]hept-5-ene-2,3-dicarboxylic anhydride (0.332 g, 2 mmol) and thiocarbanide (0.182 g, 2 mmol) in methanol (5 ml) was stirred for 5 h at room temperature, and then refluxed for 1 h. After cooling the precipitate was filtered and dried, the title compound was obtained. The crude product of 20 mg was dissolved in methanol of 10 ml. The solution was filtered to remove impurities, and then the filtrate was left for crystallization at room temperature. The single-crystal suitable for X-ray determination was obtained by evaporation from the methanol solution after 5 d.
H atoms were initially located from difference maps and then refined in a riding model with C—H = 0.93–0.96 Å and Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
7-Oxa-bicyclo[2,2,1]hept-5-ene-2,3-dicarboxylic anhydride has been widely employed in clinical practice, as it is less toxic and much easier to be synthesized [Deng et al., 2007]. Its derivatives are also pharmacologically active [Hart et al., 2004]. We report here the
of the title compound, (I) which comprises a of chiral molecules containing four stereogenic centres. The cyclohexane ring tends towards a boat conformation, the tetrahydrofuran ring and the dihydrofuran ring adopt envelope conformations (Fig. 1). The bond lengths and bond angles are normal range and comparable to those in the similar compound [Goh, et al., 2008] as representative example. The dihedral angle between the thiosemicarbazide fragment and fused-ring system is 77.20 (10)°. The is stabilized by two intermolecular N—H···O and one intramolecular N—H···N hydrogen bonds (Table 1, Fig. 2).For the use of 7-oxa-bicyclo[2,2,1]hept-5-ene-2,3-dicarboxylic anhydride in clinical practice, see: Deng & Hu (2007). For the pharmacological activity of its derivatives, see: Hart et al. (2004). For bond lengths and angles in related structures, see: Goh et al. (2008).
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C9H9N3O3S | F(000) = 496 |
Mr = 239.25 | Dx = 1.564 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 2624 reflections |
a = 8.3978 (8) Å | θ = 2.7–26.3° |
b = 8.9032 (9) Å | µ = 0.31 mm−1 |
c = 13.5930 (14) Å | T = 298 K |
V = 1016.31 (18) Å3 | Block, light yellow |
Z = 4 | 0.45 × 0.43 × 0.40 mm |
Bruker SMART CCD area-detector diffractometer | 1791 independent reflections |
Radiation source: fine-focus sealed tube | 1632 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
phi and ω scans | θmax = 25.0°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −9→9 |
Tmin = 0.872, Tmax = 0.885 | k = −10→10 |
5015 measured reflections | l = −16→11 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
wR(F2) = 0.071 | w = 1/[σ2(Fo2) + (0.0346P)2 + 0.1693P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
1791 reflections | Δρmax = 0.14 e Å−3 |
145 parameters | Δρmin = −0.16 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 728 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.01 (9) |
C9H9N3O3S | V = 1016.31 (18) Å3 |
Mr = 239.25 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.3978 (8) Å | µ = 0.31 mm−1 |
b = 8.9032 (9) Å | T = 298 K |
c = 13.5930 (14) Å | 0.45 × 0.43 × 0.40 mm |
Bruker SMART CCD area-detector diffractometer | 1791 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 1632 reflections with I > 2σ(I) |
Tmin = 0.872, Tmax = 0.885 | Rint = 0.023 |
5015 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
wR(F2) = 0.071 | Δρmax = 0.14 e Å−3 |
S = 1.07 | Δρmin = −0.16 e Å−3 |
1791 reflections | Absolute structure: Flack (1983), 728 Friedel pairs |
145 parameters | Absolute structure parameter: 0.01 (9) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.97059 (7) | 0.24096 (7) | 0.78384 (4) | 0.04347 (17) | |
N1 | 0.5849 (2) | 0.39754 (19) | 0.65892 (11) | 0.0314 (4) | |
N2 | 0.7287 (2) | 0.3264 (2) | 0.67804 (13) | 0.0407 (5) | |
H2 | 0.7712 | 0.2722 | 0.6327 | 0.049* | |
N3 | 0.7384 (2) | 0.4298 (2) | 0.83195 (13) | 0.0447 (5) | |
H3A | 0.6516 | 0.4766 | 0.8184 | 0.054* | |
H3B | 0.7826 | 0.4413 | 0.8885 | 0.054* | |
O1 | 0.68615 (19) | 0.5596 (2) | 0.54443 (11) | 0.0466 (4) | |
O2 | 0.4254 (2) | 0.22814 (19) | 0.73858 (12) | 0.0529 (5) | |
O3 | 0.32651 (18) | 0.33700 (17) | 0.48808 (10) | 0.0362 (4) | |
C1 | 0.5731 (3) | 0.5099 (2) | 0.58861 (14) | 0.0321 (5) | |
C2 | 0.4001 (2) | 0.5466 (2) | 0.57606 (14) | 0.0306 (5) | |
H2A | 0.3754 | 0.6517 | 0.5911 | 0.037* | |
C3 | 0.3110 (2) | 0.4351 (2) | 0.64312 (15) | 0.0322 (5) | |
H3 | 0.2452 | 0.4855 | 0.6927 | 0.039* | |
C4 | 0.4385 (3) | 0.3383 (2) | 0.68800 (14) | 0.0334 (5) | |
C5 | 0.8043 (3) | 0.3395 (2) | 0.76542 (14) | 0.0298 (5) | |
C6 | 0.3396 (3) | 0.4970 (3) | 0.47264 (15) | 0.0357 (5) | |
H6 | 0.4065 | 0.5276 | 0.4171 | 0.043* | |
C7 | 0.1677 (3) | 0.5434 (3) | 0.46640 (18) | 0.0457 (6) | |
H7 | 0.1252 | 0.6207 | 0.4287 | 0.055* | |
C8 | 0.0896 (3) | 0.4521 (3) | 0.52523 (17) | 0.0450 (6) | |
H8 | −0.0191 | 0.4531 | 0.5382 | 0.054* | |
C9 | 0.2106 (3) | 0.3459 (3) | 0.56743 (15) | 0.0368 (5) | |
H9 | 0.1687 | 0.2495 | 0.5906 | 0.044* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0357 (3) | 0.0469 (3) | 0.0479 (3) | 0.0058 (3) | −0.0064 (3) | 0.0046 (3) |
N1 | 0.0315 (9) | 0.0367 (10) | 0.0261 (8) | 0.0045 (8) | −0.0032 (8) | −0.0030 (8) |
N2 | 0.0382 (10) | 0.0540 (12) | 0.0299 (10) | 0.0176 (9) | −0.0048 (8) | −0.0105 (8) |
N3 | 0.0447 (11) | 0.0553 (12) | 0.0342 (10) | 0.0059 (10) | −0.0116 (9) | −0.0121 (9) |
O1 | 0.0357 (9) | 0.0642 (12) | 0.0399 (9) | −0.0093 (8) | 0.0035 (8) | 0.0077 (8) |
O2 | 0.0607 (10) | 0.0508 (10) | 0.0472 (9) | −0.0104 (9) | −0.0100 (8) | 0.0191 (9) |
O3 | 0.0405 (8) | 0.0351 (8) | 0.0330 (8) | 0.0003 (7) | −0.0017 (7) | −0.0079 (7) |
C1 | 0.0368 (12) | 0.0350 (11) | 0.0245 (10) | −0.0046 (10) | −0.0007 (9) | −0.0048 (9) |
C2 | 0.0333 (11) | 0.0257 (11) | 0.0329 (11) | 0.0010 (9) | −0.0030 (10) | −0.0008 (9) |
C3 | 0.0324 (11) | 0.0354 (12) | 0.0287 (10) | 0.0009 (9) | 0.0042 (9) | −0.0030 (9) |
C4 | 0.0411 (13) | 0.0348 (12) | 0.0243 (10) | −0.0023 (10) | −0.0010 (9) | −0.0046 (9) |
C5 | 0.0330 (11) | 0.0283 (10) | 0.0282 (11) | −0.0068 (9) | 0.0014 (9) | 0.0015 (9) |
C6 | 0.0360 (11) | 0.0411 (13) | 0.0300 (11) | −0.0061 (11) | −0.0019 (9) | 0.0050 (10) |
C7 | 0.0449 (14) | 0.0464 (15) | 0.0459 (13) | 0.0038 (12) | −0.0185 (12) | 0.0023 (11) |
C8 | 0.0292 (11) | 0.0590 (17) | 0.0469 (13) | −0.0001 (11) | −0.0064 (11) | −0.0078 (12) |
C9 | 0.0352 (12) | 0.0405 (12) | 0.0345 (12) | −0.0095 (10) | 0.0001 (10) | 0.0027 (10) |
S1—C5 | 1.668 (2) | C2—C3 | 1.542 (3) |
N1—C1 | 1.387 (3) | C2—C6 | 1.558 (3) |
N1—N2 | 1.388 (2) | C2—H2A | 0.9800 |
N1—C4 | 1.395 (3) | C3—C4 | 1.504 (3) |
N2—C5 | 1.352 (3) | C3—C9 | 1.549 (3) |
N2—H2 | 0.8600 | C3—H3 | 0.9800 |
N3—C5 | 1.331 (3) | C6—C7 | 1.505 (3) |
N3—H3A | 0.8600 | C6—H6 | 0.9800 |
N3—H3B | 0.8600 | C7—C8 | 1.315 (3) |
O1—C1 | 1.207 (2) | C7—H7 | 0.9300 |
O2—C4 | 1.203 (2) | C8—C9 | 1.502 (3) |
O3—C6 | 1.444 (3) | C8—H8 | 0.9300 |
O3—C9 | 1.455 (3) | C9—H9 | 0.9800 |
C1—C2 | 1.499 (3) | ||
C1—N1—N2 | 121.34 (18) | O2—C4—N1 | 123.4 (2) |
C1—N1—C4 | 113.89 (17) | O2—C4—C3 | 129.3 (2) |
N2—N1—C4 | 122.77 (17) | N1—C4—C3 | 107.21 (16) |
C5—N2—N1 | 122.28 (18) | N3—C5—N2 | 116.96 (19) |
C5—N2—H2 | 118.9 | N3—C5—S1 | 124.34 (16) |
N1—N2—H2 | 118.9 | N2—C5—S1 | 118.69 (16) |
C5—N3—H3A | 120.0 | O3—C6—C7 | 101.85 (18) |
C5—N3—H3B | 120.0 | O3—C6—C2 | 99.98 (16) |
H3A—N3—H3B | 120.0 | C7—C6—C2 | 106.61 (17) |
C6—O3—C9 | 96.03 (15) | O3—C6—H6 | 115.5 |
O1—C1—N1 | 123.4 (2) | C7—C6—H6 | 115.5 |
O1—C1—C2 | 128.8 (2) | C2—C6—H6 | 115.5 |
N1—C1—C2 | 107.75 (17) | C8—C7—C6 | 105.9 (2) |
C1—C2—C3 | 105.23 (17) | C8—C7—H7 | 127.0 |
C1—C2—C6 | 110.89 (17) | C6—C7—H7 | 127.0 |
C3—C2—C6 | 101.12 (16) | C7—C8—C9 | 106.5 (2) |
C1—C2—H2A | 112.9 | C7—C8—H8 | 126.7 |
C3—C2—H2A | 112.9 | C9—C8—H8 | 126.7 |
C6—C2—H2A | 112.9 | O3—C9—C8 | 101.75 (17) |
C4—C3—C2 | 105.28 (17) | O3—C9—C3 | 99.01 (15) |
C4—C3—C9 | 111.29 (18) | C8—C9—C3 | 107.42 (18) |
C2—C3—C9 | 101.62 (16) | O3—C9—H9 | 115.5 |
C4—C3—H3 | 112.6 | C8—C9—H9 | 115.5 |
C2—C3—H3 | 112.6 | C3—C9—H9 | 115.5 |
C9—C3—H3 | 112.6 | ||
C1—N1—N2—C5 | 114.5 (2) | C9—C3—C4—N1 | 115.12 (18) |
C4—N1—N2—C5 | −82.6 (3) | N1—N2—C5—N3 | −3.0 (3) |
N2—N1—C1—O1 | −4.8 (3) | N1—N2—C5—S1 | 176.11 (16) |
C4—N1—C1—O1 | −169.10 (19) | C9—O3—C6—C7 | −49.14 (18) |
N2—N1—C1—C2 | 171.97 (16) | C9—O3—C6—C2 | 60.34 (17) |
C4—N1—C1—C2 | 7.6 (2) | C1—C2—C6—O3 | 76.2 (2) |
O1—C1—C2—C3 | 173.2 (2) | C3—C2—C6—O3 | −34.98 (19) |
N1—C1—C2—C3 | −3.4 (2) | C1—C2—C6—C7 | −178.11 (19) |
O1—C1—C2—C6 | 64.6 (3) | C3—C2—C6—C7 | 70.7 (2) |
N1—C1—C2—C6 | −111.89 (18) | O3—C6—C7—C8 | 32.6 (2) |
C1—C2—C3—C4 | −1.5 (2) | C2—C6—C7—C8 | −71.7 (2) |
C6—C2—C3—C4 | 113.97 (17) | C6—C7—C8—C9 | −1.1 (2) |
C1—C2—C3—C9 | −117.64 (18) | C6—O3—C9—C8 | 48.43 (18) |
C6—C2—C3—C9 | −2.2 (2) | C6—O3—C9—C3 | −61.60 (17) |
C1—N1—C4—O2 | 170.38 (19) | C7—C8—C9—O3 | −30.6 (2) |
N2—N1—C4—O2 | 6.3 (3) | C7—C8—C9—C3 | 72.9 (2) |
C1—N1—C4—C3 | −8.6 (2) | C4—C3—C9—O3 | −73.4 (2) |
N2—N1—C4—C3 | −172.69 (17) | C2—C3—C9—O3 | 38.29 (19) |
C2—C3—C4—O2 | −173.1 (2) | C4—C3—C9—C8 | −178.77 (18) |
C9—C3—C4—O2 | −63.8 (3) | C2—C3—C9—C8 | −67.1 (2) |
C2—C3—C4—N1 | 5.8 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O3i | 0.86 | 1.96 | 2.809 (2) | 167 |
N3—H3B···O1ii | 0.86 | 2.14 | 2.958 (2) | 160 |
N3—H3A···N1 | 0.86 | 2.35 | 2.697 (2) | 105 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) −x+3/2, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C9H9N3O3S |
Mr | 239.25 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 298 |
a, b, c (Å) | 8.3978 (8), 8.9032 (9), 13.5930 (14) |
V (Å3) | 1016.31 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.31 |
Crystal size (mm) | 0.45 × 0.43 × 0.40 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.872, 0.885 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5015, 1791, 1632 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.071, 1.07 |
No. of reflections | 1791 |
No. of parameters | 145 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.14, −0.16 |
Absolute structure | Flack (1983), 728 Friedel pairs |
Absolute structure parameter | 0.01 (9) |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O3i | 0.86 | 1.96 | 2.809 (2) | 167 |
N3—H3B···O1ii | 0.86 | 2.14 | 2.958 (2) | 160 |
N3—H3A···N1 | 0.86 | 2.35 | 2.697 (2) | 105 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) −x+3/2, −y+1, z+1/2. |
Acknowledgements
Shandong Provincial Natural Science Foundation, China, is thanked for support (ZR2009BL027).
References
Bruker (1997). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Deng, L. P. & Hu, Y. Z. (2007). J. Heterocycl. Chem. 44, 597–601. CrossRef CAS Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Goh, Y. W., Pool, B. R. & White, J. M. (2008). J. Org. Chem. 73, 151–156. Web of Science CSD CrossRef PubMed CAS Google Scholar
Hart, M. E., Chamberlin, A. R., Walkom, C., Sakoff, J. A. & McCluskey, A. (2004). Bioorg. Med. Chem. Lett. 14, 1969–1973. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
7-Oxa-bicyclo[2,2,1]hept-5-ene-2,3-dicarboxylic anhydride has been widely employed in clinical practice, as it is less toxic and much easier to be synthesized [Deng et al., 2007]. Its derivatives are also pharmacologically active [Hart et al., 2004]. We report here the crystal structure of the title compound, (I) which comprises a racemic mixture of chiral molecules containing four stereogenic centres. The cyclohexane ring tends towards a boat conformation, the tetrahydrofuran ring and the dihydrofuran ring adopt envelope conformations (Fig. 1). The bond lengths and bond angles are normal range and comparable to those in the similar compound [Goh, et al., 2008] as representative example. The dihedral angle between the thiosemicarbazide fragment and fused-ring system is 77.20 (10)°. The crystal structure is stabilized by two intermolecular N—H···O and one intramolecular N—H···N hydrogen bonds (Table 1, Fig. 2).