organic compounds
11-[(E)-Benzylidene]-14-hydroxy-8-phenyl-3,13-diazaheptacyclo[13.7.1.19,13.02,9.02,14.03,7.019,23]tetracosa-1(22),15,17,19(23),20-pentaen-10-one
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C35H30N2O2, the piperidine ring adopts a chair conformation and the pyrrolidine ring adopts an The naphthalene ring makes dihedral angles of 24.56 (3) and 36.13 (4)° with the terminal phenyl rings. The dihedral angle between the two terminal phenyl rings is 55.27 (5)°. One of the C atoms in the pyrrolidine ring is disordered over two sites, with a refined occupany ratio of 0.670 (3):0.330 (3). An intramolecular O—H⋯N hydrogen bond generates an S(6) ring. In the inversion dimers linked by pairs of C—H⋯O hydrogen bonds generate R22(18) loops within sheets of molecules lying parallel to the bc plane.
Related literature
For the details of cycloaddition reactions, see: Padwa (1984); Grigg & Sridharan (1993); Monlineux (1987). For puckering parameters, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810043874/hb5701sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810043874/hb5701Isup2.hkl
A mixture of 3,5-bis[(E)-phenylmethylidene]tetrahydro-4(1H)-pyridinone (0.100 g, 0.363 mmol), acenaphthenequinone (0.066 g, 0.363 mmol) and proline (0.042 g, 0.363 mmol) were dissolved in methanol (5 ml) and refluxed for 30 min. After completion of the reaction as evident from TLC, the mixture was poured into water (50 ml). The precipitated solid was filtered and washed with water to afford the product which was recrystallised from ethyl acetate to reveal the title compound as colourless plates.
The hydroxyl H atom H1O2 was located from a difference Fourier map and refined freely. The remaining H atoms were positioned geometrically [C—H = 0.93–0.97 Å] and were refined using a riding model, with Uiso(H) = 1.2Ueq(C). One of the C atom (C26) of the pyrrolidine ring and the associated H atoms H25A, H25B, H26A, H26B, H27A and H27B disordered over two sites with a refined occupancy ratio of 0.670 (3):0.330 (3).
The intermolecular [3+2]-cycloaddition of
with olefinic dipolarophiles affords a number of novel heterocyclic scaffolds which are useful for the creation of diverse chemical libraries of drug-like molecules for biological screening (Padwa, 1984; Grigg & Sridharan, 1993). Functionalized pyrrolizidines are the central skeleton for numerous and constitute classes of compounds with significant biological activity (Monlineux, 1987). In view of the biological significance of pyrrolizidines, the determination of the title compound was carried out and the results are presented here.The molecular structure of the title compound is shown in Fig. 1. The piperidine (N1/C8–C12) ring adopts a chair conformation [Q = 0.6060 (8) Å, θ = 141.15 (8)°, φ = 236.37 (12)°; Cremer & Pople, 1975]. The pyrrolidine ring, one of the C atom (C26) disordered over two sites with a refined occupancy ratio of 0.670 (3):0.330 (3). The major (N2/C25/C26A/C27/C28) and minor (N2/C25/C26B/C27/C28) disordered pyrrolidine rings adopt the same conformation, that is the puckering parameters Q(2) = 0.3547 (12) Å, φ = 257.52 (15)° for major disordered component and Q(2) = 0.3237 (17) Å, φ = 67.7 (2)° for minor disordered component. The naphthalene (C14–22/24) ring makes dihedral angles of 24.56 (3)° and 36.13 4)° with the terminal phenyl (C1–C6)/(C30–C35) rings. The dihedral angle between the two terminal phenyl rings (C1–C6) and (C30–C35) is 55.27 (5)°.
In the crystal packing (Fig. 2), adjacent molecules are connected by intramolecular O2—H1O2···N2 and intermolecular C35—H35A···O2 (Table 1) hydrogen bonds, forming dimers lying on sheets parallel to the bc plane.
For the details of
reactions, see: Padwa (1984); Grigg & Sridharan (1993); Monlineux (1987). For puckering parameters, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C35H30N2O2 | F(000) = 1080 |
Mr = 510.61 | Dx = 1.291 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9930 reflections |
a = 11.2264 (19) Å | θ = 2.7–35.4° |
b = 15.600 (3) Å | µ = 0.08 mm−1 |
c = 15.031 (3) Å | T = 100 K |
β = 93.927 (5)° | Plate, colourless |
V = 2626.2 (8) Å3 | 0.50 × 0.39 × 0.12 mm |
Z = 4 |
Bruker APEXII DUO CCD diffractometer | 11860 independent reflections |
Radiation source: fine-focus sealed tube | 9771 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
φ and ω scans | θmax = 35.4°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −18→17 |
Tmin = 0.961, Tmax = 0.991 | k = −25→25 |
44214 measured reflections | l = −24→24 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.145 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0795P)2 + 0.4943P] where P = (Fo2 + 2Fc2)/3 |
11860 reflections | (Δ/σ)max = 0.001 |
366 parameters | Δρmax = 0.56 e Å−3 |
0 restraints | Δρmin = −0.43 e Å−3 |
C35H30N2O2 | V = 2626.2 (8) Å3 |
Mr = 510.61 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.2264 (19) Å | µ = 0.08 mm−1 |
b = 15.600 (3) Å | T = 100 K |
c = 15.031 (3) Å | 0.50 × 0.39 × 0.12 mm |
β = 93.927 (5)° |
Bruker APEXII DUO CCD diffractometer | 11860 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 9771 reflections with I > 2σ(I) |
Tmin = 0.961, Tmax = 0.991 | Rint = 0.027 |
44214 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.145 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | Δρmax = 0.56 e Å−3 |
11860 reflections | Δρmin = −0.43 e Å−3 |
366 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | −0.17017 (5) | 0.82679 (4) | 1.03805 (4) | 0.01641 (11) | |
O2 | 0.08100 (6) | 0.56861 (4) | 0.87384 (4) | 0.01734 (11) | |
N1 | 0.08145 (6) | 0.63805 (4) | 1.01254 (4) | 0.01357 (11) | |
N2 | −0.13097 (6) | 0.63195 (4) | 0.83198 (4) | 0.01472 (12) | |
C1 | 0.22693 (8) | 0.98132 (6) | 1.04040 (7) | 0.02372 (17) | |
H1A | 0.1715 | 1.0100 | 1.0024 | 0.028* | |
C2 | 0.34217 (9) | 1.01357 (7) | 1.05405 (8) | 0.0296 (2) | |
H2A | 0.3638 | 1.0632 | 1.0249 | 0.035* | |
C3 | 0.42518 (9) | 0.97128 (8) | 1.11159 (8) | 0.0305 (2) | |
H3A | 0.5029 | 0.9919 | 1.1199 | 0.037* | |
C4 | 0.39160 (9) | 0.89812 (7) | 1.15656 (7) | 0.02777 (19) | |
H4A | 0.4465 | 0.8707 | 1.1960 | 0.033* | |
C5 | 0.27640 (8) | 0.86573 (6) | 1.14284 (6) | 0.02156 (16) | |
H5A | 0.2545 | 0.8170 | 1.1734 | 0.026* | |
C6 | 0.19310 (7) | 0.90631 (5) | 1.08312 (5) | 0.01729 (14) | |
C7 | 0.07160 (7) | 0.87336 (5) | 1.06380 (5) | 0.01624 (13) | |
H7A | 0.0115 | 0.9142 | 1.0555 | 0.019* | |
C8 | 0.03709 (7) | 0.79064 (5) | 1.05664 (5) | 0.01353 (12) | |
C9 | −0.09132 (7) | 0.77452 (5) | 1.02769 (4) | 0.01271 (12) | |
C10 | −0.11593 (6) | 0.68998 (5) | 0.98022 (4) | 0.01195 (12) | |
C11 | −0.04233 (7) | 0.61895 (5) | 1.03138 (5) | 0.01437 (13) | |
H11A | −0.0526 | 0.6218 | 1.0949 | 0.017* | |
H11B | −0.0658 | 0.5625 | 1.0097 | 0.017* | |
C12 | 0.12122 (7) | 0.71385 (5) | 1.06502 (5) | 0.01484 (13) | |
H12A | 0.1987 | 0.7314 | 1.0466 | 0.018* | |
H12B | 0.1314 | 0.6975 | 1.1273 | 0.018* | |
C13 | −0.05607 (6) | 0.69047 (5) | 0.88921 (4) | 0.01160 (12) | |
C14 | −0.02779 (7) | 0.77725 (5) | 0.85018 (4) | 0.01251 (12) | |
C15 | −0.09918 (7) | 0.84537 (5) | 0.82280 (5) | 0.01555 (13) | |
H15A | −0.1814 | 0.8428 | 0.8269 | 0.019* | |
C16 | −0.04540 (8) | 0.91968 (5) | 0.78807 (5) | 0.01880 (14) | |
H16A | −0.0936 | 0.9656 | 0.7692 | 0.023* | |
C17 | 0.07616 (8) | 0.92554 (5) | 0.78155 (6) | 0.02024 (15) | |
H17A | 0.1085 | 0.9744 | 0.7573 | 0.024* | |
C18 | 0.15253 (8) | 0.85727 (5) | 0.81173 (5) | 0.01741 (14) | |
C19 | 0.27885 (8) | 0.85440 (6) | 0.81185 (6) | 0.02362 (17) | |
H19A | 0.3199 | 0.9005 | 0.7894 | 0.028* | |
C20 | 0.34140 (8) | 0.78384 (7) | 0.84497 (7) | 0.02464 (17) | |
H20A | 0.4241 | 0.7835 | 0.8440 | 0.030* | |
C21 | 0.28357 (7) | 0.71167 (6) | 0.88052 (6) | 0.01966 (15) | |
H21A | 0.3274 | 0.6650 | 0.9032 | 0.024* | |
C22 | 0.16109 (7) | 0.71277 (5) | 0.88051 (5) | 0.01407 (12) | |
C23 | 0.07360 (6) | 0.64942 (5) | 0.91446 (5) | 0.01248 (12) | |
C24 | 0.09706 (7) | 0.78439 (5) | 0.84559 (5) | 0.01361 (12) | |
C25 | −0.16597 (7) | 0.65570 (5) | 0.73850 (5) | 0.01698 (14) | |
H25A | −0.1511 | 0.6088 | 0.6984 | 0.020* | 0.670 (3) |
H25B | −0.1220 | 0.7057 | 0.7207 | 0.020* | 0.670 (3) |
H25C | −0.1085 | 0.6350 | 0.6992 | 0.020* | 0.330 (3) |
H25D | −0.1727 | 0.7168 | 0.7321 | 0.020* | 0.330 (3) |
C26A | −0.29771 (12) | 0.67498 (9) | 0.73760 (9) | 0.0215 (3) | 0.670 (3) |
H26A | −0.3112 | 0.7338 | 0.7553 | 0.026* | 0.670 (3) |
H26B | −0.3366 | 0.6655 | 0.6788 | 0.026* | 0.670 (3) |
C26B | −0.2896 (2) | 0.61090 (17) | 0.71830 (17) | 0.0182 (6) | 0.330 (3) |
H26C | −0.3382 | 0.6421 | 0.6734 | 0.022* | 0.330 (3) |
H26D | −0.2796 | 0.5524 | 0.6982 | 0.022* | 0.330 (3) |
C27 | −0.34291 (9) | 0.61299 (8) | 0.80440 (6) | 0.02674 (19) | |
H27A | −0.3591 | 0.5573 | 0.7775 | 0.032* | 0.670 (3) |
H27B | −0.4152 | 0.6343 | 0.8286 | 0.032* | 0.670 (3) |
H27C | −0.3963 | 0.5654 | 0.8092 | 0.032* | 0.330 (3) |
H27D | −0.3870 | 0.6651 | 0.8107 | 0.032* | 0.330 (3) |
C28 | −0.24037 (8) | 0.60765 (6) | 0.87702 (5) | 0.01829 (14) | |
H28A | −0.2329 | 0.5491 | 0.9003 | 0.022* | |
C29 | −0.24766 (7) | 0.67195 (5) | 0.95408 (5) | 0.01499 (13) | |
H29A | −0.2825 | 0.7249 | 0.9287 | 0.018* | |
C30 | −0.32410 (7) | 0.64389 (6) | 1.02785 (6) | 0.01837 (14) | |
C31 | −0.41977 (9) | 0.69454 (7) | 1.04970 (9) | 0.0308 (2) | |
H31A | −0.4363 | 0.7452 | 1.0186 | 0.037* | |
C32 | −0.49117 (13) | 0.67017 (9) | 1.11779 (12) | 0.0489 (4) | |
H32A | −0.5564 | 0.7036 | 1.1306 | 0.059* | |
C33 | −0.46481 (14) | 0.59586 (9) | 1.16659 (11) | 0.0487 (4) | |
H33A | −0.5104 | 0.5809 | 1.2136 | 0.058* | |
C34 | −0.37055 (11) | 0.54436 (8) | 1.14494 (8) | 0.0341 (2) | |
H34A | −0.3530 | 0.4945 | 1.1771 | 0.041* | |
C35 | −0.30215 (8) | 0.56737 (6) | 1.07490 (6) | 0.02335 (17) | |
H35A | −0.2410 | 0.5314 | 1.0591 | 0.028* | |
H1O2 | 0.0112 (16) | 0.5609 (11) | 0.8451 (11) | 0.041 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0155 (2) | 0.0171 (3) | 0.0168 (2) | 0.0037 (2) | 0.00198 (18) | −0.00054 (19) |
O2 | 0.0203 (3) | 0.0111 (2) | 0.0206 (2) | 0.0022 (2) | 0.0013 (2) | −0.00293 (19) |
N1 | 0.0143 (3) | 0.0133 (3) | 0.0130 (2) | 0.0012 (2) | 0.00077 (19) | 0.0022 (2) |
N2 | 0.0183 (3) | 0.0137 (3) | 0.0118 (2) | −0.0034 (2) | −0.0016 (2) | 0.0009 (2) |
C1 | 0.0191 (3) | 0.0191 (4) | 0.0326 (4) | −0.0010 (3) | −0.0010 (3) | 0.0005 (3) |
C2 | 0.0227 (4) | 0.0256 (4) | 0.0404 (5) | −0.0068 (3) | 0.0019 (4) | −0.0011 (4) |
C3 | 0.0177 (4) | 0.0324 (5) | 0.0409 (5) | −0.0049 (4) | −0.0014 (3) | −0.0099 (4) |
C4 | 0.0200 (4) | 0.0298 (5) | 0.0321 (4) | 0.0006 (3) | −0.0086 (3) | −0.0081 (4) |
C5 | 0.0203 (4) | 0.0218 (4) | 0.0217 (3) | 0.0003 (3) | −0.0058 (3) | −0.0034 (3) |
C6 | 0.0152 (3) | 0.0164 (3) | 0.0200 (3) | 0.0005 (3) | −0.0006 (2) | −0.0036 (3) |
C7 | 0.0147 (3) | 0.0164 (3) | 0.0175 (3) | 0.0013 (2) | −0.0001 (2) | −0.0020 (2) |
C8 | 0.0137 (3) | 0.0159 (3) | 0.0110 (2) | 0.0015 (2) | 0.0001 (2) | −0.0005 (2) |
C9 | 0.0142 (3) | 0.0141 (3) | 0.0098 (2) | 0.0008 (2) | 0.0010 (2) | 0.0013 (2) |
C10 | 0.0121 (3) | 0.0125 (3) | 0.0114 (2) | 0.0001 (2) | 0.0016 (2) | 0.0025 (2) |
C11 | 0.0151 (3) | 0.0142 (3) | 0.0140 (3) | 0.0013 (2) | 0.0019 (2) | 0.0043 (2) |
C12 | 0.0151 (3) | 0.0161 (3) | 0.0130 (3) | 0.0022 (2) | −0.0015 (2) | 0.0004 (2) |
C13 | 0.0136 (3) | 0.0103 (3) | 0.0109 (2) | −0.0005 (2) | 0.0008 (2) | 0.0011 (2) |
C14 | 0.0163 (3) | 0.0108 (3) | 0.0105 (2) | −0.0006 (2) | 0.0017 (2) | 0.0011 (2) |
C15 | 0.0196 (3) | 0.0126 (3) | 0.0145 (3) | 0.0010 (3) | 0.0015 (2) | 0.0025 (2) |
C16 | 0.0274 (4) | 0.0122 (3) | 0.0170 (3) | 0.0005 (3) | 0.0023 (3) | 0.0032 (2) |
C17 | 0.0283 (4) | 0.0135 (3) | 0.0193 (3) | −0.0046 (3) | 0.0044 (3) | 0.0032 (3) |
C18 | 0.0217 (3) | 0.0147 (3) | 0.0163 (3) | −0.0046 (3) | 0.0048 (3) | 0.0007 (2) |
C19 | 0.0218 (4) | 0.0227 (4) | 0.0273 (4) | −0.0073 (3) | 0.0087 (3) | 0.0021 (3) |
C20 | 0.0174 (3) | 0.0276 (4) | 0.0299 (4) | −0.0039 (3) | 0.0080 (3) | 0.0006 (3) |
C21 | 0.0154 (3) | 0.0216 (4) | 0.0224 (3) | 0.0003 (3) | 0.0048 (3) | 0.0000 (3) |
C22 | 0.0149 (3) | 0.0139 (3) | 0.0137 (3) | −0.0007 (2) | 0.0033 (2) | −0.0005 (2) |
C23 | 0.0139 (3) | 0.0107 (3) | 0.0130 (3) | 0.0011 (2) | 0.0017 (2) | 0.0004 (2) |
C24 | 0.0167 (3) | 0.0127 (3) | 0.0117 (3) | −0.0017 (2) | 0.0033 (2) | 0.0001 (2) |
C25 | 0.0201 (3) | 0.0179 (3) | 0.0125 (3) | −0.0013 (3) | −0.0019 (2) | 0.0005 (2) |
C26A | 0.0201 (6) | 0.0247 (6) | 0.0188 (5) | 0.0008 (5) | −0.0056 (4) | 0.0012 (4) |
C26B | 0.0161 (10) | 0.0180 (11) | 0.0195 (10) | −0.0012 (8) | −0.0047 (8) | −0.0021 (8) |
C27 | 0.0202 (4) | 0.0373 (5) | 0.0221 (4) | −0.0118 (4) | −0.0034 (3) | −0.0006 (3) |
C28 | 0.0199 (3) | 0.0182 (3) | 0.0166 (3) | −0.0075 (3) | −0.0004 (2) | 0.0017 (3) |
C29 | 0.0131 (3) | 0.0144 (3) | 0.0173 (3) | −0.0014 (2) | 0.0004 (2) | 0.0038 (2) |
C30 | 0.0142 (3) | 0.0175 (3) | 0.0240 (3) | −0.0006 (3) | 0.0051 (3) | 0.0033 (3) |
C31 | 0.0219 (4) | 0.0220 (4) | 0.0503 (6) | 0.0045 (3) | 0.0163 (4) | 0.0079 (4) |
C32 | 0.0400 (6) | 0.0308 (6) | 0.0813 (10) | 0.0099 (5) | 0.0427 (7) | 0.0110 (6) |
C33 | 0.0506 (7) | 0.0319 (6) | 0.0694 (9) | 0.0048 (5) | 0.0468 (7) | 0.0116 (6) |
C34 | 0.0356 (5) | 0.0275 (5) | 0.0420 (5) | 0.0024 (4) | 0.0236 (5) | 0.0128 (4) |
C35 | 0.0209 (4) | 0.0215 (4) | 0.0291 (4) | 0.0019 (3) | 0.0114 (3) | 0.0082 (3) |
O1—C9 | 1.2213 (9) | C18—C19 | 1.4188 (13) |
O2—C23 | 1.4056 (9) | C19—C20 | 1.3801 (15) |
O2—H1O2 | 0.877 (18) | C19—H19A | 0.9300 |
N1—C11 | 1.4677 (10) | C20—C21 | 1.4222 (13) |
N1—C12 | 1.4737 (10) | C20—H20A | 0.9300 |
N1—C23 | 1.4814 (10) | C21—C22 | 1.3751 (11) |
N2—C13 | 1.4768 (10) | C21—H21A | 0.9300 |
N2—C25 | 1.4800 (10) | C22—C24 | 1.4103 (11) |
N2—C28 | 1.4914 (11) | C22—C23 | 1.5068 (11) |
C1—C2 | 1.3901 (13) | C25—C26A | 1.5083 (16) |
C1—C6 | 1.3998 (13) | C25—C26B | 1.565 (3) |
C1—H1A | 0.9300 | C25—H25A | 0.9700 |
C2—C3 | 1.3932 (16) | C25—H25B | 0.9700 |
C2—H2A | 0.9300 | C25—H25C | 0.9600 |
C3—C4 | 1.3917 (17) | C25—H25D | 0.9600 |
C3—H3A | 0.9300 | C26A—C27 | 1.5068 (17) |
C4—C5 | 1.3906 (13) | C26A—H25D | 1.5542 |
C4—H4A | 0.9300 | C26A—H26A | 0.9700 |
C5—C6 | 1.4022 (12) | C26A—H26B | 0.9700 |
C5—H5A | 0.9300 | C26A—H27D | 1.5449 |
C6—C7 | 1.4679 (11) | C26B—C27 | 1.463 (3) |
C7—C8 | 1.3497 (12) | C26B—H26C | 0.9700 |
C7—H7A | 0.9300 | C26B—H26D | 0.9700 |
C8—C9 | 1.4982 (11) | C27—C28 | 1.5334 (12) |
C8—C12 | 1.5253 (11) | C27—H27A | 0.9700 |
C9—C10 | 1.5158 (11) | C27—H27B | 0.9700 |
C10—C29 | 1.5299 (11) | C27—H27C | 0.9600 |
C10—C11 | 1.5540 (10) | C27—H27D | 0.9600 |
C10—C13 | 1.5650 (10) | C28—C29 | 1.5387 (12) |
C11—H11A | 0.9700 | C28—H28A | 0.9800 |
C11—H11B | 0.9700 | C29—C30 | 1.5125 (11) |
C12—H12A | 0.9700 | C29—H29A | 0.9800 |
C12—H12B | 0.9700 | C30—C31 | 1.3907 (13) |
C13—C14 | 1.5178 (10) | C30—C35 | 1.4009 (12) |
C13—C23 | 1.6117 (11) | C31—C32 | 1.3953 (16) |
C14—C15 | 1.3769 (11) | C31—H31A | 0.9300 |
C14—C24 | 1.4124 (11) | C32—C33 | 1.393 (2) |
C15—C16 | 1.4226 (12) | C32—H32A | 0.9300 |
C15—H15A | 0.9300 | C33—C34 | 1.3850 (17) |
C16—C17 | 1.3779 (13) | C33—H33A | 0.9300 |
C16—H16A | 0.9300 | C34—C35 | 1.3918 (13) |
C17—C18 | 1.4218 (13) | C34—H34A | 0.9300 |
C17—H17A | 0.9300 | C35—H35A | 0.9300 |
C18—C24 | 1.4082 (11) | ||
C23—O2—H1O2 | 105.1 (11) | N2—C25—C26A | 104.76 (7) |
C11—N1—C12 | 108.40 (6) | N2—C25—C26B | 104.28 (11) |
C11—N1—C23 | 102.93 (6) | C26A—C25—C26B | 39.77 (11) |
C12—N1—C23 | 115.58 (6) | N2—C25—H25A | 110.8 |
C13—N2—C25 | 120.12 (6) | C26A—C25—H25A | 110.8 |
C13—N2—C28 | 110.27 (6) | C26B—C25—H25A | 74.3 |
C25—N2—C28 | 108.73 (6) | N2—C25—H25B | 110.8 |
C2—C1—C6 | 120.92 (9) | C26A—C25—H25B | 110.8 |
C2—C1—H1A | 119.5 | C26B—C25—H25B | 140.1 |
C6—C1—H1A | 119.5 | H25A—C25—H25B | 108.9 |
C1—C2—C3 | 119.76 (10) | N2—C25—H25C | 110.8 |
C1—C2—H2A | 120.1 | C26A—C25—H25C | 139.6 |
C3—C2—H2A | 120.1 | C26B—C25—H25C | 110.8 |
C4—C3—C2 | 119.86 (9) | H25A—C25—H25C | 38.1 |
C4—C3—H3A | 120.1 | H25B—C25—H25C | 74.0 |
C2—C3—H3A | 120.1 | N2—C25—H25D | 110.9 |
C5—C4—C3 | 120.40 (9) | C26A—C25—H25D | 74.4 |
C5—C4—H4A | 119.8 | C26B—C25—H25D | 111.2 |
C3—C4—H4A | 119.8 | H25A—C25—H25D | 134.7 |
C4—C5—C6 | 120.24 (9) | H25B—C25—H25D | 38.2 |
C4—C5—H5A | 119.9 | H25C—C25—H25D | 108.9 |
C6—C5—H5A | 119.9 | C27—C26A—C25 | 103.94 (9) |
C1—C6—C5 | 118.76 (8) | C27—C26A—H25D | 130.6 |
C1—C6—C7 | 118.66 (8) | C25—C26A—H25D | 36.5 |
C5—C6—C7 | 122.58 (8) | C27—C26A—H26A | 111.0 |
C8—C7—C6 | 127.48 (7) | C25—C26A—H26A | 111.0 |
C8—C7—H7A | 116.3 | H25D—C26A—H26A | 77.1 |
C6—C7—H7A | 116.3 | C27—C26A—H26B | 111.0 |
C7—C8—C9 | 116.67 (7) | C25—C26A—H26B | 111.0 |
C7—C8—C12 | 124.86 (7) | H25D—C26A—H26B | 111.6 |
C9—C8—C12 | 118.05 (7) | H26A—C26A—H26B | 109.0 |
O1—C9—C8 | 122.84 (7) | C27—C26A—H27D | 36.6 |
O1—C9—C10 | 122.04 (7) | C25—C26A—H27D | 131.1 |
C8—C9—C10 | 115.05 (6) | H25D—C26A—H27D | 135.4 |
C9—C10—C29 | 115.01 (6) | H26A—C26A—H27D | 77.2 |
C9—C10—C11 | 108.29 (6) | H26B—C26A—H27D | 111.0 |
C29—C10—C11 | 117.89 (6) | C27—C26B—C25 | 103.27 (15) |
C9—C10—C13 | 109.39 (6) | C27—C26B—H26C | 111.1 |
C29—C10—C13 | 103.99 (6) | C25—C26B—H26C | 111.1 |
C11—C10—C13 | 100.97 (6) | C27—C26B—H26D | 111.1 |
N1—C11—C10 | 103.78 (6) | C25—C26B—H26D | 111.1 |
N1—C11—H11A | 111.0 | H26C—C26B—H26D | 109.1 |
C10—C11—H11A | 111.0 | C26B—C27—C26A | 41.24 (12) |
N1—C11—H11B | 111.0 | C26B—C27—C28 | 107.20 (12) |
C10—C11—H11B | 111.0 | C26A—C27—C28 | 103.80 (8) |
H11A—C11—H11B | 109.0 | C26B—C27—H27A | 71.8 |
N1—C12—C8 | 115.01 (6) | C26A—C27—H27A | 111.0 |
N1—C12—H12A | 108.5 | C28—C27—H27A | 111.0 |
C8—C12—H12A | 108.5 | C26B—C27—H27B | 137.9 |
N1—C12—H12B | 108.5 | C26A—C27—H27B | 111.0 |
C8—C12—H12B | 108.5 | C28—C27—H27B | 111.0 |
H12A—C12—H12B | 107.5 | H27A—C27—H27B | 109.0 |
N2—C13—C14 | 116.88 (6) | C26B—C27—H27C | 110.1 |
N2—C13—C10 | 104.16 (6) | C26A—C27—H27C | 141.9 |
C14—C13—C10 | 117.12 (6) | C28—C27—H27C | 110.3 |
N2—C13—C23 | 111.14 (6) | H27A—C27—H27C | 40.5 |
C14—C13—C23 | 103.65 (6) | H27B—C27—H27C | 72.2 |
C10—C13—C23 | 103.13 (5) | C26B—C27—H27D | 110.5 |
C15—C14—C24 | 118.93 (7) | C26A—C27—H27D | 73.8 |
C15—C14—C13 | 132.16 (7) | C28—C27—H27D | 110.1 |
C24—C14—C13 | 108.89 (6) | H27A—C27—H27D | 135.7 |
C14—C15—C16 | 119.05 (8) | H27B—C27—H27D | 39.0 |
C14—C15—H15A | 120.5 | H27C—C27—H27D | 108.5 |
C16—C15—H15A | 120.5 | N2—C28—C27 | 105.34 (7) |
C17—C16—C15 | 121.83 (8) | N2—C28—C29 | 105.30 (6) |
C17—C16—H16A | 119.1 | C27—C28—C29 | 115.11 (8) |
C15—C16—H16A | 119.1 | N2—C28—H28A | 110.3 |
C16—C17—C18 | 120.41 (7) | C27—C28—H28A | 110.3 |
C16—C17—H17A | 119.8 | C29—C28—H28A | 110.3 |
C18—C17—H17A | 119.8 | C30—C29—C10 | 116.86 (6) |
C24—C18—C19 | 116.15 (8) | C30—C29—C28 | 115.17 (7) |
C24—C18—C17 | 116.62 (8) | C10—C29—C28 | 102.30 (6) |
C19—C18—C17 | 127.22 (8) | C30—C29—H29A | 107.3 |
C20—C19—C18 | 120.63 (8) | C10—C29—H29A | 107.3 |
C20—C19—H19A | 119.7 | C28—C29—H29A | 107.3 |
C18—C19—H19A | 119.7 | C31—C30—C35 | 118.49 (8) |
C19—C20—C21 | 122.20 (8) | C31—C30—C29 | 119.66 (8) |
C19—C20—H20A | 118.9 | C35—C30—C29 | 121.85 (7) |
C21—C20—H20A | 118.9 | C30—C31—C32 | 120.68 (10) |
C22—C21—C20 | 118.18 (8) | C30—C31—H31A | 119.7 |
C22—C21—H21A | 120.9 | C32—C31—H31A | 119.7 |
C20—C21—H21A | 120.9 | C33—C32—C31 | 120.06 (10) |
C21—C22—C24 | 119.61 (7) | C33—C32—H32A | 120.0 |
C21—C22—C23 | 131.81 (7) | C31—C32—H32A | 120.0 |
C24—C22—C23 | 108.56 (6) | C34—C33—C32 | 119.82 (10) |
O2—C23—N1 | 108.88 (6) | C34—C33—H33A | 120.1 |
O2—C23—C22 | 112.45 (6) | C32—C33—H33A | 120.1 |
N1—C23—C22 | 114.82 (6) | C33—C34—C35 | 119.88 (10) |
O2—C23—C13 | 109.47 (6) | C33—C34—H34A | 120.1 |
N1—C23—C13 | 105.85 (5) | C35—C34—H34A | 120.1 |
C22—C23—C13 | 105.00 (6) | C34—C35—C30 | 120.96 (9) |
C18—C24—C22 | 123.19 (7) | C34—C35—H35A | 119.5 |
C18—C24—C14 | 123.10 (7) | C30—C35—H35A | 119.5 |
C22—C24—C14 | 113.68 (7) | ||
C6—C1—C2—C3 | −0.56 (16) | C21—C22—C23—O2 | −59.02 (11) |
C1—C2—C3—C4 | −1.41 (17) | C24—C22—C23—O2 | 122.53 (7) |
C2—C3—C4—C5 | 1.53 (16) | C21—C22—C23—N1 | 66.21 (11) |
C3—C4—C5—C6 | 0.32 (15) | C24—C22—C23—N1 | −112.24 (7) |
C2—C1—C6—C5 | 2.38 (14) | C21—C22—C23—C13 | −177.98 (8) |
C2—C1—C6—C7 | −177.78 (9) | C24—C22—C23—C13 | 3.58 (7) |
C4—C5—C6—C1 | −2.26 (13) | N2—C13—C23—O2 | 0.75 (8) |
C4—C5—C6—C7 | 177.92 (8) | C14—C13—C23—O2 | −125.60 (6) |
C1—C6—C7—C8 | 143.04 (9) | C10—C13—C23—O2 | 111.82 (6) |
C5—C6—C7—C8 | −37.13 (13) | N2—C13—C23—N1 | −116.46 (6) |
C6—C7—C8—C9 | −174.29 (7) | C14—C13—C23—N1 | 117.19 (6) |
C6—C7—C8—C12 | −1.87 (13) | C10—C13—C23—N1 | −5.38 (7) |
C7—C8—C9—O1 | −24.09 (10) | N2—C13—C23—C22 | 121.68 (6) |
C12—C8—C9—O1 | 162.95 (7) | C14—C13—C23—C22 | −4.67 (7) |
C7—C8—C9—C10 | 153.03 (7) | C10—C13—C23—C22 | −127.25 (6) |
C12—C8—C9—C10 | −19.93 (9) | C19—C18—C24—C22 | 1.84 (11) |
O1—C9—C10—C29 | −5.24 (10) | C17—C18—C24—C22 | −177.97 (7) |
C8—C9—C10—C29 | 177.62 (6) | C19—C18—C24—C14 | 179.91 (7) |
O1—C9—C10—C11 | −139.50 (7) | C17—C18—C24—C14 | 0.10 (11) |
C8—C9—C10—C11 | 43.36 (8) | C21—C22—C24—C18 | −1.44 (11) |
O1—C9—C10—C13 | 111.30 (8) | C23—C22—C24—C18 | 177.23 (7) |
C8—C9—C10—C13 | −65.84 (7) | C21—C22—C24—C14 | −179.67 (7) |
C12—N1—C11—C10 | 74.18 (7) | C23—C22—C24—C14 | −1.01 (9) |
C23—N1—C11—C10 | −48.73 (7) | C15—C14—C24—C18 | −1.93 (11) |
C9—C10—C11—N1 | −70.69 (7) | C13—C14—C24—C18 | 179.51 (7) |
C29—C10—C11—N1 | 156.57 (6) | C15—C14—C24—C22 | 176.31 (7) |
C13—C10—C11—N1 | 44.16 (7) | C13—C14—C24—C22 | −2.25 (8) |
C11—N1—C12—C8 | −50.47 (8) | C13—N2—C25—C26A | −109.04 (9) |
C23—N1—C12—C8 | 64.41 (8) | C28—N2—C25—C26A | 19.26 (10) |
C7—C8—C12—N1 | −149.86 (7) | C13—N2—C25—C26B | −150.18 (12) |
C9—C8—C12—N1 | 22.46 (9) | C28—N2—C25—C26B | −21.88 (13) |
C25—N2—C13—C14 | 5.38 (10) | N2—C25—C26A—C27 | −34.34 (11) |
C28—N2—C13—C14 | −122.22 (7) | C26B—C25—C26A—C27 | 60.38 (17) |
C25—N2—C13—C10 | 136.30 (7) | N2—C25—C26B—C27 | 32.81 (17) |
C28—N2—C13—C10 | 8.70 (8) | C26A—C25—C26B—C27 | −63.23 (16) |
C25—N2—C13—C23 | −113.28 (7) | C25—C26B—C27—C26A | 60.14 (14) |
C28—N2—C13—C23 | 119.12 (7) | C25—C26B—C27—C28 | −31.32 (17) |
C9—C10—C13—N2 | −152.17 (6) | C25—C26A—C27—C26B | −64.47 (16) |
C29—C10—C13—N2 | −28.84 (7) | C25—C26A—C27—C28 | 36.01 (11) |
C11—C10—C13—N2 | 93.80 (6) | C13—N2—C28—C27 | 136.76 (7) |
C9—C10—C13—C14 | −21.40 (8) | C25—N2—C28—C27 | 3.12 (9) |
C29—C10—C13—C14 | 101.93 (7) | C13—N2—C28—C29 | 14.67 (8) |
C11—C10—C13—C14 | −135.42 (6) | C25—N2—C28—C29 | −118.97 (7) |
C9—C10—C13—C23 | 91.67 (6) | C26B—C27—C28—N2 | 18.50 (14) |
C29—C10—C13—C23 | −145.00 (6) | C26A—C27—C28—N2 | −24.23 (11) |
C11—C10—C13—C23 | −22.35 (7) | C26B—C27—C28—C29 | 134.01 (13) |
N2—C13—C14—C15 | 63.31 (10) | C26A—C27—C28—C29 | 91.28 (10) |
C10—C13—C14—C15 | −61.28 (10) | C9—C10—C29—C30 | −76.41 (8) |
C23—C13—C14—C15 | −174.06 (8) | C11—C10—C29—C30 | 53.29 (9) |
N2—C13—C14—C24 | −118.39 (7) | C13—C10—C29—C30 | 164.01 (7) |
C10—C13—C14—C24 | 117.01 (7) | C9—C10—C29—C28 | 156.84 (6) |
C23—C13—C14—C24 | 4.23 (7) | C11—C10—C29—C28 | −73.46 (8) |
C24—C14—C15—C16 | 2.02 (11) | C13—C10—C29—C28 | 37.26 (7) |
C13—C14—C15—C16 | −179.82 (7) | N2—C28—C29—C30 | −159.99 (6) |
C14—C15—C16—C17 | −0.37 (12) | C27—C28—C29—C30 | 84.47 (9) |
C15—C16—C17—C18 | −1.50 (13) | N2—C28—C29—C10 | −32.16 (7) |
C16—C17—C18—C24 | 1.59 (12) | C27—C28—C29—C10 | −147.69 (7) |
C16—C17—C18—C19 | −178.19 (8) | C10—C29—C30—C31 | 117.65 (10) |
C24—C18—C19—C20 | −0.95 (13) | C28—C29—C30—C31 | −122.23 (10) |
C17—C18—C19—C20 | 178.83 (9) | C10—C29—C30—C35 | −62.92 (11) |
C18—C19—C20—C21 | −0.31 (15) | C28—C29—C30—C35 | 57.20 (11) |
C19—C20—C21—C22 | 0.76 (14) | C35—C30—C31—C32 | 0.86 (18) |
C20—C21—C22—C24 | 0.09 (12) | C29—C30—C31—C32 | −179.69 (12) |
C20—C21—C22—C23 | −178.21 (8) | C30—C31—C32—C33 | 2.0 (2) |
C11—N1—C23—O2 | −84.67 (7) | C31—C32—C33—C34 | −2.7 (3) |
C12—N1—C23—O2 | 157.36 (6) | C32—C33—C34—C35 | 0.4 (2) |
C11—N1—C23—C22 | 148.26 (6) | C33—C34—C35—C30 | 2.5 (2) |
C12—N1—C23—C22 | 30.29 (9) | C31—C30—C35—C34 | −3.16 (16) |
C11—N1—C23—C13 | 32.94 (7) | C29—C30—C35—C34 | 177.41 (10) |
C12—N1—C23—C13 | −85.03 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···N2 | 0.877 (18) | 1.942 (18) | 2.6134 (11) | 132.2 (15) |
C35—H35A···O2i | 0.93 | 2.54 | 3.3159 (13) | 142 |
Symmetry code: (i) −x, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C35H30N2O2 |
Mr | 510.61 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 11.2264 (19), 15.600 (3), 15.031 (3) |
β (°) | 93.927 (5) |
V (Å3) | 2626.2 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.50 × 0.39 × 0.12 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.961, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 44214, 11860, 9771 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.816 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.145, 1.10 |
No. of reflections | 11860 |
No. of parameters | 366 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.56, −0.43 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···N2 | 0.877 (18) | 1.942 (18) | 2.6134 (11) | 132.2 (15) |
C35—H35A···O2i | 0.93 | 2.54 | 3.3159 (13) | 142 |
Symmetry code: (i) −x, −y+1, −z+2. |
Acknowledgements
The synthetic chemistry work was funded by Universiti Sains Malaysia (USM) under a University Research Grant (1001/PKIMIA/811133) and RSK thanks Universiti Sains Malaysia for the award of postdoctoral fellowship. HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for a Research University Grant (No. 1001/PFIZIK/811160). MH also thanks Universiti Sains Malaysia for a postdoctoral research fellowship.
References
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
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Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Grigg, R. & Sridharan, V. (1993). In Advances in Cycloaddition, edited by D. P. Curran, p. 161. London: Jai Press. Google Scholar
Monlineux, R. J. (1987). Alkaloids: Chemical and Biological Perspective, edited by S. W. Pelletier, ch. 1. New York: Wiley. Google Scholar
Padwa, A. (1984). Editor. 1,3-Dipolar Cycloaddition Chemistry, Vols. 1 and 2. New York: Wiley. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The intermolecular [3+2]-cycloaddition of azomethine ylides with olefinic dipolarophiles affords a number of novel heterocyclic scaffolds which are useful for the creation of diverse chemical libraries of drug-like molecules for biological screening (Padwa, 1984; Grigg & Sridharan, 1993). Functionalized pyrrolizidines are the central skeleton for numerous alkaloids and constitute classes of compounds with significant biological activity (Monlineux, 1987). In view of the biological significance of pyrrolizidines, the crystal structure determination of the title compound was carried out and the results are presented here.
The molecular structure of the title compound is shown in Fig. 1. The piperidine (N1/C8–C12) ring adopts a chair conformation [Q = 0.6060 (8) Å, θ = 141.15 (8)°, φ = 236.37 (12)°; Cremer & Pople, 1975]. The pyrrolidine ring, one of the C atom (C26) disordered over two sites with a refined occupancy ratio of 0.670 (3):0.330 (3). The major (N2/C25/C26A/C27/C28) and minor (N2/C25/C26B/C27/C28) disordered pyrrolidine rings adopt the same conformation, that is the envelope conformation; puckering parameters Q(2) = 0.3547 (12) Å, φ = 257.52 (15)° for major disordered component and Q(2) = 0.3237 (17) Å, φ = 67.7 (2)° for minor disordered component. The naphthalene (C14–22/24) ring makes dihedral angles of 24.56 (3)° and 36.13 4)° with the terminal phenyl (C1–C6)/(C30–C35) rings. The dihedral angle between the two terminal phenyl rings (C1–C6) and (C30–C35) is 55.27 (5)°.
In the crystal packing (Fig. 2), adjacent molecules are connected by intramolecular O2—H1O2···N2 and intermolecular C35—H35A···O2 (Table 1) hydrogen bonds, forming dimers lying on sheets parallel to the bc plane.