organic compounds
(3R,6R,12R,20S,24S)-20,24-Epoxydammarane-3,6,12,25-tetraol dihydrate
aSchool of Pharmacy, Yantai University, Yantai 264005, People's Republic of China, bCollege of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, People's Republic of China, and cMicroscale Science Institute, Weifang University, Weifang 261061, People's Republic of China
*Correspondence e-mail: mqg@ytu.edu.cn
The title compound, C30H52O5·2H2O, was degraded from pseudoginsenoside F11 which was extracted and seperated from Panax quinquefolium saponin. The three six-membered rings are in chair conformations. The five-membered ring is in an and the tetrahydrofuran ring has a conformation intermediate between half-chair and envelope. In the crystal, intermolecular O—H⋯O hydrogen bonds link molecules into a three-dimensional network. Intramolecular O—H⋯O hydrogen bonds also occur.
Related literature
For background and the medicinal properties of Panax ginseng and Panax quinquefolium, see: Iljin et al. (1982); Shi et al. (1992); Shibata et al. (1985); Takano et al. (1999); Yu et al. (2007).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810046362/lh5154sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810046362/lh5154Isup2.hkl
Pseudoginsenoside F11 was extracted and seperated from Panax quinquefolium saponin. (3R,6R,12R,20S,24S)-20,24-epoxy-dammarane-3,6,12,25-tetraol was degraded from Pseudoginsenoside F11 with sodium in glycerine and seperated by flash
Finally, the crystals were dried at room temperature. Single crystals of compound (I) suitable for X-ray measurements were obtained by recrystallization from ethyl acetate at room temperature.H atoms bonded to C atoms were fixed geometrically and allowed to ride on their attached atoms, with C—H distances in the range 0.96–0.98 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(Cmethyl). The H atoms bonded to hydroxy O atoms were included with O-H = 0.82Å and Uiso(H) = 1.5Ueq(O) and water H atoms were included in 'as-found' positions with Uiso(H) = 0.12Å3. In the absence of anomlaous dispersion effects Friedel pairs were merged. The
is based on unchanging stereochemical centers in the synthesis.Both Panax ginseng and Panax quinquefolium, belonging to Araliaceae, are well known traditional medicinal herbs. They are used as tonics and for the treatment for diseases, such as tumor and myocardial ischemia. Panax ginseng contains a number of saponins, namely ginsenoside and an oleanolic acid-type saponin in addition to the major protopanaxadiol and protopanaxatriol-type saponins (Shibata et al.,1985). Panax quinquefolium contains an ocotillol-type (20S, 24R-epoxyside) saponin with high anti-tumor activity (Takano et al.,1999), as well as oleanolic acid-type saponin, protopanaxadiol and protopanaxatriol-type saponins. (3R,6R,12R,20S,24S)-20,24-epoxy-dammarane-3,6,12,25-tetraol is found to possess cardioprotective effects on myocardial injury induced by isoproterenol in rats (Yu et al.,2007). As part of our ongoing investigation of ocotillol-type compounds and their cardioprotective effect on myocardial injury, we report here the
of the title compound, (I).The molecular structure of (I) is shown in Fig. 1. In the molecule, all bond lengths and angles are within normal ranges (Shi et al.,1992; Iljin et al.,1982). The six-membered rings A(C3/C4/C5/C6/C7/C8), B(C7/C8/C10/C11/C12/C14), and C(C12/C14/C15/C16/C17/C18) are in chair conformations that depart significantly from ideal geometry to accommodate for intramolecular non-bonded 1,3-diaxial interactions involving the methyl groups. The five-membered ring D(C13/C14/C15/C16/C17) has an envelope form with C18 as the out-of-plane atom. The tetrahydrofuran ring has a conformation intermediate between half-chair and envelope forms. In the
intermolecular O-H···O hydrogen bonds link molecules into a three-dimensional network.For background and the medicinal properties of Panax ginseng and Panax quinquefolium, see: Iljin et al. (1982); Shi et al. (1992); Shibata et al. (1985); Takano et al. (1999); Yu et al. (2007).
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound with the atom-labeling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are not shown. |
C30H52O5·2H2O | F(000) = 1168 |
Mr = 528.75 | Dx = 1.186 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 5972 reflections |
a = 11.4575 (15) Å | θ = 2.4–28.0° |
b = 15.457 (2) Å | µ = 0.08 mm−1 |
c = 16.726 (2) Å | T = 298 K |
V = 2962.2 (7) Å3 | Block, colourless |
Z = 4 | 0.51 × 0.38 × 0.32 mm |
Bruker SMART CCD diffractometer | 2768 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.032 |
Graphite monochromator | θmax = 25.5°, θmin = 2.2° |
φ and ω scans | h = −13→13 |
15595 measured reflections | k = −18→18 |
3095 independent reflections | l = −10→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0592P)2 + 0.5608P] where P = (Fo2 + 2Fc2)/3 |
3095 reflections | (Δ/σ)max < 0.001 |
346 parameters | Δρmax = 0.18 e Å−3 |
6 restraints | Δρmin = −0.16 e Å−3 |
C30H52O5·2H2O | V = 2962.2 (7) Å3 |
Mr = 528.75 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 11.4575 (15) Å | µ = 0.08 mm−1 |
b = 15.457 (2) Å | T = 298 K |
c = 16.726 (2) Å | 0.51 × 0.38 × 0.32 mm |
Bruker SMART CCD diffractometer | 2768 reflections with I > 2σ(I) |
15595 measured reflections | Rint = 0.032 |
3095 independent reflections |
R[F2 > 2σ(F2)] = 0.042 | 6 restraints |
wR(F2) = 0.108 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.18 e Å−3 |
3095 reflections | Δρmin = −0.16 e Å−3 |
346 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7657 (3) | 0.50304 (19) | 0.18423 (19) | 0.0600 (8) | |
H1A | 0.7841 | 0.5541 | 0.1541 | 0.090* | |
H1B | 0.8326 | 0.4859 | 0.2149 | 0.090* | |
H1C | 0.7017 | 0.5149 | 0.2196 | 0.090* | |
C2 | 0.6080 (2) | 0.44716 (19) | 0.09599 (19) | 0.0546 (7) | |
H2A | 0.6027 | 0.5058 | 0.0774 | 0.082* | |
H2B | 0.5531 | 0.4384 | 0.1386 | 0.082* | |
H2C | 0.5904 | 0.4083 | 0.0528 | 0.082* | |
C3 | 0.7318 (2) | 0.42959 (16) | 0.12652 (17) | 0.0436 (6) | |
C4 | 0.8223 (2) | 0.43365 (17) | 0.05835 (17) | 0.0453 (6) | |
H4A | 0.8999 | 0.4327 | 0.0831 | 0.054* | |
C5 | 0.8168 (3) | 0.35892 (18) | 0.00041 (16) | 0.0485 (7) | |
H5A | 0.8769 | 0.3658 | −0.0400 | 0.058* | |
H5B | 0.7417 | 0.3588 | −0.0262 | 0.058* | |
C6 | 0.8343 (3) | 0.27323 (17) | 0.04358 (15) | 0.0437 (6) | |
H6A | 0.9126 | 0.2716 | 0.0654 | 0.052* | |
H6B | 0.8276 | 0.2265 | 0.0051 | 0.052* | |
C7 | 0.7463 (2) | 0.25757 (16) | 0.11176 (14) | 0.0367 (5) | |
C8 | 0.7455 (2) | 0.33919 (15) | 0.16833 (15) | 0.0370 (5) | |
H8 | 0.8237 | 0.3405 | 0.1920 | 0.044* | |
C9 | 0.6270 (2) | 0.23805 (18) | 0.07120 (16) | 0.0452 (6) | |
H9A | 0.6200 | 0.2718 | 0.0232 | 0.068* | |
H9B | 0.5648 | 0.2527 | 0.1072 | 0.068* | |
H9C | 0.6227 | 0.1777 | 0.0581 | 0.068* | |
C10 | 0.6633 (2) | 0.32106 (15) | 0.23917 (16) | 0.0402 (6) | |
H10 | 0.5864 | 0.3064 | 0.2173 | 0.048* | |
C11 | 0.7058 (2) | 0.24394 (16) | 0.28745 (15) | 0.0431 (6) | |
H11A | 0.6510 | 0.2339 | 0.3307 | 0.052* | |
H11B | 0.7802 | 0.2589 | 0.3114 | 0.052* | |
C12 | 0.7209 (2) | 0.15891 (15) | 0.24068 (14) | 0.0363 (5) | |
C13 | 0.5974 (2) | 0.12287 (18) | 0.22259 (17) | 0.0451 (6) | |
H13A | 0.5619 | 0.1035 | 0.2714 | 0.068* | |
H13B | 0.6036 | 0.0752 | 0.1860 | 0.068* | |
H13C | 0.5504 | 0.1676 | 0.1992 | 0.068* | |
C14 | 0.7921 (2) | 0.17999 (15) | 0.16346 (15) | 0.0359 (5) | |
H14 | 0.8678 | 0.2000 | 0.1836 | 0.043* | |
C15 | 0.8217 (2) | 0.09726 (16) | 0.11639 (15) | 0.0416 (6) | |
H15A | 0.7500 | 0.0713 | 0.0970 | 0.050* | |
H15B | 0.8690 | 0.1124 | 0.0704 | 0.050* | |
C16 | 0.8869 (2) | 0.03177 (16) | 0.16698 (15) | 0.0397 (6) | |
H16 | 0.9597 | 0.0583 | 0.1856 | 0.048* | |
C17 | 0.8132 (2) | 0.00865 (15) | 0.23932 (14) | 0.0367 (5) | |
H17 | 0.7367 | −0.0091 | 0.2190 | 0.044* | |
C18 | 0.7928 (2) | 0.09115 (16) | 0.29063 (15) | 0.0404 (6) | |
C19 | 0.9103 (3) | 0.12856 (18) | 0.32081 (17) | 0.0514 (7) | |
H19A | 0.8969 | 0.1624 | 0.3681 | 0.077* | |
H19B | 0.9439 | 0.1645 | 0.2801 | 0.077* | |
H19C | 0.9628 | 0.0820 | 0.3330 | 0.077* | |
C20 | 0.7324 (3) | 0.05094 (18) | 0.36378 (15) | 0.0518 (7) | |
H20A | 0.7330 | 0.0905 | 0.4088 | 0.062* | |
H20B | 0.6523 | 0.0353 | 0.3516 | 0.062* | |
C21 | 0.8061 (3) | −0.02966 (19) | 0.38146 (16) | 0.0542 (7) | |
H21A | 0.7589 | −0.0739 | 0.4068 | 0.065* | |
H21B | 0.8705 | −0.0153 | 0.4167 | 0.065* | |
C22 | 0.8527 (2) | −0.06215 (16) | 0.29903 (15) | 0.0414 (6) | |
H22 | 0.9382 | −0.0629 | 0.3008 | 0.050* | |
C23 | 0.8091 (2) | −0.15422 (16) | 0.28113 (15) | 0.0406 (6) | |
C24 | 0.8690 (3) | −0.2194 (2) | 0.33484 (18) | 0.0605 (8) | |
H24A | 0.8404 | −0.2763 | 0.3230 | 0.091* | |
H24B | 0.8529 | −0.2057 | 0.3897 | 0.091* | |
H24C | 0.9517 | −0.2174 | 0.3258 | 0.091* | |
C25 | 0.6758 (2) | −0.16592 (19) | 0.28239 (19) | 0.0530 (7) | |
H25A | 0.6509 | −0.1916 | 0.3325 | 0.064* | |
H25B | 0.6368 | −0.1106 | 0.2759 | 0.064* | |
C26 | 0.6484 (3) | −0.2245 (3) | 0.2139 (2) | 0.0717 (10) | |
H26A | 0.5886 | −0.1991 | 0.1803 | 0.086* | |
H26B | 0.6202 | −0.2798 | 0.2334 | 0.086* | |
C27 | 0.7600 (2) | −0.23660 (17) | 0.16702 (16) | 0.0441 (6) | |
H27 | 0.7902 | −0.2948 | 0.1777 | 0.053* | |
C28 | 0.7516 (3) | −0.22421 (18) | 0.07639 (16) | 0.0462 (6) | |
C29 | 0.6604 (3) | −0.2842 (2) | 0.0421 (2) | 0.0706 (9) | |
H29A | 0.5848 | −0.2681 | 0.0619 | 0.106* | |
H29B | 0.6775 | −0.3426 | 0.0577 | 0.106* | |
H29C | 0.6609 | −0.2800 | −0.0152 | 0.106* | |
C30 | 0.8687 (3) | −0.2400 (2) | 0.03777 (18) | 0.0629 (9) | |
H30A | 0.8627 | −0.2304 | −0.0188 | 0.094* | |
H30B | 0.8925 | −0.2986 | 0.0475 | 0.094* | |
H30C | 0.9253 | −0.2011 | 0.0600 | 0.094* | |
O1 | 0.71201 (17) | −0.13798 (12) | 0.05889 (13) | 0.0524 (5) | |
H1 | 0.7640 | −0.1033 | 0.0693 | 0.079* | |
O2 | 0.84059 (14) | −0.17448 (10) | 0.19926 (10) | 0.0380 (4) | |
O3 | 0.91541 (18) | −0.04074 (11) | 0.11696 (11) | 0.0491 (5) | |
H3 | 0.8984 | −0.0858 | 0.1401 | 0.074* | |
O4 | 0.64852 (19) | 0.39272 (12) | 0.29256 (12) | 0.0552 (5) | |
H4 | 0.7100 | 0.4020 | 0.3161 | 0.083* | |
O5 | 0.81123 (18) | 0.51420 (12) | 0.01735 (13) | 0.0559 (5) | |
H5 | 0.8679 | 0.5214 | −0.0118 | 0.084* | |
O6 | 0.1664 (2) | 0.9510 (2) | 0.11289 (16) | 0.1016 (10) | |
H6D | 0.0926 | 0.9519 | 0.1058 | 0.122* | |
H7A | 0.4471 | 0.4180 | 0.4365 | 0.122* | |
H6C | 0.1989 | 0.9933 | 0.0921 | 0.122* | |
H7B | 0.5268 | 0.4294 | 0.3756 | 0.122* | |
O7 | 0.5037 (2) | 0.44817 (18) | 0.42014 (16) | 0.0821 (8) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.077 (2) | 0.0443 (14) | 0.0584 (17) | −0.0088 (15) | 0.0047 (17) | 0.0012 (14) |
C2 | 0.0428 (15) | 0.0536 (16) | 0.0674 (19) | 0.0066 (13) | 0.0042 (14) | 0.0095 (15) |
C3 | 0.0435 (14) | 0.0405 (13) | 0.0469 (15) | 0.0016 (11) | 0.0028 (12) | 0.0015 (12) |
C4 | 0.0392 (14) | 0.0479 (14) | 0.0489 (15) | −0.0018 (11) | −0.0019 (12) | 0.0084 (12) |
C5 | 0.0513 (16) | 0.0557 (15) | 0.0385 (14) | 0.0009 (13) | 0.0068 (12) | 0.0082 (12) |
C6 | 0.0470 (15) | 0.0483 (14) | 0.0359 (13) | 0.0034 (12) | 0.0053 (12) | −0.0002 (11) |
C7 | 0.0348 (12) | 0.0427 (13) | 0.0326 (12) | −0.0015 (10) | −0.0013 (11) | −0.0019 (10) |
C8 | 0.0348 (12) | 0.0408 (13) | 0.0354 (12) | −0.0015 (10) | −0.0010 (11) | −0.0029 (11) |
C9 | 0.0441 (15) | 0.0518 (15) | 0.0399 (14) | −0.0022 (12) | −0.0043 (12) | −0.0057 (13) |
C10 | 0.0409 (13) | 0.0398 (12) | 0.0398 (14) | −0.0012 (11) | 0.0048 (12) | −0.0081 (11) |
C11 | 0.0495 (15) | 0.0466 (14) | 0.0334 (13) | −0.0027 (12) | 0.0083 (12) | −0.0058 (11) |
C12 | 0.0376 (13) | 0.0400 (12) | 0.0312 (12) | 0.0008 (11) | 0.0044 (10) | −0.0047 (10) |
C13 | 0.0391 (13) | 0.0484 (14) | 0.0477 (15) | −0.0028 (11) | 0.0068 (12) | −0.0014 (12) |
C14 | 0.0329 (12) | 0.0419 (13) | 0.0329 (12) | −0.0004 (10) | 0.0018 (10) | −0.0022 (10) |
C15 | 0.0482 (15) | 0.0442 (13) | 0.0325 (12) | 0.0013 (11) | 0.0102 (12) | −0.0013 (11) |
C16 | 0.0392 (13) | 0.0406 (13) | 0.0392 (13) | −0.0002 (10) | 0.0073 (11) | −0.0032 (11) |
C17 | 0.0353 (12) | 0.0402 (12) | 0.0346 (12) | −0.0016 (10) | 0.0010 (10) | −0.0024 (10) |
C18 | 0.0450 (13) | 0.0440 (13) | 0.0322 (12) | −0.0006 (11) | 0.0014 (11) | −0.0038 (11) |
C19 | 0.0578 (16) | 0.0504 (15) | 0.0462 (16) | −0.0017 (13) | −0.0124 (14) | −0.0044 (13) |
C20 | 0.0724 (19) | 0.0519 (15) | 0.0312 (13) | 0.0021 (14) | 0.0074 (13) | −0.0040 (12) |
C21 | 0.072 (2) | 0.0576 (16) | 0.0334 (13) | 0.0012 (15) | 0.0019 (14) | 0.0001 (13) |
C22 | 0.0397 (13) | 0.0500 (14) | 0.0345 (12) | −0.0008 (11) | −0.0013 (11) | 0.0006 (11) |
C23 | 0.0420 (13) | 0.0451 (13) | 0.0349 (13) | 0.0025 (11) | 0.0070 (11) | 0.0045 (11) |
C24 | 0.077 (2) | 0.0574 (17) | 0.0470 (16) | 0.0101 (16) | −0.0033 (16) | 0.0092 (15) |
C25 | 0.0437 (15) | 0.0515 (15) | 0.0639 (19) | −0.0012 (13) | 0.0115 (14) | 0.0044 (15) |
C26 | 0.0505 (17) | 0.106 (3) | 0.0582 (19) | −0.0272 (18) | 0.0041 (16) | 0.001 (2) |
C27 | 0.0484 (15) | 0.0363 (12) | 0.0478 (15) | −0.0050 (11) | −0.0073 (13) | 0.0052 (11) |
C28 | 0.0482 (15) | 0.0462 (14) | 0.0442 (14) | 0.0077 (12) | −0.0062 (13) | 0.0008 (12) |
C29 | 0.075 (2) | 0.070 (2) | 0.067 (2) | −0.0067 (18) | −0.0228 (19) | −0.0056 (18) |
C30 | 0.068 (2) | 0.075 (2) | 0.0459 (16) | 0.0217 (17) | 0.0027 (15) | −0.0087 (16) |
O1 | 0.0506 (11) | 0.0523 (11) | 0.0543 (11) | 0.0097 (9) | −0.0071 (10) | 0.0098 (10) |
O2 | 0.0353 (8) | 0.0418 (9) | 0.0370 (9) | 0.0006 (7) | 0.0022 (8) | 0.0003 (8) |
O3 | 0.0587 (11) | 0.0409 (9) | 0.0476 (10) | 0.0016 (9) | 0.0195 (10) | −0.0005 (9) |
O4 | 0.0682 (13) | 0.0476 (10) | 0.0500 (12) | 0.0035 (10) | 0.0078 (10) | −0.0130 (9) |
O5 | 0.0558 (13) | 0.0523 (11) | 0.0595 (12) | −0.0010 (9) | 0.0062 (10) | 0.0165 (10) |
O6 | 0.0586 (15) | 0.175 (3) | 0.0714 (16) | 0.0095 (18) | 0.0082 (13) | 0.021 (2) |
O7 | 0.0564 (13) | 0.1091 (19) | 0.0807 (16) | −0.0227 (13) | 0.0062 (12) | −0.0208 (16) |
C1—C3 | 1.540 (4) | C17—C18 | 1.555 (3) |
C1—H1A | 0.9600 | C17—H17 | 0.9800 |
C1—H1B | 0.9600 | C18—C20 | 1.537 (4) |
C1—H1C | 0.9600 | C18—C19 | 1.549 (4) |
C2—C3 | 1.532 (4) | C19—H19A | 0.9600 |
C2—H2A | 0.9600 | C19—H19B | 0.9600 |
C2—H2B | 0.9600 | C19—H19C | 0.9600 |
C2—H2C | 0.9600 | C20—C21 | 1.534 (4) |
C3—C4 | 1.543 (4) | C20—H20A | 0.9700 |
C3—C8 | 1.570 (3) | C20—H20B | 0.9700 |
C4—O5 | 1.427 (3) | C21—C22 | 1.561 (4) |
C4—C5 | 1.509 (4) | C21—H21A | 0.9700 |
C4—H4A | 0.9800 | C21—H21B | 0.9700 |
C5—C6 | 1.522 (4) | C22—C23 | 1.538 (4) |
C5—H5A | 0.9700 | C22—H22 | 0.9800 |
C5—H5B | 0.9700 | C23—O2 | 1.450 (3) |
C6—C7 | 1.541 (3) | C23—C24 | 1.514 (4) |
C6—H6A | 0.9700 | C23—C25 | 1.538 (4) |
C6—H6B | 0.9700 | C24—H24A | 0.9600 |
C7—C9 | 1.555 (3) | C24—H24B | 0.9600 |
C7—C14 | 1.569 (3) | C24—H24C | 0.9600 |
C7—C8 | 1.577 (3) | C25—C26 | 1.494 (5) |
C8—C10 | 1.539 (3) | C25—H25A | 0.9700 |
C8—H8 | 0.9800 | C25—H25B | 0.9700 |
C9—H9A | 0.9600 | C26—C27 | 1.511 (4) |
C9—H9B | 0.9600 | C26—H26A | 0.9700 |
C9—H9C | 0.9600 | C26—H26B | 0.9700 |
C10—O4 | 1.433 (3) | C27—O2 | 1.437 (3) |
C10—C11 | 1.520 (4) | C27—C28 | 1.531 (4) |
C10—H10 | 0.9800 | C27—H27 | 0.9800 |
C11—C12 | 1.539 (3) | C28—O1 | 1.438 (3) |
C11—H11A | 0.9700 | C28—C30 | 1.509 (4) |
C11—H11B | 0.9700 | C28—C29 | 1.511 (4) |
C12—C13 | 1.550 (4) | C29—H29A | 0.9600 |
C12—C14 | 1.562 (3) | C29—H29B | 0.9600 |
C12—C18 | 1.573 (4) | C29—H29C | 0.9600 |
C13—H13A | 0.9600 | C30—H30A | 0.9600 |
C13—H13B | 0.9600 | C30—H30B | 0.9600 |
C13—H13C | 0.9600 | C30—H30C | 0.9600 |
C14—C15 | 1.539 (3) | O1—H1 | 0.8200 |
C14—H14 | 0.9800 | O3—H3 | 0.8200 |
C15—C16 | 1.516 (4) | O4—H4 | 0.8200 |
C15—H15A | 0.9700 | O5—H5 | 0.8200 |
C15—H15B | 0.9700 | O6—H6D | 0.8537 |
C16—O3 | 1.436 (3) | O6—H6C | 0.8296 |
C16—C17 | 1.518 (3) | O7—H7A | 0.8443 |
C16—H16 | 0.9800 | O7—H7B | 0.8426 |
C17—C22 | 1.549 (3) | ||
C3—C1—H1A | 109.5 | C15—C16—H16 | 108.5 |
C3—C1—H1B | 109.5 | C17—C16—H16 | 108.5 |
H1A—C1—H1B | 109.5 | C16—C17—C22 | 121.2 (2) |
C3—C1—H1C | 109.5 | C16—C17—C18 | 109.29 (19) |
H1A—C1—H1C | 109.5 | C22—C17—C18 | 105.51 (18) |
H1B—C1—H1C | 109.5 | C16—C17—H17 | 106.7 |
C3—C2—H2A | 109.5 | C22—C17—H17 | 106.7 |
C3—C2—H2B | 109.5 | C18—C17—H17 | 106.7 |
H2A—C2—H2B | 109.5 | C20—C18—C19 | 106.4 (2) |
C3—C2—H2C | 109.5 | C20—C18—C17 | 100.10 (19) |
H2A—C2—H2C | 109.5 | C19—C18—C17 | 110.8 (2) |
H2B—C2—H2C | 109.5 | C20—C18—C12 | 117.1 (2) |
C2—C3—C1 | 108.2 (2) | C19—C18—C12 | 112.3 (2) |
C2—C3—C4 | 111.7 (2) | C17—C18—C12 | 109.37 (19) |
C1—C3—C4 | 105.3 (2) | C18—C19—H19A | 109.5 |
C2—C3—C8 | 113.5 (2) | C18—C19—H19B | 109.5 |
C1—C3—C8 | 110.6 (2) | H19A—C19—H19B | 109.5 |
C4—C3—C8 | 107.3 (2) | C18—C19—H19C | 109.5 |
O5—C4—C5 | 110.8 (2) | H19A—C19—H19C | 109.5 |
O5—C4—C3 | 109.3 (2) | H19B—C19—H19C | 109.5 |
C5—C4—C3 | 114.5 (2) | C21—C20—C18 | 103.5 (2) |
O5—C4—H4A | 107.3 | C21—C20—H20A | 111.1 |
C5—C4—H4A | 107.3 | C18—C20—H20A | 111.1 |
C3—C4—H4A | 107.3 | C21—C20—H20B | 111.1 |
C4—C5—C6 | 110.9 (2) | C18—C20—H20B | 111.1 |
C4—C5—H5A | 109.5 | H20A—C20—H20B | 109.0 |
C6—C5—H5A | 109.5 | C20—C21—C22 | 106.2 (2) |
C4—C5—H5B | 109.5 | C20—C21—H21A | 110.5 |
C6—C5—H5B | 109.5 | C22—C21—H21A | 110.5 |
H5A—C5—H5B | 108.1 | C20—C21—H21B | 110.5 |
C5—C6—C7 | 113.7 (2) | C22—C21—H21B | 110.5 |
C5—C6—H6A | 108.8 | H21A—C21—H21B | 108.7 |
C7—C6—H6A | 108.8 | C23—C22—C17 | 115.7 (2) |
C5—C6—H6B | 108.8 | C23—C22—C21 | 111.0 (2) |
C7—C6—H6B | 108.8 | C17—C22—C21 | 104.0 (2) |
H6A—C6—H6B | 107.7 | C23—C22—H22 | 108.6 |
C6—C7—C9 | 106.4 (2) | C17—C22—H22 | 108.6 |
C6—C7—C14 | 108.0 (2) | C21—C22—H22 | 108.6 |
C9—C7—C14 | 112.7 (2) | O2—C23—C24 | 107.7 (2) |
C6—C7—C8 | 108.8 (2) | O2—C23—C22 | 107.6 (2) |
C9—C7—C8 | 114.3 (2) | C24—C23—C22 | 110.7 (2) |
C14—C7—C8 | 106.43 (19) | O2—C23—C25 | 103.6 (2) |
C10—C8—C3 | 116.3 (2) | C24—C23—C25 | 111.3 (2) |
C10—C8—C7 | 108.65 (19) | C22—C23—C25 | 115.4 (2) |
C3—C8—C7 | 116.4 (2) | C23—C24—H24A | 109.5 |
C10—C8—H8 | 104.7 | C23—C24—H24B | 109.5 |
C3—C8—H8 | 104.7 | H24A—C24—H24B | 109.5 |
C7—C8—H8 | 104.7 | C23—C24—H24C | 109.5 |
C7—C9—H9A | 109.5 | H24A—C24—H24C | 109.5 |
C7—C9—H9B | 109.5 | H24B—C24—H24C | 109.5 |
H9A—C9—H9B | 109.5 | C26—C25—C23 | 105.6 (2) |
C7—C9—H9C | 109.5 | C26—C25—H25A | 110.6 |
H9A—C9—H9C | 109.5 | C23—C25—H25A | 110.6 |
H9B—C9—H9C | 109.5 | C26—C25—H25B | 110.6 |
O4—C10—C11 | 108.2 (2) | C23—C25—H25B | 110.6 |
O4—C10—C8 | 114.3 (2) | H25A—C25—H25B | 108.7 |
C11—C10—C8 | 110.8 (2) | C25—C26—C27 | 107.1 (2) |
O4—C10—H10 | 107.8 | C25—C26—H26A | 110.3 |
C11—C10—H10 | 107.8 | C27—C26—H26A | 110.3 |
C8—C10—H10 | 107.8 | C25—C26—H26B | 110.3 |
C10—C11—C12 | 115.8 (2) | C27—C26—H26B | 110.3 |
C10—C11—H11A | 108.3 | H26A—C26—H26B | 108.5 |
C12—C11—H11A | 108.3 | O2—C27—C26 | 105.5 (2) |
C10—C11—H11B | 108.3 | O2—C27—C28 | 109.2 (2) |
C12—C11—H11B | 108.3 | C26—C27—C28 | 116.4 (3) |
H11A—C11—H11B | 107.4 | O2—C27—H27 | 108.5 |
C11—C12—C13 | 107.6 (2) | C26—C27—H27 | 108.5 |
C11—C12—C14 | 107.51 (19) | C28—C27—H27 | 108.5 |
C13—C12—C14 | 113.0 (2) | O1—C28—C30 | 110.1 (2) |
C11—C12—C18 | 111.0 (2) | O1—C28—C29 | 105.9 (2) |
C13—C12—C18 | 110.0 (2) | C30—C28—C29 | 110.6 (3) |
C14—C12—C18 | 107.74 (19) | O1—C28—C27 | 109.7 (2) |
C12—C13—H13A | 109.5 | C30—C28—C27 | 110.4 (2) |
C12—C13—H13B | 109.5 | C29—C28—C27 | 110.1 (3) |
H13A—C13—H13B | 109.5 | C28—C29—H29A | 109.5 |
C12—C13—H13C | 109.5 | C28—C29—H29B | 109.5 |
H13A—C13—H13C | 109.5 | H29A—C29—H29B | 109.5 |
H13B—C13—H13C | 109.5 | C28—C29—H29C | 109.5 |
C15—C14—C12 | 111.37 (19) | H29A—C29—H29C | 109.5 |
C15—C14—C7 | 115.3 (2) | H29B—C29—H29C | 109.5 |
C12—C14—C7 | 116.13 (19) | C28—C30—H30A | 109.5 |
C15—C14—H14 | 104.1 | C28—C30—H30B | 109.5 |
C12—C14—H14 | 104.1 | H30A—C30—H30B | 109.5 |
C7—C14—H14 | 104.1 | C28—C30—H30C | 109.5 |
C16—C15—C14 | 112.2 (2) | H30A—C30—H30C | 109.5 |
C16—C15—H15A | 109.2 | H30B—C30—H30C | 109.5 |
C14—C15—H15A | 109.2 | C28—O1—H1 | 109.5 |
C16—C15—H15B | 109.2 | C27—O2—C23 | 109.80 (19) |
C14—C15—H15B | 109.2 | C16—O3—H3 | 109.5 |
H15A—C15—H15B | 107.9 | C10—O4—H4 | 109.5 |
O3—C16—C15 | 107.9 (2) | C4—O5—H5 | 109.5 |
O3—C16—C17 | 114.01 (19) | H6D—O6—H6C | 111.9 |
C15—C16—C17 | 109.1 (2) | H7A—O7—H7B | 109.7 |
O3—C16—H16 | 108.5 | ||
C2—C3—C4—O5 | 53.7 (3) | O3—C16—C17—C18 | 177.5 (2) |
C1—C3—C4—O5 | −63.5 (3) | C15—C16—C17—C18 | −61.8 (3) |
C8—C3—C4—O5 | 178.7 (2) | C16—C17—C18—C20 | −173.0 (2) |
C2—C3—C4—C5 | −71.3 (3) | C22—C17—C18—C20 | −41.2 (3) |
C1—C3—C4—C5 | 171.5 (2) | C16—C17—C18—C19 | −60.9 (3) |
C8—C3—C4—C5 | 53.7 (3) | C22—C17—C18—C19 | 70.9 (2) |
O5—C4—C5—C6 | 177.4 (2) | C16—C17—C18—C12 | 63.4 (3) |
C3—C4—C5—C6 | −58.4 (3) | C22—C17—C18—C12 | −164.77 (19) |
C4—C5—C6—C7 | 56.6 (3) | C11—C12—C18—C20 | 70.8 (3) |
C5—C6—C7—C9 | 72.3 (3) | C13—C12—C18—C20 | −48.2 (3) |
C5—C6—C7—C14 | −166.4 (2) | C14—C12—C18—C20 | −171.7 (2) |
C5—C6—C7—C8 | −51.3 (3) | C11—C12—C18—C19 | −52.8 (3) |
C2—C3—C8—C10 | −56.4 (3) | C13—C12—C18—C19 | −171.8 (2) |
C1—C3—C8—C10 | 65.4 (3) | C14—C12—C18—C19 | 64.6 (2) |
C4—C3—C8—C10 | 179.7 (2) | C11—C12—C18—C17 | −176.3 (2) |
C2—C3—C8—C7 | 73.7 (3) | C13—C12—C18—C17 | 64.7 (2) |
C1—C3—C8—C7 | −164.5 (2) | C14—C12—C18—C17 | −58.9 (2) |
C4—C3—C8—C7 | −50.2 (3) | C19—C18—C20—C21 | −71.0 (3) |
C6—C7—C8—C10 | −176.5 (2) | C17—C18—C20—C21 | 44.4 (3) |
C9—C7—C8—C10 | 64.7 (3) | C12—C18—C20—C21 | 162.5 (2) |
C14—C7—C8—C10 | −60.4 (2) | C18—C20—C21—C22 | −32.0 (3) |
C6—C7—C8—C3 | 49.8 (3) | C16—C17—C22—C23 | −91.4 (3) |
C9—C7—C8—C3 | −69.0 (3) | C18—C17—C22—C23 | 143.9 (2) |
C14—C7—C8—C3 | 165.9 (2) | C16—C17—C22—C21 | 146.6 (2) |
C3—C8—C10—O4 | −42.3 (3) | C18—C17—C22—C21 | 21.9 (3) |
C7—C8—C10—O4 | −176.0 (2) | C20—C21—C22—C23 | −119.1 (3) |
C3—C8—C10—C11 | −164.9 (2) | C20—C21—C22—C17 | 6.0 (3) |
C7—C8—C10—C11 | 61.4 (3) | C17—C22—C23—O2 | 53.1 (3) |
O4—C10—C11—C12 | 177.1 (2) | C21—C22—C23—O2 | 171.4 (2) |
C8—C10—C11—C12 | −56.9 (3) | C17—C22—C23—C24 | 170.6 (2) |
C10—C11—C12—C13 | −73.3 (3) | C21—C22—C23—C24 | −71.2 (3) |
C10—C11—C12—C14 | 48.7 (3) | C17—C22—C23—C25 | −61.9 (3) |
C10—C11—C12—C18 | 166.3 (2) | C21—C22—C23—C25 | 56.3 (3) |
C11—C12—C14—C15 | 174.7 (2) | O2—C23—C25—C26 | 22.3 (3) |
C13—C12—C14—C15 | −66.7 (3) | C24—C23—C25—C26 | −93.1 (3) |
C18—C12—C14—C15 | 55.1 (3) | C22—C23—C25—C26 | 139.7 (3) |
C11—C12—C14—C7 | −50.7 (3) | C23—C25—C26—C27 | −7.6 (4) |
C13—C12—C14—C7 | 68.0 (3) | C25—C26—C27—O2 | −10.2 (3) |
C18—C12—C14—C7 | −170.30 (19) | C25—C26—C27—C28 | −131.4 (3) |
C6—C7—C14—C15 | −52.5 (3) | O2—C27—C28—O1 | −59.5 (3) |
C9—C7—C14—C15 | 64.7 (3) | C26—C27—C28—O1 | 59.7 (3) |
C8—C7—C14—C15 | −169.2 (2) | O2—C27—C28—C30 | 61.9 (3) |
C6—C7—C14—C12 | 174.6 (2) | C26—C27—C28—C30 | −178.8 (3) |
C9—C7—C14—C12 | −68.1 (3) | O2—C27—C28—C29 | −175.7 (2) |
C8—C7—C14—C12 | 58.0 (3) | C26—C27—C28—C29 | −56.4 (3) |
C12—C14—C15—C16 | −56.1 (3) | C26—C27—O2—C23 | 25.7 (3) |
C7—C14—C15—C16 | 168.9 (2) | C28—C27—O2—C23 | 151.5 (2) |
C14—C15—C16—O3 | −177.17 (19) | C24—C23—O2—C27 | 87.9 (2) |
C14—C15—C16—C17 | 58.4 (3) | C22—C23—O2—C27 | −152.78 (19) |
O3—C16—C17—C22 | 54.6 (3) | C25—C23—O2—C27 | −30.1 (2) |
C15—C16—C17—C22 | 175.3 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H7B···O4 | 0.84 | 2.05 | 2.836 (3) | 155 |
O6—H6C···O5i | 0.83 | 2.24 | 2.791 (3) | 124 |
O7—H7A···O1ii | 0.84 | 2.02 | 2.829 (3) | 160 |
O6—H6D···O3iii | 0.85 | 2.04 | 2.879 (3) | 167 |
O5—H5···O7iv | 0.82 | 1.92 | 2.734 (3) | 174 |
O4—H4···O6v | 0.82 | 2.00 | 2.795 (3) | 164 |
O3—H3···O2 | 0.82 | 1.82 | 2.627 (2) | 170 |
O1—H1···O3 | 0.82 | 2.14 | 2.938 (3) | 164 |
Symmetry codes: (i) x−1/2, −y+3/2, −z; (ii) −x+1, y+1/2, −z+1/2; (iii) x−1, y+1, z; (iv) −x+3/2, −y+1, z−1/2; (v) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C30H52O5·2H2O |
Mr | 528.75 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 298 |
a, b, c (Å) | 11.4575 (15), 15.457 (2), 16.726 (2) |
V (Å3) | 2962.2 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.51 × 0.38 × 0.32 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15595, 3095, 2768 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.108, 1.05 |
No. of reflections | 3095 |
No. of parameters | 346 |
No. of restraints | 6 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.16 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H7B···O4 | 0.84 | 2.05 | 2.836 (3) | 155.3 |
O6—H6C···O5i | 0.83 | 2.24 | 2.791 (3) | 124.0 |
O7—H7A···O1ii | 0.84 | 2.02 | 2.829 (3) | 160.4 |
O6—H6D···O3iii | 0.85 | 2.04 | 2.879 (3) | 166.6 |
O5—H5···O7iv | 0.82 | 1.92 | 2.734 (3) | 173.5 |
O4—H4···O6v | 0.82 | 2.00 | 2.795 (3) | 164.0 |
O3—H3···O2 | 0.82 | 1.82 | 2.627 (2) | 170.0 |
O1—H1···O3 | 0.82 | 2.14 | 2.938 (3) | 164.4 |
Symmetry codes: (i) x−1/2, −y+3/2, −z; (ii) −x+1, y+1/2, −z+1/2; (iii) x−1, y+1, z; (iv) −x+3/2, −y+1, z−1/2; (v) −x+1, y−1/2, −z+1/2. |
Acknowledgements
The authors would like to thank the Shandong Provincial Natural Science Foundation, China (Y2007C138), the Scientific Reasearch Foundation of the Higher Education Institutions of Shandong Province, China (J07WE26) and the National Natural Science Foundation of China (No.81001358) for research grants.
References
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Iljin, S. G., Mallnovskaya, G. V., Uvarova, N. I., Elyakov, G. B., Antipin, M. Yu & Struchkov, Yu. T. (1982). Tetrahedron Lett. 23, 5067–5070. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Shi, Q., Hen, K., Jioka, T. & Mhiwada, Y. (1992). J. Nat. Prod. 55, 1488–1497. CSD CrossRef PubMed CAS Web of Science Google Scholar
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Both Panax ginseng and Panax quinquefolium, belonging to Araliaceae, are well known traditional medicinal herbs. They are used as tonics and for the treatment for diseases, such as tumor and myocardial ischemia. Panax ginseng contains a number of saponins, namely ginsenoside and an oleanolic acid-type saponin in addition to the major protopanaxadiol and protopanaxatriol-type saponins (Shibata et al.,1985). Panax quinquefolium contains an ocotillol-type (20S, 24R-epoxyside) saponin with high anti-tumor activity (Takano et al.,1999), as well as oleanolic acid-type saponin, protopanaxadiol and protopanaxatriol-type saponins. (3R,6R,12R,20S,24S)-20,24-epoxy-dammarane-3,6,12,25-tetraol is found to possess cardioprotective effects on myocardial injury induced by isoproterenol in rats (Yu et al.,2007). As part of our ongoing investigation of ocotillol-type compounds and their cardioprotective effect on myocardial injury, we report here the crystal structure of the title compound, (I).
The molecular structure of (I) is shown in Fig. 1. In the molecule, all bond lengths and angles are within normal ranges (Shi et al.,1992; Iljin et al.,1982). The six-membered rings A(C3/C4/C5/C6/C7/C8), B(C7/C8/C10/C11/C12/C14), and C(C12/C14/C15/C16/C17/C18) are in chair conformations that depart significantly from ideal geometry to accommodate for intramolecular non-bonded 1,3-diaxial interactions involving the methyl groups. The five-membered ring D(C13/C14/C15/C16/C17) has an envelope form with C18 as the out-of-plane atom. The tetrahydrofuran ring has a conformation intermediate between half-chair and envelope forms. In the crystal structure intermolecular O-H···O hydrogen bonds link molecules into a three-dimensional network.