organic compounds
4-Carbamoylpiperidinium acetate monohydrate
aFaculty of Science and Technology, Queensland University of Technology, GPO Box 2434, Brisbane, Queensland 4001, Australia
*Correspondence e-mail: g.smith@qut.edu.au
In the structure of the title compound, C6H13N2O+·C2H3O2−·H2O, the amide H atoms of the cations form centrosymmetric cyclic hydrogen-bonding associations incorporating two water molecules [graph set R42(8)], which are conjoint with cyclic water-bridged amide–amide associations [R44(12)] and larger R44(20) associations involving the water molecule and the acetate anions, which bridge through the piperidinium H-bond donors, giving an overall three-dimensional framework structure.
Related literature
For structural data on isonipecotamide salts, see: Smith et al. (2010); Smith & Wermuth (2010a,b). For graph-set motifs, see: Etter et al. (1990).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) within WinGX (Farrugia, 1999); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
https://doi.org/10.1107/S1600536810045538/nk2071sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810045538/nk2071Isup2.hkl
The title compound was synthesized by heating together under reflux for 10 minutes, 1 mmol quantities of 4-carbamoylpiperidine (isonipecotamide) and acetic acid in 50 ml of 80% methanol–water. After concentration to ca 30 ml, partial room temperature evaporation of the hot-filtered solution gave colourless plates of (I) (m.p. 409 K) from which a specimen was cleaved for the X-ray analysis.
Hydrogen atoms involved in hydrogen-bonding interactions were located by difference methods and their positional and isotropic displacement parameters were refined. The N–H bond distance range is 0.899 (17)–0.949 (18) Å and the water O–H distances are 0.82 (2) and 0.92 (2) Å. Other H-atoms were included in the
at calculated positions [C–H = 0.96–0.97 Å and with Uiso(H) = 1.2Ueq(C), using a riding-model approximation.The amide 4-carbamoylpiperidine (isonipecotamide, INIPA) has proved to be a particularly useful synthon for the construction of crystalline salts with a range of aromatic
enabling their (Smith & Wermuth, 2010a, 2010b). The structure of the 2:1 INIPA salt of biphenyl-4,4'-disulfonic acid has also been reported (Smith et al., 2010), and all reported compounds, prepared in aqueous ethanolic solution, have been anhydrous. No structures with aliphatic acids have previously been reported. However, our reaction of isonipecotamide with acetic acid in aqueous methanolic solution gave the title compound, the hydrate C6H13N2O+ C2H3O2-. H2O, (I) and the structure is reported here.With (I) (Fig. 1) the amide H atoms of the cations form centrosymetric cyclic hydrogen-bonding associations which incorporate two water molecules [graph set R24(8) (Etter et al., 1990)], These are conjoint with cyclic water-bridged amide–amide associations [R44(12)] and larger R44(20) associations also involving the water molecule and the acetate anions (Table 1). These acetate groups bridge the cations through the piperidinium H donor atoms, giving an overall three-dimensional framework structure (Fig. 2).
For structural data on isonipecotamide salts, see: Smith et al. (2010); Smith & Wermuth (2010a,b). For graph-set motifs, see: Etter et al. (1990).
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) within WinGX (Farrugia, 1999); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. Molecular configuration and atom naming scheme for the three INIPA cation the acetate anion and the water molecule of solvation in (I). Inter-species hydrogen bonds are shown as dashed lines and displacement ellipsoids are drawn at the 40% probability level. | |
Fig. 2. The three-dimensional hydrogen-bonded framework structure of (I) viewed down the approximate b cell direction showing the cyclic R24(8), R44(12) and R44(20) hydrogen-bonding interactions in (I). Non-associative H atoms are omitted. For symmetry codes, see Table 1. |
C6H13N2O+·C2H3O2−·H2O | Z = 2 |
Mr = 206.24 | F(000) = 224 |
Triclinic, P1 | Dx = 1.291 Mg m−3 |
Hall symbol: -P 1 | Melting point: 409 K |
a = 5.8219 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 7.7675 (3) Å | Cell parameters from 3330 reflections |
c = 12.4022 (5) Å | θ = 3.4–28.8° |
α = 81.088 (4)° | µ = 0.10 mm−1 |
β = 78.763 (4)° | T = 200 K |
γ = 76.202 (4)° | Plate, colourless |
V = 530.75 (4) Å3 | 0.40 × 0.35 × 0.15 mm |
Oxford Diffraction Gemini-S Ultra CCD-detector diffractometer | 2087 independent reflections |
Radiation source: Enhance (Mo) X-ray source | 1602 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
Detector resolution: 16.977 pixels mm-1 | θmax = 26.0°, θmin = 3.4° |
ω scans | h = −7→7 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −9→9 |
Tmin = 0.962, Tmax = 0.980 | l = −15→15 |
6385 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.105 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.93 | w = 1/[σ2(Fo2) + (0.0733P)2 + 0.0214P] where P = (Fo2 + 2Fc2)/3 |
2087 reflections | (Δ/σ)max < 0.001 |
151 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C6H13N2O+·C2H3O2−·H2O | γ = 76.202 (4)° |
Mr = 206.24 | V = 530.75 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.8219 (2) Å | Mo Kα radiation |
b = 7.7675 (3) Å | µ = 0.10 mm−1 |
c = 12.4022 (5) Å | T = 200 K |
α = 81.088 (4)° | 0.40 × 0.35 × 0.15 mm |
β = 78.763 (4)° |
Oxford Diffraction Gemini-S Ultra CCD-detector diffractometer | 2087 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 1602 reflections with I > 2σ(I) |
Tmin = 0.962, Tmax = 0.980 | Rint = 0.021 |
6385 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.105 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.93 | Δρmax = 0.20 e Å−3 |
2087 reflections | Δρmin = −0.19 e Å−3 |
151 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O41A | 0.48609 (16) | 0.38864 (13) | 0.35243 (9) | 0.0344 (3) | |
N1A | 0.9204 (2) | 0.82745 (15) | 0.19803 (10) | 0.0274 (4) | |
N41A | 0.7954 (2) | 0.21185 (16) | 0.42814 (10) | 0.0297 (4) | |
C2A | 0.9917 (3) | 0.67001 (19) | 0.13552 (11) | 0.0290 (4) | |
C3A | 0.8415 (2) | 0.53343 (18) | 0.18703 (11) | 0.0264 (4) | |
C4A | 0.8642 (2) | 0.47820 (17) | 0.30875 (11) | 0.0223 (4) | |
C5A | 0.8010 (3) | 0.64377 (18) | 0.37045 (11) | 0.0283 (4) | |
C6A | 0.9525 (3) | 0.77742 (19) | 0.31557 (12) | 0.0319 (5) | |
C41A | 0.6994 (2) | 0.35378 (17) | 0.36412 (11) | 0.0236 (4) | |
O11 | 1.43436 (17) | −0.04485 (13) | 0.19784 (8) | 0.0320 (3) | |
O12 | 1.14721 (18) | 0.09626 (14) | 0.10165 (9) | 0.0395 (4) | |
C1 | 1.3462 (2) | 0.08082 (17) | 0.12972 (11) | 0.0246 (4) | |
C2 | 1.4884 (3) | 0.2219 (2) | 0.08190 (13) | 0.0375 (5) | |
O1W | 1.31002 (18) | 0.08400 (15) | 0.40367 (9) | 0.0314 (3) | |
H4A | 1.03030 | 0.41690 | 0.31380 | 0.0270* | |
H11A | 1.005 (3) | 0.917 (2) | 0.1664 (15) | 0.050 (5)* | |
H12A | 0.757 (3) | 0.882 (2) | 0.1956 (14) | 0.043 (5)* | |
H21A | 1.16000 | 0.61660 | 0.13610 | 0.0350* | |
H22A | 0.96950 | 0.70700 | 0.05920 | 0.0350* | |
H31A | 0.89420 | 0.42910 | 0.14720 | 0.0320* | |
H32A | 0.67480 | 0.58390 | 0.18070 | 0.0320* | |
H41A | 0.958 (3) | 0.178 (2) | 0.4274 (13) | 0.036 (4)* | |
H42A | 0.701 (3) | 0.138 (2) | 0.4646 (14) | 0.045 (5)* | |
H51A | 0.63270 | 0.69920 | 0.37160 | 0.0340* | |
H52A | 0.82710 | 0.60850 | 0.44640 | 0.0340* | |
H61A | 0.90520 | 0.88300 | 0.35420 | 0.0380* | |
H62A | 1.12010 | 0.72560 | 0.31940 | 0.0380* | |
H21 | 1.42940 | 0.28690 | 0.01690 | 0.0450* | |
H22 | 1.65450 | 0.16610 | 0.06270 | 0.0450* | |
H23 | 1.47180 | 0.30250 | 0.13570 | 0.0450* | |
H11W | 1.355 (4) | 0.031 (3) | 0.3388 (19) | 0.069 (7)* | |
H12W | 1.368 (4) | 0.175 (3) | 0.3891 (17) | 0.062 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O41A | 0.0236 (5) | 0.0304 (6) | 0.0475 (6) | −0.0104 (4) | −0.0061 (4) | 0.0086 (5) |
N1A | 0.0228 (6) | 0.0200 (6) | 0.0383 (7) | −0.0088 (5) | −0.0057 (5) | 0.0076 (5) |
N41A | 0.0279 (7) | 0.0236 (6) | 0.0349 (7) | −0.0100 (5) | −0.0026 (5) | 0.0083 (5) |
C2A | 0.0309 (7) | 0.0300 (8) | 0.0250 (7) | −0.0108 (6) | −0.0021 (6) | 0.0039 (6) |
C3A | 0.0310 (7) | 0.0259 (7) | 0.0235 (7) | −0.0116 (6) | −0.0025 (5) | −0.0007 (6) |
C4A | 0.0192 (6) | 0.0198 (6) | 0.0269 (7) | −0.0060 (5) | −0.0038 (5) | 0.0029 (5) |
C5A | 0.0345 (8) | 0.0271 (7) | 0.0247 (7) | −0.0124 (6) | −0.0020 (6) | −0.0016 (6) |
C6A | 0.0391 (8) | 0.0270 (8) | 0.0336 (8) | −0.0155 (6) | −0.0057 (6) | −0.0032 (6) |
C41A | 0.0239 (7) | 0.0202 (7) | 0.0256 (7) | −0.0065 (5) | −0.0007 (5) | −0.0008 (6) |
O11 | 0.0274 (5) | 0.0289 (5) | 0.0362 (6) | −0.0050 (4) | −0.0060 (4) | 0.0061 (5) |
O12 | 0.0333 (6) | 0.0339 (6) | 0.0535 (7) | −0.0167 (5) | −0.0175 (5) | 0.0165 (5) |
C1 | 0.0250 (7) | 0.0227 (7) | 0.0257 (7) | −0.0074 (5) | −0.0012 (5) | −0.0015 (6) |
C2 | 0.0368 (8) | 0.0335 (8) | 0.0450 (9) | −0.0182 (7) | −0.0080 (7) | 0.0054 (7) |
O1W | 0.0325 (6) | 0.0304 (6) | 0.0324 (6) | −0.0149 (5) | −0.0066 (4) | 0.0073 (5) |
O41A—C41A | 1.2386 (16) | C4A—C41A | 1.5186 (18) |
O11—C1 | 1.2667 (16) | C5A—C6A | 1.518 (2) |
O12—C1 | 1.2473 (17) | C2A—H21A | 0.9700 |
O1W—H12W | 0.84 (2) | C2A—H22A | 0.9700 |
O1W—H11W | 0.92 (2) | C3A—H32A | 0.9700 |
N1A—C6A | 1.4856 (19) | C3A—H31A | 0.9700 |
N1A—C2A | 1.4816 (18) | C4A—H4A | 0.9800 |
N41A—C41A | 1.3289 (18) | C5A—H51A | 0.9700 |
N1A—H12A | 0.949 (18) | C5A—H52A | 0.9700 |
N1A—H11A | 0.940 (17) | C6A—H62A | 0.9700 |
N41A—H41A | 0.919 (18) | C6A—H61A | 0.9700 |
N41A—H42A | 0.899 (17) | C1—C2 | 1.509 (2) |
C2A—C3A | 1.521 (2) | C2—H23 | 0.9600 |
C3A—C4A | 1.5266 (19) | C2—H21 | 0.9600 |
C4A—C5A | 1.5311 (19) | C2—H22 | 0.9600 |
H11W—O1W—H12W | 104 (2) | C2A—C3A—H32A | 109.00 |
C2A—N1A—C6A | 111.60 (11) | C4A—C3A—H32A | 109.00 |
H11A—N1A—H12A | 104.9 (14) | H31A—C3A—H32A | 108.00 |
C6A—N1A—H11A | 109.2 (11) | C4A—C3A—H31A | 109.00 |
C2A—N1A—H11A | 112.5 (10) | C5A—C4A—H4A | 109.00 |
C2A—N1A—H12A | 109.7 (10) | C41A—C4A—H4A | 109.00 |
C6A—N1A—H12A | 108.8 (10) | C3A—C4A—H4A | 109.00 |
C41A—N41A—H42A | 118.4 (11) | C4A—C5A—H51A | 109.00 |
C41A—N41A—H41A | 121.8 (10) | C6A—C5A—H51A | 109.00 |
H41A—N41A—H42A | 119.1 (15) | C6A—C5A—H52A | 109.00 |
N1A—C2A—C3A | 110.23 (12) | C4A—C5A—H52A | 109.00 |
C2A—C3A—C4A | 110.91 (11) | H51A—C5A—H52A | 108.00 |
C3A—C4A—C41A | 111.67 (10) | N1A—C6A—H62A | 110.00 |
C5A—C4A—C41A | 108.66 (11) | C5A—C6A—H61A | 110.00 |
C3A—C4A—C5A | 109.87 (11) | C5A—C6A—H62A | 110.00 |
C4A—C5A—C6A | 111.11 (12) | H61A—C6A—H62A | 108.00 |
N1A—C6A—C5A | 109.84 (13) | N1A—C6A—H61A | 110.00 |
O41A—C41A—C4A | 120.90 (12) | O11—C1—O12 | 123.79 (12) |
O41A—C41A—N41A | 122.94 (12) | O11—C1—C2 | 117.89 (12) |
N41A—C41A—C4A | 116.11 (11) | O12—C1—C2 | 118.31 (12) |
N1A—C2A—H21A | 110.00 | C1—C2—H22 | 109.00 |
C3A—C2A—H21A | 110.00 | C1—C2—H23 | 109.00 |
C3A—C2A—H22A | 110.00 | C1—C2—H21 | 109.00 |
H21A—C2A—H22A | 108.00 | H21—C2—H23 | 109.00 |
N1A—C2A—H22A | 110.00 | H22—C2—H23 | 109.00 |
C2A—C3A—H31A | 109.00 | H21—C2—H22 | 109.00 |
C6A—N1A—C2A—C3A | 59.57 (16) | C41A—C4A—C5A—C6A | −177.38 (12) |
C2A—N1A—C6A—C5A | −59.60 (16) | C3A—C4A—C41A—O41A | −47.52 (17) |
N1A—C2A—C3A—C4A | −56.87 (15) | C3A—C4A—C41A—N41A | 135.05 (12) |
C2A—C3A—C4A—C5A | 54.57 (15) | C5A—C4A—C41A—O41A | 73.82 (16) |
C2A—C3A—C4A—C41A | 175.21 (11) | C5A—C4A—C41A—N41A | −103.61 (14) |
C3A—C4A—C5A—C6A | −54.94 (16) | C4A—C5A—C6A—N1A | 57.10 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H11A···O12i | 0.940 (17) | 1.793 (17) | 2.7311 (16) | 175.8 (17) |
N1A—H12A···O11ii | 0.949 (18) | 1.824 (18) | 2.7666 (16) | 171.8 (14) |
N41A—H41A···O1W | 0.919 (18) | 1.984 (18) | 2.8939 (17) | 170.2 (15) |
N41A—H42A···O1Wiii | 0.899 (17) | 2.188 (16) | 2.9491 (16) | 142.1 (15) |
O1W—H11W···O11 | 0.92 (2) | 1.87 (2) | 2.7871 (15) | 172 (2) |
O1W—H12W···O41Aiv | 0.84 (2) | 1.90 (2) | 2.7370 (15) | 177 (2) |
C2A—H22A···O12v | 0.97 | 2.42 | 3.3428 (18) | 158 |
Symmetry codes: (i) x, y+1, z; (ii) x−1, y+1, z; (iii) −x+2, −y, −z+1; (iv) x+1, y, z; (v) −x+2, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C6H13N2O+·C2H3O2−·H2O |
Mr | 206.24 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 200 |
a, b, c (Å) | 5.8219 (2), 7.7675 (3), 12.4022 (5) |
α, β, γ (°) | 81.088 (4), 78.763 (4), 76.202 (4) |
V (Å3) | 530.75 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.40 × 0.35 × 0.15 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini-S Ultra CCD-detector |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.962, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6385, 2087, 1602 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.105, 0.93 |
No. of reflections | 2087 |
No. of parameters | 151 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), SIR92 (Altomare et al., 1994), SHELXL97 (Sheldrick, 2008) within WinGX (Farrugia, 1999), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H11A···O12i | 0.940 (17) | 1.793 (17) | 2.7311 (16) | 175.8 (17) |
N1A—H12A···O11ii | 0.949 (18) | 1.824 (18) | 2.7666 (16) | 171.8 (14) |
N41A—H41A···O1W | 0.919 (18) | 1.984 (18) | 2.8939 (17) | 170.2 (15) |
N41A—H42A···O1Wiii | 0.899 (17) | 2.188 (16) | 2.9491 (16) | 142.1 (15) |
O1W—H11W···O11 | 0.92 (2) | 1.87 (2) | 2.7871 (15) | 172 (2) |
O1W—H12W···O41Aiv | 0.84 (2) | 1.90 (2) | 2.7370 (15) | 177 (2) |
Symmetry codes: (i) x, y+1, z; (ii) x−1, y+1, z; (iii) −x+2, −y, −z+1; (iv) x+1, y, z. |
Acknowledgements
The authors acknowledge financial support from the Australian Research Council, the Faculty of Science and Technology, Queensland University of Technology and the School of Biomolecular and Physical Sciences, Griffith University.
References
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The amide 4-carbamoylpiperidine (isonipecotamide, INIPA) has proved to be a particularly useful synthon for the construction of crystalline salts with a range of aromatic carboxylic acids, enabling their structure determination (Smith & Wermuth, 2010a, 2010b). The structure of the 2:1 INIPA salt of biphenyl-4,4'-disulfonic acid has also been reported (Smith et al., 2010), and all reported compounds, prepared in aqueous ethanolic solution, have been anhydrous. No structures with aliphatic acids have previously been reported. However, our reaction of isonipecotamide with acetic acid in aqueous methanolic solution gave the title compound, the hydrate C6H13N2O+ C2H3O2-. H2O, (I) and the structure is reported here.
With (I) (Fig. 1) the amide H atoms of the cations form centrosymetric cyclic hydrogen-bonding associations which incorporate two water molecules [graph set R24(8) (Etter et al., 1990)], These are conjoint with cyclic water-bridged amide–amide associations [R44(12)] and larger R44(20) associations also involving the water molecule and the acetate anions (Table 1). These acetate groups bridge the cations through the piperidinium H donor atoms, giving an overall three-dimensional framework structure (Fig. 2).