metal-organic compounds
Bis(2,6-dihydroxybenzoato-κ2O1,O1′)(nitrato-κ2O,O′)bis(1,10-phenanthroline-κ2N,N′)gadolinium(III)
aCollege of Materials Science and Engineering, China Jiliang University, Hangzhou 310018, People's Republic of China
*Correspondence e-mail: jin_hongxiao@yahoo.com.cn
In the mononuclear title complex, [Gd(C7H5O3)2(NO3)(C12H8N2)2], the Gd atom is in a pseudo-bicapped square-antiprismatic geometry formed by four N atoms from two chelating 1,10-phenanthroline (phen) ligands and by six O atoms, four from two 2,6-dihydroxybenzoate (DHB) ligands and the other two from a nitrate anion. π–π stacking interactions between phen–DHB [centroid–centroid distances = 3.5334 (18) and 3.8414 (16) Å] and phen–phen [face-to-face separation = 3.4307 (17) Å] ligands of adjacent complex molecules stabilize the Intramolecular O—H⋯O hydrogen bonds are observed in the DHB ligands.
Related literature
For background to the complexation of Gd(III) ions with multidentate ligands with O- and N-donors, see: Kido & Okamoto (2002); Lauffer (1990). For related structures, see: Ma et al. (2010); Wang et al. (2008); Xia et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2006); cell CrysAlis PRO CCD; data reduction: CrysAlis PRO RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Berndt, 1999); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810047124/pk2280sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810047124/pk2280Isup2.hkl
Each reagent was commercially available and of analytical grade. GdNO3.6H2O (0.226 g, 0.5 mmol), 2, 6-dihydroxybenzoic acid (0.074 g 0.5 mmol), 1, 10-phenanthroline (0.090 g, 0.5 mmol) and NaHCO3 (0.042 g, 0.5 mmol) were dissolved in water-ethanol solution (10 ml, 5:5). The solution was refluxed for 4 h, and filtered after cooling to room temperature. Orange single crystals were obtained from the filtrate after 1 d.
H atoms were positioned geometrically (C—H = 0.93 Å and O—H = 0.82 Å) and refined as riding, with Uiso (H) = 1.2Ueq (C) and Uiso(H) = 1.5Ueq (O). The displacement parameters of N atom in nitrate and one O atom in DHB were restrained to be equal, while one O atom and N atom in nitrate were restrained to be approximately isotropic.
The chemistry of lanthanide-based metal-organic frameworks is currently of great interest because of their unusual coordination characteristics and optical and magnetic properties. The complexation of gadolinium (III) ions with multidentate ligands with O– and N-donors, has received great attention because of its relevance in biomedical applications as
(MRI) agents (Kido & Okamoto, 2002; Lauffer, 1990). Herein, we report on the preparation and the single-crystal X-ray structure behavior of the novel mononuclear mixed-ligand complex [Gd(C12H8N2)2 (C7H8O3)2(NO3)].The mononuclear structure is shown in Fig. 1. The ten-coordinate geometry of the GdIII ion is completed by four 2, 6-dihydroxybenzoate (DHB) O atoms, four phenanthroline N atoms and two nitrate O atoms. In one
there are four complex molecules (Fig. 2).The complex forms a ten-coordinate pseudo-bicapped square antiprismatic structure in which the set of O5, O9, N2 and N4 and the set of O2, O6, N1 and N3 form two approximate squares, respectively. The ninth coordinate atom O1 and tenth coordinate atom O10 are above and under the two planes formed by O5, O9, N2 and N4 and of O2, O6, N1 and N3, respectively, and locate at bicapped positions. The O2–Gd–O9 is 175.388 (1)°, close to 180°. Because the coordinate O1 and O10 atoms are excluded by O5, O9, N2 and N4 (forming the above plane) and O2, O6, N1 and N3 (forming the plane beneath), respectively, the bond distances of GdIII–O1 (2.5673 (16) Å) and GdIII–O10 (2.6022 (17) Å) are correspondingly longer than those of GdIII–O2 (2.4781 (17) Å) and GdIII–O9 (2.5039 (17) Å), respectively.
π··· π stacking is observed in the (Fig. 2). The centroid-centroid distances between the phen and DHB are 3.5334 (18) and 3.8414 (16) Å, while the face-to-face separation between parallel phen ligands is 3.4307 (17) Å.
Intramolecular O–H···O hydrogen bonds are observed in the DHB ligands (Fig. 1 & Table 1).
For background to the complexation of gadolinium (III) ions with multidentate ligands with O- and N-donors see: Kido & Okamoto (2002); Lauffer (1990). For related structures, see: Ma et al. (2010); Wang et al. (2008); Xia et al. (2007).
Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2006); cell
CrysAlis PRO CCD (Oxford Diffraction, 2006); data reduction: CrysAlis PRO RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Berndt, 1999); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Gd(C7H5O3)2(NO3)(C12H8N2)2] | F(000) = 1764 |
Mr = 885.89 | Dx = 1.735 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 11955 reflections |
a = 11.1623 (2) Å | θ = 2.9–29.1° |
b = 26.7666 (4) Å | µ = 2.03 mm−1 |
c = 14.2979 (4) Å | T = 298 K |
β = 127.445 (1)° | Block, orange |
V = 3391.60 (12) Å3 | 0.46 × 0.42 × 0.40 mm |
Z = 4 |
Oxford Diffraction Gemini S Ultra diffractometer | 5979 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 4815 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
Detector resolution: 15.9 pixels mm-1 | θmax = 25.0°, θmin = 2.9° |
ω scans | h = −13→13 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) | k = −31→31 |
Tmin = 0.455, Tmax = 0.497 | l = −17→15 |
18394 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.021 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.043 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.020P)2] where P = (Fo2 + 2Fc2)/3 |
5979 reflections | (Δ/σ)max = 0.001 |
496 parameters | Δρmax = 0.46 e Å−3 |
12 restraints | Δρmin = −0.47 e Å−3 |
[Gd(C7H5O3)2(NO3)(C12H8N2)2] | V = 3391.60 (12) Å3 |
Mr = 885.89 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.1623 (2) Å | µ = 2.03 mm−1 |
b = 26.7666 (4) Å | T = 298 K |
c = 14.2979 (4) Å | 0.46 × 0.42 × 0.40 mm |
β = 127.445 (1)° |
Oxford Diffraction Gemini S Ultra diffractometer | 5979 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) | 4815 reflections with I > 2σ(I) |
Tmin = 0.455, Tmax = 0.497 | Rint = 0.024 |
18394 measured reflections |
R[F2 > 2σ(F2)] = 0.021 | 12 restraints |
wR(F2) = 0.043 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.46 e Å−3 |
5979 reflections | Δρmin = −0.47 e Å−3 |
496 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Gd1 | 0.930008 (14) | 0.862284 (4) | 0.221059 (11) | 0.03241 (5) | |
O1 | 0.8890 (2) | 0.91866 (6) | 0.05856 (15) | 0.0451 (5) | |
O2 | 0.8450 (2) | 0.83835 (7) | 0.02180 (15) | 0.0443 (4) | |
O3 | 0.7536 (2) | 0.80218 (7) | −0.17849 (17) | 0.0606 (5) | |
H3 | 0.7812 | 0.8019 | −0.1106 | 0.091* | |
O4 | 0.8349 (3) | 0.97874 (7) | −0.1046 (2) | 0.0816 (7) | |
H4 | 0.8533 | 0.9705 | −0.0419 | 0.122* | |
O5 | 0.69658 (19) | 0.81249 (6) | 0.13465 (16) | 0.0434 (4) | |
O6 | 0.66669 (19) | 0.89321 (6) | 0.09915 (17) | 0.0505 (5) | |
O7 | 0.4812 (2) | 0.75919 (7) | 0.10366 (17) | 0.0542 (5) | |
H7 | 0.5652 | 0.7649 | 0.1220 | 0.081* | |
O8 | 0.4200 (2) | 0.93646 (8) | 0.0290 (2) | 0.0753 (7) | |
H8 | 0.5060 | 0.9337 | 0.0492 | 0.113* | |
O9 | 0.8459 (2) | 0.87228 (7) | 0.34724 (17) | 0.0506 (5) | |
O10 | 0.9519 (2) | 0.80131 (6) | 0.37257 (17) | 0.0492 (5) | |
O11 | 0.8610 (3) | 0.81841 (9) | 0.46695 (19) | 0.0817 (7) | |
N1 | 0.9754 (2) | 0.95435 (7) | 0.29187 (19) | 0.0368 (5) | |
N2 | 1.1640 (2) | 0.88032 (7) | 0.43955 (18) | 0.0357 (5) | |
N3 | 1.1797 (2) | 0.86803 (7) | 0.24844 (18) | 0.0375 (5) | |
N4 | 1.0554 (2) | 0.77981 (7) | 0.23851 (18) | 0.0355 (5) | |
N5 | 0.8865 (3) | 0.82976 (9) | 0.3979 (2) | 0.0470 (6) | |
C1 | 0.8820 (3) | 0.99069 (10) | 0.2201 (3) | 0.0471 (7) | |
H1 | 0.8063 | 0.9831 | 0.1414 | 0.057* | |
C2 | 0.8935 (4) | 1.03981 (10) | 0.2589 (3) | 0.0534 (8) | |
H2 | 0.8261 | 1.0641 | 0.2065 | 0.064* | |
C3 | 1.0030 (4) | 1.05157 (10) | 0.3726 (3) | 0.0517 (8) | |
H3A | 1.0116 | 1.0841 | 0.3989 | 0.062* | |
C4 | 1.1037 (3) | 1.01476 (9) | 0.4510 (3) | 0.0407 (7) | |
C5 | 1.0847 (3) | 0.96619 (9) | 0.4060 (2) | 0.0343 (6) | |
C6 | 1.2220 (3) | 1.02442 (10) | 0.5721 (3) | 0.0510 (8) | |
H6 | 1.2346 | 1.0566 | 0.6013 | 0.061* | |
C7 | 1.3153 (3) | 0.98818 (11) | 0.6447 (3) | 0.0530 (8) | |
H7A | 1.3911 | 0.9957 | 0.7234 | 0.064* | |
C8 | 1.3011 (3) | 0.93797 (10) | 0.6037 (2) | 0.0403 (6) | |
C9 | 1.1850 (3) | 0.92708 (9) | 0.4844 (2) | 0.0347 (6) | |
C10 | 1.3956 (3) | 0.89923 (11) | 0.6760 (3) | 0.0496 (7) | |
H10 | 1.4723 | 0.9051 | 0.7554 | 0.060* | |
C11 | 1.3754 (3) | 0.85270 (10) | 0.6303 (3) | 0.0475 (7) | |
H11 | 1.4387 | 0.8265 | 0.6774 | 0.057* | |
C12 | 1.2586 (3) | 0.84516 (10) | 0.5121 (2) | 0.0421 (7) | |
H12 | 1.2458 | 0.8132 | 0.4818 | 0.050* | |
C13 | 1.2402 (3) | 0.91126 (10) | 0.2505 (2) | 0.0475 (7) | |
H13 | 1.1814 | 0.9400 | 0.2262 | 0.057* | |
C14 | 1.3874 (3) | 0.91551 (12) | 0.2872 (3) | 0.0566 (8) | |
H14 | 1.4255 | 0.9465 | 0.2875 | 0.068* | |
C15 | 1.4749 (3) | 0.87395 (12) | 0.3226 (3) | 0.0565 (8) | |
H15 | 1.5739 | 0.8765 | 0.3485 | 0.068* | |
C16 | 1.4167 (3) | 0.82720 (11) | 0.3202 (2) | 0.0436 (7) | |
C17 | 1.2668 (3) | 0.82630 (9) | 0.2817 (2) | 0.0360 (6) | |
C18 | 1.1987 (3) | 0.77906 (9) | 0.2718 (2) | 0.0350 (6) | |
C19 | 1.2788 (3) | 0.73454 (10) | 0.2958 (2) | 0.0412 (7) | |
C20 | 1.4327 (3) | 0.73749 (12) | 0.3397 (2) | 0.0541 (8) | |
H20 | 1.4884 | 0.7082 | 0.3602 | 0.065* | |
C21 | 1.4990 (3) | 0.78140 (12) | 0.3522 (2) | 0.0542 (8) | |
H21 | 1.5998 | 0.7821 | 0.3820 | 0.065* | |
C22 | 1.2026 (3) | 0.68959 (10) | 0.2755 (2) | 0.0482 (7) | |
H22 | 1.2507 | 0.6593 | 0.2871 | 0.058* | |
C23 | 1.0593 (3) | 0.69013 (10) | 0.2392 (2) | 0.0478 (7) | |
H23 | 1.0075 | 0.6604 | 0.2246 | 0.057* | |
C24 | 0.9899 (3) | 0.73592 (10) | 0.2237 (2) | 0.0435 (7) | |
H24 | 0.8926 | 0.7358 | 0.2020 | 0.052* | |
C25 | 0.8459 (3) | 0.88219 (10) | −0.0120 (2) | 0.0375 (6) | |
C26 | 0.7966 (3) | 0.89003 (9) | −0.1327 (2) | 0.0357 (6) | |
C27 | 0.7529 (3) | 0.84952 (10) | −0.2109 (2) | 0.0420 (7) | |
C28 | 0.7051 (3) | 0.85738 (11) | −0.3242 (3) | 0.0534 (8) | |
H28 | 0.6756 | 0.8305 | −0.3752 | 0.064* | |
C29 | 0.7015 (3) | 0.90493 (13) | −0.3609 (3) | 0.0605 (8) | |
H29 | 0.6690 | 0.9100 | −0.4375 | 0.073* | |
C30 | 0.7443 (4) | 0.94522 (12) | −0.2884 (3) | 0.0633 (9) | |
H30 | 0.7408 | 0.9772 | −0.3154 | 0.076* | |
C31 | 0.7930 (3) | 0.93800 (11) | −0.1744 (3) | 0.0512 (7) | |
C32 | 0.6141 (3) | 0.85113 (10) | 0.1004 (2) | 0.0422 (7) | |
C33 | 0.4596 (3) | 0.84803 (9) | 0.0660 (2) | 0.0386 (6) | |
C34 | 0.3692 (3) | 0.89083 (11) | 0.0327 (2) | 0.0508 (7) | |
C35 | 0.2258 (3) | 0.88797 (13) | 0.0027 (3) | 0.0600 (8) | |
H35 | 0.1660 | 0.9164 | −0.0201 | 0.072* | |
C36 | 0.1739 (3) | 0.84251 (13) | 0.0071 (3) | 0.0583 (8) | |
H36 | 0.0775 | 0.8406 | −0.0132 | 0.070* | |
C37 | 0.2579 (3) | 0.79927 (12) | 0.0404 (2) | 0.0520 (8) | |
H37 | 0.2190 | 0.7690 | 0.0427 | 0.062* | |
C38 | 0.4019 (3) | 0.80189 (11) | 0.0705 (2) | 0.0426 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Gd1 | 0.03358 (7) | 0.02755 (7) | 0.03929 (8) | 0.00033 (6) | 0.02381 (6) | −0.00046 (6) |
O1 | 0.0562 (12) | 0.0395 (11) | 0.0428 (12) | −0.0024 (9) | 0.0317 (10) | −0.0020 (9) |
O2 | 0.0514 (12) | 0.0361 (11) | 0.0439 (12) | −0.0019 (9) | 0.0282 (10) | 0.0033 (9) |
O3 | 0.0691 (14) | 0.0414 (12) | 0.0488 (13) | −0.0016 (10) | 0.0242 (11) | −0.0072 (10) |
O4 | 0.141 (2) | 0.0415 (13) | 0.0582 (15) | −0.0182 (14) | 0.0586 (16) | −0.0043 (11) |
O5 | 0.0347 (10) | 0.0386 (11) | 0.0571 (13) | 0.0035 (9) | 0.0281 (10) | 0.0013 (9) |
O6 | 0.0426 (11) | 0.0421 (12) | 0.0640 (14) | 0.0030 (9) | 0.0310 (11) | 0.0097 (9) |
O7 | 0.0449 (11) | 0.0497 (12) | 0.0694 (15) | 0.0009 (10) | 0.0354 (12) | 0.0074 (10) |
O8 | 0.0592 (14) | 0.0560 (14) | 0.102 (2) | 0.0174 (12) | 0.0444 (14) | 0.0139 (13) |
O9 | 0.0563 (11) | 0.0455 (12) | 0.0608 (13) | 0.0035 (9) | 0.0412 (10) | −0.0022 (9) |
O10 | 0.0541 (12) | 0.0383 (11) | 0.0579 (13) | 0.0010 (9) | 0.0354 (11) | 0.0016 (9) |
O11 | 0.0799 (16) | 0.124 (2) | 0.0590 (16) | −0.0099 (15) | 0.0517 (14) | 0.0115 (14) |
N1 | 0.0465 (13) | 0.0265 (11) | 0.0444 (15) | 0.0023 (10) | 0.0312 (12) | 0.0038 (10) |
N2 | 0.0358 (12) | 0.0318 (12) | 0.0413 (13) | 0.0038 (10) | 0.0244 (11) | 0.0025 (10) |
N3 | 0.0377 (12) | 0.0396 (13) | 0.0400 (13) | −0.0057 (10) | 0.0261 (11) | −0.0030 (10) |
N4 | 0.0362 (12) | 0.0331 (12) | 0.0399 (14) | −0.0023 (10) | 0.0244 (11) | −0.0025 (10) |
N5 | 0.0413 (12) | 0.0588 (15) | 0.0441 (14) | −0.0096 (11) | 0.0275 (11) | −0.0031 (11) |
C1 | 0.0557 (18) | 0.0389 (16) | 0.054 (2) | 0.0056 (14) | 0.0374 (17) | 0.0061 (14) |
C2 | 0.074 (2) | 0.0281 (16) | 0.077 (3) | 0.0104 (15) | 0.056 (2) | 0.0109 (15) |
C3 | 0.075 (2) | 0.0262 (15) | 0.083 (3) | −0.0060 (15) | 0.063 (2) | −0.0072 (16) |
C4 | 0.0507 (17) | 0.0308 (15) | 0.062 (2) | −0.0094 (13) | 0.0457 (17) | −0.0074 (14) |
C5 | 0.0390 (15) | 0.0303 (14) | 0.0474 (18) | −0.0039 (12) | 0.0334 (15) | −0.0031 (12) |
C6 | 0.061 (2) | 0.0370 (17) | 0.076 (2) | −0.0197 (15) | 0.052 (2) | −0.0204 (16) |
C7 | 0.0485 (18) | 0.057 (2) | 0.059 (2) | −0.0200 (16) | 0.0356 (17) | −0.0208 (17) |
C8 | 0.0352 (15) | 0.0462 (17) | 0.0482 (18) | −0.0081 (13) | 0.0299 (15) | −0.0077 (14) |
C9 | 0.0380 (15) | 0.0339 (15) | 0.0472 (18) | −0.0058 (12) | 0.0336 (15) | −0.0044 (12) |
C10 | 0.0332 (15) | 0.068 (2) | 0.0407 (18) | −0.0031 (14) | 0.0189 (14) | −0.0040 (15) |
C11 | 0.0393 (16) | 0.055 (2) | 0.0460 (19) | 0.0062 (14) | 0.0246 (15) | 0.0073 (14) |
C12 | 0.0449 (16) | 0.0393 (16) | 0.0453 (19) | 0.0035 (13) | 0.0291 (16) | 0.0007 (13) |
C13 | 0.0537 (18) | 0.0454 (17) | 0.0510 (19) | −0.0092 (14) | 0.0358 (16) | −0.0039 (14) |
C14 | 0.0531 (19) | 0.060 (2) | 0.061 (2) | −0.0240 (17) | 0.0367 (18) | −0.0091 (17) |
C15 | 0.0399 (17) | 0.083 (2) | 0.050 (2) | −0.0146 (17) | 0.0292 (16) | −0.0107 (17) |
C16 | 0.0357 (15) | 0.0623 (19) | 0.0350 (17) | −0.0046 (14) | 0.0226 (14) | −0.0050 (14) |
C17 | 0.0355 (14) | 0.0444 (16) | 0.0291 (15) | −0.0008 (13) | 0.0203 (13) | −0.0025 (12) |
C18 | 0.0373 (15) | 0.0391 (15) | 0.0315 (15) | 0.0014 (12) | 0.0224 (13) | −0.0012 (12) |
C19 | 0.0457 (17) | 0.0467 (17) | 0.0358 (17) | 0.0133 (14) | 0.0271 (15) | 0.0033 (13) |
C20 | 0.0507 (19) | 0.064 (2) | 0.048 (2) | 0.0203 (16) | 0.0303 (17) | 0.0051 (16) |
C21 | 0.0359 (16) | 0.079 (2) | 0.0451 (19) | 0.0125 (16) | 0.0234 (15) | 0.0017 (16) |
C22 | 0.065 (2) | 0.0359 (16) | 0.0473 (19) | 0.0130 (15) | 0.0358 (17) | 0.0019 (13) |
C23 | 0.0609 (19) | 0.0329 (16) | 0.0479 (19) | 0.0004 (14) | 0.0321 (17) | −0.0024 (13) |
C24 | 0.0462 (16) | 0.0359 (16) | 0.0477 (19) | −0.0007 (13) | 0.0282 (15) | −0.0019 (13) |
C25 | 0.0289 (14) | 0.0428 (16) | 0.0396 (17) | −0.0007 (12) | 0.0201 (13) | −0.0018 (14) |
C26 | 0.0284 (13) | 0.0377 (15) | 0.0392 (16) | 0.0025 (12) | 0.0196 (13) | 0.0011 (12) |
C27 | 0.0313 (14) | 0.0457 (18) | 0.0432 (18) | 0.0026 (12) | 0.0195 (14) | −0.0016 (13) |
C28 | 0.0468 (17) | 0.063 (2) | 0.0461 (19) | −0.0013 (16) | 0.0263 (16) | −0.0140 (16) |
C29 | 0.065 (2) | 0.076 (2) | 0.045 (2) | −0.0119 (18) | 0.0356 (18) | −0.0035 (18) |
C30 | 0.085 (2) | 0.057 (2) | 0.050 (2) | −0.0113 (18) | 0.042 (2) | 0.0047 (17) |
C31 | 0.062 (2) | 0.0495 (19) | 0.0443 (19) | −0.0095 (15) | 0.0333 (17) | −0.0050 (15) |
C32 | 0.0373 (15) | 0.0504 (19) | 0.0384 (17) | 0.0010 (14) | 0.0227 (14) | −0.0002 (13) |
C33 | 0.0311 (14) | 0.0488 (17) | 0.0330 (16) | 0.0065 (12) | 0.0180 (13) | 0.0033 (12) |
C34 | 0.0482 (18) | 0.054 (2) | 0.0454 (19) | 0.0092 (15) | 0.0258 (16) | 0.0042 (15) |
C35 | 0.0411 (18) | 0.080 (2) | 0.054 (2) | 0.0259 (17) | 0.0260 (16) | 0.0097 (17) |
C36 | 0.0330 (16) | 0.097 (3) | 0.0443 (19) | 0.0055 (17) | 0.0231 (16) | 0.0017 (17) |
C37 | 0.0391 (17) | 0.075 (2) | 0.0426 (19) | −0.0039 (16) | 0.0251 (15) | 0.0011 (15) |
C38 | 0.0367 (15) | 0.0589 (19) | 0.0315 (16) | 0.0004 (14) | 0.0203 (14) | 0.0005 (13) |
Gd1—O6 | 2.4764 (17) | C8—C10 | 1.389 (4) |
Gd1—O2 | 2.4781 (17) | C8—C9 | 1.409 (4) |
Gd1—O5 | 2.4854 (16) | C10—C11 | 1.360 (4) |
Gd1—O9 | 2.5039 (17) | C10—H10 | 0.9300 |
Gd1—N4 | 2.5433 (19) | C11—C12 | 1.384 (4) |
Gd1—O1 | 2.5673 (16) | C11—H11 | 0.9300 |
Gd1—N3 | 2.5728 (19) | C12—H12 | 0.9300 |
Gd1—N1 | 2.5943 (19) | C13—C14 | 1.392 (4) |
Gd1—O10 | 2.6022 (17) | C13—H13 | 0.9300 |
Gd1—N2 | 2.625 (2) | C14—C15 | 1.359 (4) |
Gd1—C32 | 2.847 (3) | C14—H14 | 0.9300 |
Gd1—C25 | 2.910 (3) | C15—C16 | 1.401 (4) |
O1—C25 | 1.270 (3) | C15—H15 | 0.9300 |
O2—C25 | 1.271 (3) | C16—C17 | 1.407 (3) |
O3—C27 | 1.347 (3) | C16—C21 | 1.430 (4) |
O3—H3 | 0.8201 | C17—C18 | 1.438 (3) |
O4—C31 | 1.355 (3) | C18—C19 | 1.402 (3) |
O4—H4 | 0.8201 | C19—C22 | 1.399 (4) |
O5—C32 | 1.268 (3) | C19—C20 | 1.428 (4) |
O6—C32 | 1.275 (3) | C20—C21 | 1.342 (4) |
O7—C38 | 1.343 (3) | C20—H20 | 0.9300 |
O7—H7 | 0.8199 | C21—H21 | 0.9300 |
O8—C34 | 1.361 (3) | C22—C23 | 1.348 (4) |
O8—H8 | 0.8201 | C22—H22 | 0.9300 |
O9—N5 | 1.275 (3) | C23—C24 | 1.394 (4) |
O10—N5 | 1.252 (3) | C23—H23 | 0.9300 |
O11—N5 | 1.220 (3) | C24—H24 | 0.9300 |
N1—C1 | 1.336 (3) | C25—C26 | 1.473 (3) |
N1—C5 | 1.353 (3) | C26—C31 | 1.406 (3) |
N2—C12 | 1.321 (3) | C26—C27 | 1.414 (3) |
N2—C9 | 1.360 (3) | C27—C28 | 1.380 (4) |
N3—C13 | 1.331 (3) | C28—C29 | 1.368 (4) |
N3—C17 | 1.363 (3) | C28—H28 | 0.9300 |
N4—C24 | 1.331 (3) | C29—C30 | 1.365 (4) |
N4—C18 | 1.364 (3) | C29—H29 | 0.9300 |
C1—C2 | 1.402 (3) | C30—C31 | 1.384 (4) |
C1—H1 | 0.9300 | C30—H30 | 0.9300 |
C2—C3 | 1.349 (4) | C32—C33 | 1.480 (3) |
C2—H2 | 0.9300 | C33—C34 | 1.405 (4) |
C3—C4 | 1.400 (4) | C33—C38 | 1.413 (3) |
C3—H3A | 0.9300 | C34—C35 | 1.385 (4) |
C4—C5 | 1.408 (3) | C35—C36 | 1.366 (4) |
C4—C6 | 1.424 (4) | C35—H35 | 0.9300 |
C5—C9 | 1.442 (3) | C36—C37 | 1.379 (4) |
C6—C7 | 1.338 (4) | C36—H36 | 0.9300 |
C6—H6 | 0.9300 | C37—C38 | 1.390 (3) |
C7—C8 | 1.436 (4) | C37—H37 | 0.9300 |
C7—H7A | 0.9300 | ||
O6—Gd1—O2 | 79.42 (6) | N1—C5—C9 | 118.2 (2) |
O6—Gd1—O5 | 52.59 (6) | C4—C5—C9 | 119.0 (2) |
O2—Gd1—O5 | 74.76 (6) | C7—C6—C4 | 121.4 (3) |
O6—Gd1—O9 | 70.53 (6) | C7—C6—H6 | 119.3 |
O2—Gd1—O9 | 143.80 (6) | C4—C6—H6 | 119.3 |
O5—Gd1—O9 | 71.11 (6) | C6—C7—C8 | 121.4 (3) |
O6—Gd1—N4 | 134.90 (6) | C6—C7—H7A | 119.3 |
O2—Gd1—N4 | 72.04 (6) | C8—C7—H7A | 119.3 |
O5—Gd1—N4 | 86.06 (6) | C10—C8—C9 | 118.0 (2) |
O9—Gd1—N4 | 116.56 (6) | C10—C8—C7 | 123.3 (3) |
O6—Gd1—O1 | 71.59 (6) | C9—C8—C7 | 118.7 (3) |
O2—Gd1—O1 | 51.57 (5) | N2—C9—C8 | 122.0 (2) |
O5—Gd1—O1 | 108.00 (6) | N2—C9—C5 | 118.1 (2) |
O9—Gd1—O1 | 130.59 (6) | C8—C9—C5 | 119.9 (2) |
N4—Gd1—O1 | 112.56 (6) | C11—C10—C8 | 119.8 (3) |
O6—Gd1—N3 | 143.09 (6) | C11—C10—H10 | 120.1 |
O2—Gd1—N3 | 79.18 (6) | C8—C10—H10 | 120.1 |
O5—Gd1—N3 | 144.99 (6) | C10—C11—C12 | 118.5 (3) |
O9—Gd1—N3 | 136.91 (6) | C10—C11—H11 | 120.7 |
N4—Gd1—N3 | 63.67 (6) | C12—C11—H11 | 120.7 |
O1—Gd1—N3 | 71.53 (6) | N2—C12—C11 | 124.4 (2) |
O6—Gd1—N1 | 79.85 (6) | N2—C12—H12 | 117.8 |
O2—Gd1—N1 | 122.79 (6) | C11—C12—H12 | 117.8 |
O5—Gd1—N1 | 126.90 (6) | N3—C13—C14 | 123.1 (3) |
O9—Gd1—N1 | 71.77 (6) | N3—C13—H13 | 118.5 |
N4—Gd1—N1 | 145.17 (7) | C14—C13—H13 | 118.5 |
O1—Gd1—N1 | 71.33 (6) | C15—C14—C13 | 119.3 (3) |
N3—Gd1—N1 | 86.98 (6) | C15—C14—H14 | 120.3 |
O6—Gd1—O10 | 105.44 (6) | C13—C14—H14 | 120.3 |
O2—Gd1—O10 | 124.86 (6) | C14—C15—C16 | 120.3 (3) |
O5—Gd1—O10 | 67.48 (6) | C14—C15—H15 | 119.8 |
O9—Gd1—O10 | 49.75 (6) | C16—C15—H15 | 119.8 |
N4—Gd1—O10 | 66.82 (6) | C15—C16—C17 | 116.6 (3) |
O1—Gd1—O10 | 175.38 (6) | C15—C16—C21 | 124.0 (3) |
N3—Gd1—O10 | 111.47 (6) | C17—C16—C21 | 119.4 (3) |
N1—Gd1—O10 | 111.94 (6) | N3—C17—C16 | 123.3 (2) |
O6—Gd1—N2 | 132.26 (6) | N3—C17—C18 | 117.6 (2) |
O2—Gd1—N2 | 145.49 (6) | C16—C17—C18 | 119.0 (2) |
O5—Gd1—N2 | 132.37 (6) | N4—C18—C19 | 122.5 (2) |
O9—Gd1—N2 | 70.16 (6) | N4—C18—C17 | 117.4 (2) |
N4—Gd1—N2 | 87.30 (6) | C19—C18—C17 | 120.2 (2) |
O1—Gd1—N2 | 118.02 (6) | C22—C19—C18 | 117.6 (2) |
N3—Gd1—N2 | 66.79 (6) | C22—C19—C20 | 123.8 (3) |
N1—Gd1—N2 | 62.87 (7) | C18—C19—C20 | 118.6 (3) |
O10—Gd1—N2 | 66.59 (6) | C21—C20—C19 | 121.7 (3) |
O6—Gd1—C32 | 26.57 (6) | C21—C20—H20 | 119.1 |
O2—Gd1—C32 | 78.98 (6) | C19—C20—H20 | 119.1 |
O5—Gd1—C32 | 26.43 (6) | C20—C21—C16 | 120.8 (3) |
O9—Gd1—C32 | 65.09 (7) | C20—C21—H21 | 119.6 |
N4—Gd1—C32 | 111.92 (7) | C16—C21—H21 | 119.6 |
O1—Gd1—C32 | 92.26 (7) | C23—C22—C19 | 120.0 (2) |
N3—Gd1—C32 | 157.93 (7) | C23—C22—H22 | 120.0 |
N1—Gd1—C32 | 102.26 (7) | C19—C22—H22 | 120.0 |
O10—Gd1—C32 | 83.90 (7) | C22—C23—C24 | 119.0 (3) |
N2—Gd1—C32 | 135.25 (7) | C22—C23—H23 | 120.5 |
O6—Gd1—C25 | 73.40 (6) | C24—C23—H23 | 120.5 |
O2—Gd1—C25 | 25.73 (6) | N4—C24—C23 | 123.6 (3) |
O5—Gd1—C25 | 91.04 (6) | N4—C24—H24 | 118.2 |
O9—Gd1—C25 | 143.56 (7) | C23—C24—H24 | 118.2 |
N4—Gd1—C25 | 92.66 (7) | O1—C25—O2 | 119.6 (2) |
O1—Gd1—C25 | 25.85 (6) | O1—C25—C26 | 120.8 (2) |
N3—Gd1—C25 | 74.25 (6) | O2—C25—C26 | 119.5 (2) |
N1—Gd1—C25 | 97.09 (7) | O1—C25—Gd1 | 61.84 (13) |
O10—Gd1—C25 | 150.44 (7) | O2—C25—Gd1 | 57.80 (13) |
N2—Gd1—C25 | 136.38 (6) | C26—C25—Gd1 | 176.71 (18) |
C32—Gd1—C25 | 84.65 (7) | C31—C26—C27 | 117.2 (2) |
C25—O1—Gd1 | 92.31 (15) | C31—C26—C25 | 121.4 (2) |
C25—O2—Gd1 | 96.46 (15) | C27—C26—C25 | 121.4 (2) |
C27—O3—H3 | 109.5 | O3—C27—C28 | 117.7 (2) |
C31—O4—H4 | 109.5 | O3—C27—C26 | 121.5 (2) |
C32—O5—Gd1 | 92.88 (15) | C28—C27—C26 | 120.8 (3) |
C32—O6—Gd1 | 93.12 (15) | C29—C28—C27 | 119.5 (3) |
C38—O7—H7 | 109.5 | C29—C28—H28 | 120.2 |
C34—O8—H8 | 109.5 | C27—C28—H28 | 120.2 |
N5—O9—Gd1 | 98.88 (13) | C30—C29—C28 | 121.9 (3) |
N5—O10—Gd1 | 94.79 (14) | C30—C29—H29 | 119.0 |
C1—N1—C5 | 117.8 (2) | C28—C29—H29 | 119.0 |
C1—N1—Gd1 | 121.05 (18) | C29—C30—C31 | 119.3 (3) |
C5—N1—Gd1 | 120.81 (15) | C29—C30—H30 | 120.3 |
C12—N2—C9 | 117.3 (2) | C31—C30—H30 | 120.3 |
C12—N2—Gd1 | 123.06 (17) | O4—C31—C30 | 117.9 (3) |
C9—N2—Gd1 | 119.48 (16) | O4—C31—C26 | 121.0 (2) |
C13—N3—C17 | 117.4 (2) | C30—C31—C26 | 121.1 (3) |
C13—N3—Gd1 | 122.94 (17) | O5—C32—O6 | 119.6 (2) |
C17—N3—Gd1 | 118.78 (15) | O5—C32—C33 | 120.5 (2) |
C24—N4—C18 | 117.2 (2) | O6—C32—C33 | 119.9 (2) |
C24—N4—Gd1 | 122.31 (16) | O5—C32—Gd1 | 60.70 (13) |
C18—N4—Gd1 | 120.37 (15) | O6—C32—Gd1 | 60.30 (13) |
O11—N5—O10 | 123.2 (3) | C33—C32—Gd1 | 166.12 (18) |
O11—N5—O9 | 120.3 (2) | C34—C33—C38 | 118.3 (2) |
O10—N5—O9 | 116.6 (2) | C34—C33—C32 | 121.3 (2) |
O11—N5—Gd1 | 175.9 (2) | C38—C33—C32 | 120.4 (2) |
O10—N5—Gd1 | 60.47 (12) | O8—C34—C35 | 117.9 (3) |
O9—N5—Gd1 | 56.11 (11) | O8—C34—C33 | 120.9 (2) |
N1—C1—C2 | 122.6 (3) | C35—C34—C33 | 121.1 (3) |
N1—C1—H1 | 118.7 | C36—C35—C34 | 118.5 (3) |
C2—C1—H1 | 118.7 | C36—C35—H35 | 120.7 |
C3—C2—C1 | 119.6 (3) | C34—C35—H35 | 120.7 |
C3—C2—H2 | 120.2 | C35—C36—C37 | 123.1 (3) |
C1—C2—H2 | 120.2 | C35—C36—H36 | 118.5 |
C2—C3—C4 | 119.9 (3) | C37—C36—H36 | 118.5 |
C2—C3—H3A | 120.0 | C36—C37—C38 | 118.7 (3) |
C4—C3—H3A | 120.0 | C36—C37—H37 | 120.7 |
C3—C4—C5 | 117.4 (3) | C38—C37—H37 | 120.7 |
C3—C4—C6 | 123.0 (3) | O7—C38—C37 | 117.1 (2) |
C5—C4—C6 | 119.6 (3) | O7—C38—C33 | 122.6 (2) |
N1—C5—C4 | 122.8 (2) | C37—C38—C33 | 120.3 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H7···O5 | 0.82 | 1.87 | 2.592 (2) | 147 |
O8—H8···O6 | 0.82 | 1.83 | 2.563 (3) | 148 |
O4—H4···O1 | 0.82 | 1.86 | 2.585 (3) | 147 |
O3—H3···O2 | 0.82 | 1.84 | 2.574 (3) | 148 |
Experimental details
Crystal data | |
Chemical formula | [Gd(C7H5O3)2(NO3)(C12H8N2)2] |
Mr | 885.89 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 11.1623 (2), 26.7666 (4), 14.2979 (4) |
β (°) | 127.445 (1) |
V (Å3) | 3391.60 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.03 |
Crystal size (mm) | 0.46 × 0.42 × 0.40 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini S Ultra |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) |
Tmin, Tmax | 0.455, 0.497 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18394, 5979, 4815 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.021, 0.043, 1.01 |
No. of reflections | 5979 |
No. of parameters | 496 |
No. of restraints | 12 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.46, −0.47 |
Computer programs: CrysAlis PRO CCD (Oxford Diffraction, 2006), CrysAlis PRO RED (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg & Berndt, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H7···O5 | 0.82 | 1.87 | 2.592 (2) | 146.9 |
O8—H8···O6 | 0.82 | 1.83 | 2.563 (3) | 148.2 |
O4—H4···O1 | 0.82 | 1.86 | 2.585 (3) | 147.2 |
O3—H3···O2 | 0.82 | 1.84 | 2.574 (3) | 147.5 |
Acknowledgements
The authors are grateful for financial support from the Natural Science Foundation of Zhejiang Province (project No. 2010 Y4100495).
References
Brandenburg, K. & Berndt, M. (1999). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Kido, J. & Okamoto, Y. (2002). Chem. Rev. 102, 2357–2393. Web of Science CrossRef PubMed CAS Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The chemistry of lanthanide-based metal-organic frameworks is currently of great interest because of their unusual coordination characteristics and optical and magnetic properties. The complexation of gadolinium (III) ions with multidentate ligands with O– and N-donors, has received great attention because of its relevance in biomedical applications as magnetic resonance imaging (MRI) agents (Kido & Okamoto, 2002; Lauffer, 1990). Herein, we report on the preparation and the single-crystal X-ray structure behavior of the novel mononuclear mixed-ligand complex [Gd(C12H8N2)2 (C7H8O3)2(NO3)].
The mononuclear structure is shown in Fig. 1. The ten-coordinate geometry of the GdIII ion is completed by four 2, 6-dihydroxybenzoate (DHB) O atoms, four phenanthroline N atoms and two nitrate O atoms. In one unit cell, there are four complex molecules (Fig. 2).
The complex forms a ten-coordinate pseudo-bicapped square antiprismatic structure in which the set of O5, O9, N2 and N4 and the set of O2, O6, N1 and N3 form two approximate squares, respectively. The ninth coordinate atom O1 and tenth coordinate atom O10 are above and under the two planes formed by O5, O9, N2 and N4 and of O2, O6, N1 and N3, respectively, and locate at bicapped positions. The O2–Gd–O9 is 175.388 (1)°, close to 180°. Because the coordinate O1 and O10 atoms are excluded by O5, O9, N2 and N4 (forming the above plane) and O2, O6, N1 and N3 (forming the plane beneath), respectively, the bond distances of GdIII–O1 (2.5673 (16) Å) and GdIII–O10 (2.6022 (17) Å) are correspondingly longer than those of GdIII–O2 (2.4781 (17) Å) and GdIII–O9 (2.5039 (17) Å), respectively.
π··· π stacking is observed in the crystal structure (Fig. 2). The centroid-centroid distances between the phen and DHB are 3.5334 (18) and 3.8414 (16) Å, while the face-to-face separation between parallel phen ligands is 3.4307 (17) Å.
Intramolecular O–H···O hydrogen bonds are observed in the DHB ligands (Fig. 1 & Table 1).