metal-organic compounds
Bis(2,3-diaminopyridinium) bis(μ-pyridine-2,6-dicarboxylato)-κ4O2,N,O6:O6;κ4O2:O2,N,O6-bis[aqua(pyridine-2,6-dicarboxylato-κ3O2,N,O6)bismuthate(III)] tetrahydrate
aFaculty of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran, bFaculty of Chemistry, Tarbiat Moallem University, 15614 Tehran, Iran, cDepartment of Chemistry, School of Sciences, Ferdowsi University of Mashhad, Mashhad 917791436, Iran, and dDepartment of Chemistry, Shahid Beheshti University, G. C., Evin, Tehran 1983963113, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
In the centrosymmetric dinuclear complex anion of the title compound, (C5H8N3)2[Bi2(C7H3NO4)4(H2O)2]·4H2O, the BiIII atom is eight-coordinated in an N2O6 environment and has a distorted bicapped trigonal–prismatic coordination environment. Extensive intermolecular O—H⋯O, N—H⋯O and weak C—H⋯O hydrogen bonds lead to the stability of the Interactions between one C—H group of the 2,3-diaminopyridinium [(2,3-dapyH)+] cation and the aromatic ring of the pyridine-2,6-dicarboxylate (pydc) ligand (C—H⋯centroid distance = 2.78 Å) and π–π interactions between the (2,3-dapyH)+ cations and between the (2,3-dapyH)+ cation and the pydc ligand [centroid–centroid distances = 3.489 (5) and 3.694 (5) Å] are observed.
Related literature
For related structures, see: Aghabozorg et al. (2008, 2010); Sheshmani et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2005); cell X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536811005629/hy2406sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811005629/hy2406Isup2.hkl
An aqueous solution of Bi(NO3)3 (1 mmol), pydcH2 (3 mmol) and 2,3-dapy (1 mmol) was refluxed for about 30 min in a 1:3:1 molar ratio. Brown crystals of the title compound were obtained from the solution by slow evaporation of the solvent within two weeks at room temperature.
H atoms attached to pyridine N and water O atoms were found in a difference Fourier map and refined with Uiso(H) = 1.0–1.5Ueq(N,O). H atoms of the water molecules, H9A, H9B, H10A, H10B, H11A, H11B were refined with distance restraints of O—H = 0.81 (7), 0.84 (8), 0.94 (8), 0.80 (8), 0.89 (8) and 0.92 (9) Å and H···H distance restraints of 1.45 (4) Å for H10A···H10B and 1.40 (4) Å for H11A···H11B. H atoms on C atoms were positioned geometrically and refined as riding atoms, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C). The highest residual electron density was found at 0.83 Å from Bi1 atom and the deepest hole at 0.74 Å from Bi1 atom.
Data collection: X-AREA (Stoe & Cie, 2005); cell
X-AREA (Stoe & Cie, 2005); data reduction: X-AREA (Stoe & Cie, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. [Symmetry code: (i) -x+1, -y, -z+2.] | |
Fig. 2. The coordination environment of the BiIII atom, showing a distorted bicapped trigonal-prismatic geometry. [Symmetry code: (i) -x+1, -y, -z+2.] | |
Fig. 3. A view of the crystal packing, showing O—H···O, N—H···O and weak C—H···O hydrogen bonds (dashed lines) in the title compound. | |
Fig. 4. π–π stacking interactions between the aromatic rings of the (2,3-dapyH)+ cation and pydc ligand. | |
Fig. 5. C—H···π interaction between C—H group of the (2,3-dapyH)+ cation and the aromatic ring of the pydc ligand. |
(C5H8N3)2[Bi2(C7H3NO4)4(H2O)2]·4H2O | Z = 1 |
Mr = 1406.76 | F(000) = 680 |
Triclinic, P1 | Dx = 2.109 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.3462 (19) Å | Cell parameters from 5940 reflections |
b = 10.726 (2) Å | θ = 2.2–29.2° |
c = 11.098 (2) Å | µ = 8.03 mm−1 |
α = 95.13 (3)° | T = 298 K |
β = 91.38 (3)° | Prism, brown |
γ = 90.47 (3)° | 0.33 × 0.27 × 0.23 mm |
V = 1107.7 (4) Å3 |
Stoe IPDS-2 diffractometer | 5940 independent reflections |
Radiation source: fine-focus sealed tube | 5539 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.113 |
ω scans | θmax = 29.2°, θmin = 2.2° |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | h = −12→12 |
Tmin = 0.083, Tmax = 0.156 | k = −14→14 |
12406 measured reflections | l = −15→15 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.057 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.154 | w = 1/[σ2(Fo2) + (0.1042P)2 + 3.0215P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
5940 reflections | Δρmax = 2.98 e Å−3 |
347 parameters | Δρmin = −2.93 e Å−3 |
9 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0047 (13) |
(C5H8N3)2[Bi2(C7H3NO4)4(H2O)2]·4H2O | γ = 90.47 (3)° |
Mr = 1406.76 | V = 1107.7 (4) Å3 |
Triclinic, P1 | Z = 1 |
a = 9.3462 (19) Å | Mo Kα radiation |
b = 10.726 (2) Å | µ = 8.03 mm−1 |
c = 11.098 (2) Å | T = 298 K |
α = 95.13 (3)° | 0.33 × 0.27 × 0.23 mm |
β = 91.38 (3)° |
Stoe IPDS-2 diffractometer | 5940 independent reflections |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | 5539 reflections with I > 2σ(I) |
Tmin = 0.083, Tmax = 0.156 | Rint = 0.113 |
12406 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 9 restraints |
wR(F2) = 0.154 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 2.98 e Å−3 |
5940 reflections | Δρmin = −2.93 e Å−3 |
347 parameters |
x | y | z | Uiso*/Ueq | ||
O10 | 0.8002 (8) | 0.0220 (8) | 0.8803 (9) | 0.0534 (19) | |
O8 | −0.0239 (8) | 0.3014 (6) | 1.0095 (8) | 0.056 (2) | |
O11 | 0.9124 (8) | 0.8479 (8) | 0.7003 (7) | 0.0502 (17) | |
O6 | 0.6729 (7) | 0.3001 (6) | 0.7953 (8) | 0.0494 (17) | |
Bi1 | 0.32379 (2) | 0.045644 (19) | 0.88303 (2) | 0.02387 (13) | |
N1 | 0.4091 (7) | −0.0927 (6) | 0.7035 (5) | 0.0265 (11) | |
C5 | 0.3481 (8) | −0.0744 (7) | 0.5968 (7) | 0.0297 (14) | |
C1 | 0.5057 (7) | −0.1819 (6) | 0.7123 (6) | 0.0247 (12) | |
C3 | 0.4867 (12) | −0.2374 (10) | 0.4998 (8) | 0.047 (2) | |
H3 | 0.5131 | −0.2871 | 0.4312 | 0.056* | |
C7 | 0.2415 (9) | 0.0299 (7) | 0.5988 (8) | 0.0359 (16) | |
C2 | 0.5469 (10) | −0.2566 (9) | 0.6098 (8) | 0.0426 (19) | |
H2 | 0.6147 | −0.3188 | 0.6163 | 0.051* | |
C4 | 0.3855 (10) | −0.1434 (9) | 0.4899 (8) | 0.0388 (17) | |
H4 | 0.3450 | −0.1277 | 0.4155 | 0.047* | |
N4 | 1.1655 (8) | 0.4867 (7) | 0.2534 (8) | 0.0436 (18) | |
H4A | 1.1986 | 0.4137 | 0.2319 | 0.052* | |
H4B | 1.2133 | 0.5526 | 0.2398 | 0.052* | |
C15 | 1.0421 (8) | 0.4974 (7) | 0.3068 (7) | 0.0300 (14) | |
C16 | 0.9763 (9) | 0.6147 (8) | 0.3425 (8) | 0.0333 (15) | |
N3 | 0.9707 (9) | 0.3919 (7) | 0.3263 (7) | 0.0383 (15) | |
N5 | 1.0463 (9) | 0.7230 (6) | 0.3244 (9) | 0.0462 (19) | |
H5A | 1.0086 | 0.7940 | 0.3469 | 0.055* | |
H5B | 1.1281 | 0.7205 | 0.2904 | 0.055* | |
C17 | 0.8460 (10) | 0.6133 (9) | 0.3960 (10) | 0.043 (2) | |
H17 | 0.8021 | 0.6885 | 0.4204 | 0.051* | |
C19 | 0.8402 (11) | 0.3898 (9) | 0.3806 (9) | 0.046 (2) | |
H19 | 0.7959 | 0.3144 | 0.3938 | 0.055* | |
C18 | 0.7782 (10) | 0.5004 (11) | 0.4144 (10) | 0.048 (2) | |
H18 | 0.6892 | 0.5012 | 0.4502 | 0.057* | |
O3 | 0.2133 (7) | 0.0852 (6) | 0.7009 (6) | 0.0381 (13) | |
O7 | 0.0896 (6) | 0.1326 (5) | 0.9346 (6) | 0.0340 (12) | |
O5 | 0.5370 (6) | 0.1332 (5) | 0.8106 (6) | 0.0324 (11) | |
N2 | 0.3143 (7) | 0.2700 (6) | 0.8827 (6) | 0.0262 (11) | |
C8 | 0.4311 (8) | 0.3335 (7) | 0.8530 (7) | 0.0283 (13) | |
O4 | 0.1860 (11) | 0.0529 (9) | 0.5024 (7) | 0.066 (2) | |
C14 | 0.0788 (9) | 0.2486 (7) | 0.9591 (8) | 0.0331 (15) | |
C13 | 0.5562 (8) | 0.2518 (7) | 0.8158 (7) | 0.0290 (14) | |
C12 | 0.1996 (8) | 0.3318 (7) | 0.9215 (7) | 0.0294 (14) | |
C9 | 0.4360 (8) | 0.4623 (7) | 0.8582 (8) | 0.0321 (15) | |
H9 | 0.5173 | 0.5045 | 0.8362 | 0.039* | |
C11 | 0.1952 (8) | 0.4614 (7) | 0.9293 (8) | 0.0324 (15) | |
H11 | 0.1135 | 0.5036 | 0.9554 | 0.039* | |
C10 | 0.3145 (9) | 0.5268 (7) | 0.8975 (9) | 0.0358 (17) | |
H10 | 0.3137 | 0.6138 | 0.9023 | 0.043* | |
O1 | 0.5240 (6) | −0.1236 (5) | 0.9223 (5) | 0.0290 (10) | |
O2 | 0.6605 (9) | −0.2791 (7) | 0.8471 (6) | 0.0489 (17) | |
C6 | 0.5695 (8) | −0.1989 (7) | 0.8366 (7) | 0.0276 (13) | |
O9 | 0.1606 (8) | −0.1496 (7) | 0.8422 (7) | 0.0455 (15) | |
H10B | 0.867 (9) | 0.064 (12) | 0.906 (13) | 0.055* | |
H11A | 0.851 (13) | 0.845 (14) | 0.638 (9) | 0.068* | |
H11B | 0.860 (15) | 0.908 (13) | 0.742 (11) | 0.068* | |
H9A | 0.143 (14) | −0.171 (15) | 0.909 (8) | 0.068* | |
H9B | 0.090 (13) | −0.126 (14) | 0.802 (10) | 0.068* | |
H10A | 0.717 (9) | 0.070 (11) | 0.875 (12) | 0.055* | |
H3A | 1.007 (14) | 0.325 (13) | 0.289 (12) | 0.055* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O10 | 0.036 (3) | 0.043 (3) | 0.081 (6) | 0.007 (3) | −0.001 (3) | 0.005 (4) |
O8 | 0.052 (4) | 0.029 (3) | 0.090 (6) | 0.012 (3) | 0.045 (4) | 0.005 (3) |
O11 | 0.049 (4) | 0.054 (4) | 0.049 (4) | 0.022 (3) | −0.006 (3) | 0.011 (3) |
O6 | 0.034 (3) | 0.034 (3) | 0.080 (5) | −0.004 (2) | 0.025 (3) | 0.001 (3) |
Bi1 | 0.02420 (17) | 0.01863 (16) | 0.02853 (18) | 0.00371 (9) | 0.00376 (9) | −0.00045 (9) |
N1 | 0.030 (3) | 0.026 (3) | 0.024 (3) | 0.004 (2) | 0.004 (2) | 0.000 (2) |
C5 | 0.032 (3) | 0.025 (3) | 0.032 (4) | 0.000 (3) | 0.003 (3) | 0.000 (3) |
C1 | 0.025 (3) | 0.022 (3) | 0.026 (3) | 0.002 (2) | 0.003 (2) | −0.004 (2) |
C3 | 0.060 (6) | 0.049 (5) | 0.030 (4) | 0.014 (4) | 0.012 (4) | −0.010 (4) |
C7 | 0.039 (4) | 0.028 (3) | 0.042 (4) | 0.006 (3) | 0.004 (3) | 0.006 (3) |
C2 | 0.041 (4) | 0.046 (5) | 0.037 (4) | 0.011 (4) | 0.006 (3) | −0.015 (4) |
C4 | 0.045 (4) | 0.043 (4) | 0.027 (4) | 0.004 (3) | 0.006 (3) | −0.003 (3) |
N4 | 0.037 (4) | 0.030 (3) | 0.063 (5) | 0.005 (3) | 0.019 (3) | −0.004 (3) |
C15 | 0.035 (4) | 0.030 (3) | 0.025 (3) | 0.000 (3) | −0.001 (3) | 0.002 (3) |
C16 | 0.032 (4) | 0.029 (3) | 0.039 (4) | 0.000 (3) | 0.005 (3) | 0.003 (3) |
N3 | 0.045 (4) | 0.027 (3) | 0.043 (4) | −0.001 (3) | 0.010 (3) | −0.002 (3) |
N5 | 0.051 (4) | 0.019 (3) | 0.069 (5) | 0.007 (3) | 0.024 (4) | 0.002 (3) |
C17 | 0.037 (4) | 0.036 (4) | 0.055 (6) | 0.012 (3) | 0.013 (4) | 0.002 (4) |
C19 | 0.053 (5) | 0.041 (4) | 0.044 (5) | −0.009 (4) | 0.013 (4) | 0.003 (4) |
C18 | 0.033 (4) | 0.057 (6) | 0.052 (5) | −0.011 (4) | 0.015 (4) | −0.008 (4) |
O3 | 0.044 (3) | 0.034 (3) | 0.036 (3) | 0.018 (2) | −0.007 (2) | 0.001 (2) |
O7 | 0.029 (2) | 0.024 (2) | 0.048 (3) | −0.0006 (19) | 0.007 (2) | 0.004 (2) |
O5 | 0.031 (3) | 0.024 (2) | 0.042 (3) | 0.0096 (19) | 0.014 (2) | 0.002 (2) |
N2 | 0.027 (3) | 0.025 (3) | 0.026 (3) | 0.005 (2) | 0.006 (2) | −0.002 (2) |
C8 | 0.033 (3) | 0.022 (3) | 0.029 (3) | 0.002 (2) | 0.006 (3) | 0.001 (2) |
O4 | 0.082 (6) | 0.073 (5) | 0.042 (4) | 0.035 (5) | −0.015 (4) | 0.003 (4) |
C14 | 0.033 (4) | 0.024 (3) | 0.043 (4) | 0.005 (3) | 0.008 (3) | 0.008 (3) |
C13 | 0.027 (3) | 0.027 (3) | 0.032 (3) | 0.004 (2) | 0.008 (3) | −0.001 (3) |
C12 | 0.028 (3) | 0.025 (3) | 0.035 (4) | 0.002 (2) | 0.005 (3) | −0.003 (3) |
C9 | 0.026 (3) | 0.025 (3) | 0.046 (4) | 0.003 (2) | 0.008 (3) | 0.003 (3) |
C11 | 0.028 (3) | 0.026 (3) | 0.043 (4) | 0.006 (3) | 0.007 (3) | −0.001 (3) |
C10 | 0.036 (4) | 0.023 (3) | 0.048 (5) | 0.007 (3) | 0.006 (3) | 0.000 (3) |
O1 | 0.030 (2) | 0.032 (2) | 0.023 (2) | 0.007 (2) | −0.0015 (19) | −0.0062 (19) |
O2 | 0.067 (4) | 0.040 (3) | 0.039 (3) | 0.029 (3) | −0.002 (3) | −0.002 (3) |
C6 | 0.027 (3) | 0.026 (3) | 0.029 (3) | 0.004 (2) | 0.006 (3) | −0.002 (3) |
O9 | 0.045 (3) | 0.041 (3) | 0.049 (4) | −0.012 (3) | 0.010 (3) | −0.005 (3) |
O10—H10B | 0.80 (8) | C15—C16 | 1.433 (11) |
O10—H10A | 0.94 (8) | C16—N5 | 1.362 (11) |
O8—C14 | 1.239 (10) | C16—C17 | 1.368 (12) |
O11—H11A | 0.89 (8) | N3—C19 | 1.374 (12) |
O11—H11B | 0.92 (9) | N3—H3A | 0.87 (14) |
O6—C13 | 1.238 (9) | N5—H5A | 0.8600 |
Bi1—O3 | 2.323 (6) | N5—H5B | 0.8600 |
Bi1—O5 | 2.384 (6) | C17—C18 | 1.396 (15) |
Bi1—N2 | 2.409 (6) | C17—H17 | 0.9300 |
Bi1—O7 | 2.447 (6) | C19—C18 | 1.351 (15) |
Bi1—N1 | 2.525 (6) | C19—H19 | 0.9300 |
Bi1—O9 | 2.581 (7) | C18—H18 | 0.9300 |
Bi1—O1i | 2.627 (5) | O7—C14 | 1.255 (9) |
Bi1—O1 | 2.673 (5) | O5—C13 | 1.279 (9) |
N1—C1 | 1.329 (9) | N2—C12 | 1.325 (9) |
N1—C5 | 1.333 (10) | N2—C8 | 1.346 (9) |
C5—C4 | 1.394 (11) | C8—C9 | 1.377 (10) |
C5—C7 | 1.504 (11) | C8—C13 | 1.510 (10) |
C1—C2 | 1.395 (10) | C14—C12 | 1.522 (11) |
C1—C6 | 1.516 (10) | C12—C11 | 1.386 (10) |
C3—C2 | 1.364 (14) | C9—C10 | 1.394 (10) |
C3—C4 | 1.398 (14) | C9—H9 | 0.9300 |
C3—H3 | 0.9300 | C11—C10 | 1.381 (12) |
C7—O4 | 1.224 (12) | C11—H11 | 0.9300 |
C7—O3 | 1.266 (11) | C10—H10 | 0.9300 |
C2—H2 | 0.9300 | O1—C6 | 1.275 (9) |
C4—H4 | 0.9300 | O1—Bi1i | 2.627 (5) |
N4—C15 | 1.310 (11) | O2—C6 | 1.225 (10) |
N4—H4A | 0.8600 | O9—H9A | 0.81 (7) |
N4—H4B | 0.8600 | O9—H9B | 0.84 (8) |
C15—N3 | 1.346 (10) | ||
H10B—O10—H10A | 112 (9) | N3—C15—C16 | 117.8 (7) |
H11A—O11—H11B | 91 (8) | N5—C16—C17 | 122.4 (8) |
O3—Bi1—O5 | 87.5 (2) | N5—C16—C15 | 119.2 (7) |
O3—Bi1—N2 | 73.7 (2) | C17—C16—C15 | 118.4 (8) |
O5—Bi1—N2 | 67.26 (19) | C15—N3—C19 | 124.1 (8) |
O3—Bi1—O7 | 74.0 (2) | C15—N3—H3A | 113 (9) |
O5—Bi1—O7 | 133.22 (18) | C19—N3—H3A | 122 (9) |
N2—Bi1—O7 | 66.40 (19) | C16—N5—H5A | 120.0 |
O3—Bi1—N1 | 66.3 (2) | C16—N5—H5B | 120.0 |
O5—Bi1—N1 | 70.7 (2) | H5A—N5—H5B | 120.0 |
N2—Bi1—N1 | 122.1 (2) | C16—C17—C18 | 120.9 (8) |
O7—Bi1—N1 | 132.5 (2) | C16—C17—H17 | 119.6 |
O3—Bi1—O9 | 79.0 (3) | C18—C17—H17 | 119.6 |
O5—Bi1—O9 | 140.1 (2) | C18—C19—N3 | 118.1 (9) |
N2—Bi1—O9 | 140.2 (2) | C18—C19—H19 | 121.0 |
O7—Bi1—O9 | 78.7 (2) | N3—C19—H19 | 121.0 |
N1—Bi1—O9 | 69.4 (2) | C19—C18—C17 | 120.7 (8) |
O3—Bi1—O1i | 150.1 (2) | C19—C18—H18 | 119.6 |
O5—Bi1—O1i | 74.6 (2) | C17—C18—H18 | 119.6 |
N2—Bi1—O1i | 77.3 (2) | C7—O3—Bi1 | 124.9 (5) |
O7—Bi1—O1i | 100.97 (19) | C14—O7—Bi1 | 119.0 (5) |
N1—Bi1—O1i | 126.40 (18) | C13—O5—Bi1 | 121.0 (4) |
O9—Bi1—O1i | 129.7 (2) | C12—N2—C8 | 119.8 (6) |
O3—Bi1—O1 | 128.33 (18) | C12—N2—Bi1 | 120.5 (5) |
O5—Bi1—O1 | 76.04 (18) | C8—N2—Bi1 | 119.4 (5) |
N2—Bi1—O1 | 136.45 (19) | N2—C8—C9 | 122.5 (7) |
O7—Bi1—O1 | 147.79 (19) | N2—C8—C13 | 114.3 (6) |
N1—Bi1—O1 | 61.99 (18) | C9—C8—C13 | 123.2 (7) |
O9—Bi1—O1 | 83.3 (2) | O8—C14—O7 | 125.2 (8) |
O1i—Bi1—O1 | 70.87 (18) | O8—C14—C12 | 117.1 (7) |
C1—N1—C5 | 120.5 (6) | O7—C14—C12 | 117.7 (7) |
C1—N1—Bi1 | 123.4 (5) | O6—C13—O5 | 122.5 (7) |
C5—N1—Bi1 | 116.0 (5) | O6—C13—C8 | 120.1 (7) |
N1—C5—C4 | 122.3 (7) | O5—C13—C8 | 117.4 (6) |
N1—C5—C7 | 115.4 (7) | N2—C12—C11 | 121.4 (7) |
C4—C5—C7 | 122.3 (8) | N2—C12—C14 | 114.3 (6) |
N1—C1—C2 | 120.7 (7) | C11—C12—C14 | 124.3 (7) |
N1—C1—C6 | 117.8 (6) | C8—C9—C10 | 117.5 (7) |
C2—C1—C6 | 121.5 (7) | C8—C9—H9 | 121.3 |
C2—C3—C4 | 120.3 (8) | C10—C9—H9 | 121.3 |
C2—C3—H3 | 119.8 | C10—C11—C12 | 118.8 (7) |
C4—C3—H3 | 119.8 | C10—C11—H11 | 120.6 |
O4—C7—O3 | 124.9 (8) | C12—C11—H11 | 120.6 |
O4—C7—C5 | 117.8 (8) | C11—C10—C9 | 119.9 (7) |
O3—C7—C5 | 117.3 (7) | C11—C10—H10 | 120.0 |
C3—C2—C1 | 119.3 (8) | C9—C10—H10 | 120.0 |
C3—C2—H2 | 120.3 | C6—O1—Bi1i | 124.2 (5) |
C1—C2—H2 | 120.3 | C6—O1—Bi1 | 121.5 (5) |
C5—C4—C3 | 116.9 (8) | Bi1i—O1—Bi1 | 109.13 (18) |
C5—C4—H4 | 121.6 | O2—C6—O1 | 125.5 (7) |
C3—C4—H4 | 121.6 | O2—C6—C1 | 119.2 (7) |
C15—N4—H4A | 120.0 | O1—C6—C1 | 115.2 (6) |
C15—N4—H4B | 120.0 | Bi1—O9—H9A | 105 (10) |
H4A—N4—H4B | 120.0 | Bi1—O9—H9B | 106 (10) |
N4—C15—N3 | 118.1 (8) | H9A—O9—H9B | 116 (10) |
N4—C15—C16 | 124.0 (7) | ||
O3—Bi1—N1—C1 | −178.5 (6) | O1i—Bi1—O5—C13 | −75.3 (6) |
O5—Bi1—N1—C1 | 85.6 (6) | O1—Bi1—O5—C13 | −148.9 (6) |
N2—Bi1—N1—C1 | 131.0 (5) | O3—Bi1—N2—C12 | 86.6 (6) |
O7—Bi1—N1—C1 | −142.8 (5) | O5—Bi1—N2—C12 | −179.2 (6) |
O9—Bi1—N1—C1 | −91.8 (6) | O7—Bi1—N2—C12 | 7.3 (6) |
O1i—Bi1—N1—C1 | 33.0 (6) | N1—Bi1—N2—C12 | 134.0 (6) |
O1—Bi1—N1—C1 | 1.6 (5) | O9—Bi1—N2—C12 | 38.0 (7) |
O3—Bi1—N1—C5 | −0.5 (5) | O1i—Bi1—N2—C12 | −100.8 (6) |
O5—Bi1—N1—C5 | −96.4 (5) | O1—Bi1—N2—C12 | −144.4 (5) |
N2—Bi1—N1—C5 | −51.0 (6) | O3—Bi1—N2—C8 | −99.3 (6) |
O7—Bi1—N1—C5 | 35.2 (6) | O5—Bi1—N2—C8 | −5.1 (5) |
O9—Bi1—N1—C5 | 86.2 (5) | O7—Bi1—N2—C8 | −178.5 (6) |
O1i—Bi1—N1—C5 | −149.0 (5) | N1—Bi1—N2—C8 | −51.9 (6) |
O1—Bi1—N1—C5 | 179.6 (6) | O9—Bi1—N2—C8 | −147.8 (5) |
C1—N1—C5—C4 | −2.4 (11) | O1i—Bi1—N2—C8 | 73.3 (5) |
Bi1—N1—C5—C4 | 179.5 (6) | O1—Bi1—N2—C8 | 29.8 (7) |
C1—N1—C5—C7 | −179.6 (7) | C12—N2—C8—C9 | −1.7 (12) |
Bi1—N1—C5—C7 | 2.4 (8) | Bi1—N2—C8—C9 | −175.9 (6) |
C5—N1—C1—C2 | 1.1 (11) | C12—N2—C8—C13 | 177.3 (7) |
Bi1—N1—C1—C2 | 179.0 (6) | Bi1—N2—C8—C13 | 3.1 (9) |
C5—N1—C1—C6 | −179.2 (6) | Bi1—O7—C14—O8 | −164.6 (8) |
Bi1—N1—C1—C6 | −1.3 (9) | Bi1—O7—C14—C12 | 16.9 (10) |
N1—C5—C7—O4 | 177.7 (9) | Bi1—O5—C13—O6 | 169.5 (7) |
C4—C5—C7—O4 | 0.5 (13) | Bi1—O5—C13—C8 | −8.4 (10) |
N1—C5—C7—O3 | −4.0 (11) | N2—C8—C13—O6 | −174.6 (8) |
C4—C5—C7—O3 | 178.8 (8) | C9—C8—C13—O6 | 4.4 (13) |
C4—C3—C2—C1 | 0.4 (16) | N2—C8—C13—O5 | 3.3 (11) |
N1—C1—C2—C3 | −0.2 (14) | C9—C8—C13—O5 | −177.7 (8) |
C6—C1—C2—C3 | −179.8 (9) | C8—N2—C12—C11 | 1.8 (12) |
N1—C5—C4—C3 | 2.6 (13) | Bi1—N2—C12—C11 | 175.9 (6) |
C7—C5—C4—C3 | 179.5 (9) | C8—N2—C12—C14 | −176.5 (7) |
C2—C3—C4—C5 | −1.5 (15) | Bi1—N2—C12—C14 | −2.4 (9) |
N4—C15—C16—N5 | −2.3 (13) | O8—C14—C12—N2 | 171.6 (9) |
N3—C15—C16—N5 | 179.7 (9) | O7—C14—C12—N2 | −9.8 (11) |
N4—C15—C16—C17 | 179.0 (9) | O8—C14—C12—C11 | −6.6 (14) |
N3—C15—C16—C17 | 1.0 (12) | O7—C14—C12—C11 | 172.0 (8) |
N4—C15—N3—C19 | −179.6 (9) | N2—C8—C9—C10 | 0.8 (13) |
C16—C15—N3—C19 | −1.5 (13) | C13—C8—C9—C10 | −178.1 (8) |
N5—C16—C17—C18 | −179.2 (11) | N2—C12—C11—C10 | −1.0 (13) |
C15—C16—C17—C18 | −0.6 (15) | C14—C12—C11—C10 | 177.1 (8) |
C15—N3—C19—C18 | 1.4 (15) | C12—C11—C10—C9 | 0.2 (13) |
N3—C19—C18—C17 | −0.9 (17) | C8—C9—C10—C11 | −0.1 (13) |
C16—C17—C18—C19 | 0.6 (17) | O3—Bi1—O1—C6 | −2.0 (7) |
O4—C7—O3—Bi1 | −178.0 (9) | O5—Bi1—O1—C6 | −77.3 (6) |
C5—C7—O3—Bi1 | 3.8 (11) | N2—Bi1—O1—C6 | −110.2 (6) |
O5—Bi1—O3—C7 | 68.1 (7) | O7—Bi1—O1—C6 | 124.4 (6) |
N2—Bi1—O3—C7 | 135.2 (8) | N1—Bi1—O1—C6 | −1.9 (5) |
O7—Bi1—O3—C7 | −155.3 (8) | O9—Bi1—O1—C6 | 68.3 (6) |
N1—Bi1—O3—C7 | −1.9 (7) | O1i—Bi1—O1—C6 | −155.5 (7) |
O9—Bi1—O3—C7 | −74.1 (7) | O3—Bi1—O1—Bi1i | 153.5 (2) |
O1i—Bi1—O3—C7 | 120.6 (7) | O5—Bi1—O1—Bi1i | 78.3 (2) |
O1—Bi1—O3—C7 | −1.8 (8) | N2—Bi1—O1—Bi1i | 45.4 (4) |
O3—Bi1—O7—C14 | −91.9 (7) | O7—Bi1—O1—Bi1i | −80.0 (4) |
O5—Bi1—O7—C14 | −21.3 (8) | N1—Bi1—O1—Bi1i | 153.6 (3) |
N2—Bi1—O7—C14 | −13.0 (6) | O9—Bi1—O1—Bi1i | −136.2 (3) |
N1—Bi1—O7—C14 | −125.7 (6) | O1i—Bi1—O1—Bi1i | 0.0 |
O9—Bi1—O7—C14 | −173.6 (7) | Bi1i—O1—C6—O2 | 28.4 (11) |
O1i—Bi1—O7—C14 | 57.8 (7) | Bi1—O1—C6—O2 | −179.9 (7) |
O1—Bi1—O7—C14 | 129.2 (6) | Bi1i—O1—C6—C1 | −149.8 (5) |
O3—Bi1—O5—C13 | 80.5 (6) | Bi1—O1—C6—C1 | 2.0 (8) |
N2—Bi1—O5—C13 | 7.2 (6) | N1—C1—C6—O2 | −178.8 (8) |
O7—Bi1—O5—C13 | 15.4 (7) | C2—C1—C6—O2 | 0.9 (12) |
N1—Bi1—O5—C13 | 146.3 (7) | N1—C1—C6—O1 | −0.6 (10) |
O9—Bi1—O5—C13 | 150.0 (6) | C2—C1—C6—O1 | 179.1 (8) |
Symmetry code: (i) −x+1, −y, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O11ii | 0.87 (14) | 2.02 (14) | 2.797 (10) | 148 (12) |
N4—H4A···O2iii | 0.86 | 2.11 | 2.924 (9) | 158 |
N4—H4B···O6ii | 0.86 | 1.97 | 2.830 (10) | 178 |
N5—H5A···O3iv | 0.86 | 2.53 | 3.216 (10) | 138 |
N5—H5B···O6ii | 0.86 | 2.11 | 2.972 (10) | 176 |
O9—H9A···O8v | 0.81 (7) | 2.07 (12) | 2.746 (10) | 141 (15) |
O9—H9B···O11vi | 0.84 (8) | 1.99 (10) | 2.771 (11) | 155 (15) |
O10—H10A···O5 | 0.94 (8) | 1.96 (8) | 2.862 (9) | 160 (11) |
O10—H10B···O7vii | 0.80 (8) | 2.21 (8) | 2.972 (10) | 160 (13) |
O11—H11A···O4iv | 0.89 (8) | 2.01 (13) | 2.717 (11) | 136 (14) |
O11—H11B···O10viii | 0.92 (9) | 1.96 (9) | 2.836 (12) | 158 (13) |
C11—H11···O8ix | 0.93 | 2.26 | 3.050 (10) | 142 |
Symmetry codes: (ii) −x+2, −y+1, −z+1; (iii) −x+2, −y, −z+1; (iv) −x+1, −y+1, −z+1; (v) −x, −y, −z+2; (vi) x−1, y−1, z; (vii) x+1, y, z; (viii) x, y+1, z; (ix) −x, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | (C5H8N3)2[Bi2(C7H3NO4)4(H2O)2]·4H2O |
Mr | 1406.76 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 9.3462 (19), 10.726 (2), 11.098 (2) |
α, β, γ (°) | 95.13 (3), 91.38 (3), 90.47 (3) |
V (Å3) | 1107.7 (4) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 8.03 |
Crystal size (mm) | 0.33 × 0.27 × 0.23 |
Data collection | |
Diffractometer | Stoe IPDS2 diffractometer |
Absorption correction | Numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) |
Tmin, Tmax | 0.083, 0.156 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12406, 5940, 5539 |
Rint | 0.113 |
(sin θ/λ)max (Å−1) | 0.686 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.154, 1.05 |
No. of reflections | 5940 |
No. of parameters | 347 |
No. of restraints | 9 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 2.98, −2.93 |
Computer programs: X-AREA (Stoe & Cie, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O11i | 0.87 (14) | 2.02 (14) | 2.797 (10) | 148 (12) |
N4—H4A···O2ii | 0.86 | 2.11 | 2.924 (9) | 158 |
N4—H4B···O6i | 0.86 | 1.97 | 2.830 (10) | 178 |
N5—H5A···O3iii | 0.86 | 2.53 | 3.216 (10) | 138 |
N5—H5B···O6i | 0.86 | 2.11 | 2.972 (10) | 176 |
O9—H9A···O8iv | 0.81 (7) | 2.07 (12) | 2.746 (10) | 141 (15) |
O9—H9B···O11v | 0.84 (8) | 1.99 (10) | 2.771 (11) | 155 (15) |
O10—H10A···O5 | 0.94 (8) | 1.96 (8) | 2.862 (9) | 160 (11) |
O10—H10B···O7vi | 0.80 (8) | 2.21 (8) | 2.972 (10) | 160 (13) |
O11—H11A···O4iii | 0.89 (8) | 2.01 (13) | 2.717 (11) | 136 (14) |
O11—H11B···O10vii | 0.92 (9) | 1.96 (9) | 2.836 (12) | 158 (13) |
C11—H11···O8viii | 0.93 | 2.26 | 3.050 (10) | 142 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+2, −y, −z+1; (iii) −x+1, −y+1, −z+1; (iv) −x, −y, −z+2; (v) x−1, y−1, z; (vi) x+1, y, z; (vii) x, y+1, z; (viii) −x, −y+1, −z+2. |
Acknowledgements
We are grateful to the Islamic Azad University, North Tehran Branch, for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyridine-2,6-dicarboxylic acid (pydcH2) can form various complexes containing transition and main metals (Aghabozorg et al., 2008). There are complexes in which pydc acts as a bridging ligand between two metal atoms (Aghabozorg et al., 2010; Sheshmani et al., 2005).
Herein, we report the crystal structure of the title compund as another example of bismuth(III) coordination compound, which bears heterocyclic 2,3-diaminopyridine (2,3-dapy) and pydcH2 ligands. The molecular structure of the title compound is shown in Fig. 1. The centrosymmetric binuclear unit consists of two BiIII atoms, four (pydc)2- ligands, two coordinated water molecules. Two pydc ligands act as tridentate ligands with an N atom of the pyridine ring and two O atoms of the dicarboxylate groups acting as donors. One of the dicarboxylate O atoms for the other two pydc ligands plays a bridging role between two Bi atoms. The structure also contains two (2,3-dapyH)+ cations and four uncoordinated water molecules. The BiIII atom is eight-coordinated in an N2O6 environment and has a distorted bicapped trigonal-prismatic geometry, as it is shown in Fig. 2. There are extensive intermolecular O—H···O, N—H···O and weak C—H···O hydrogen bonds, which cause the stability of the crystal structure (Fig. 3, Table 1). There are also π–π interactions between the (2,3-dapyH)+ rings and between the (2,3-dapyH)+ and pydc rings (Fig. 4), with centroid–centroid distances of 3.489 (5) and 3.694 (5) Å, respectively. Furthermore, there is C—H···π interacton between C—H group of the (2,3-dapyH)+ cation and pydc ligand, with an C—H···centroid distance of 2.78 Å (Fig. 5).