organic compounds
2-Amino-6-methylpyridinium 4-nitrobenzoate
aState Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210093, People's Republic of China
*Correspondence e-mail: yiqiaohu@126.com
In the 6H9N2+·C7H4NO4−, the cations and anions are linked by N—H⋯O hydrogen bonds, forming chains running parallel to the b axis.
of the title salt, CRelated literature
For background to ways of decreasing of bitterness in foods and medicines, see: Suzuki et al. (2002, 2004); Hofmann (1999); Shaw et al. (1984). For bond-length data, see: Allen et al. (1987). For related structures, see: Saminathan & Sivakumar (2007a,b); Näther et al. (1997); In et al. (1997); Harrison et al. (2007); Soriano-García et al. (1990); You et al. (2007).
Experimental
Crystal data
|
Refinement
|
Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811003539/rz2548sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811003539/rz2548Isup2.hkl
All the reagents used were of commercially grade and without further purification. 4-Nitrobenzoic acid (0.1 mmol, 16.7 mg) and 6-methyl-2-aminopyridine (0.1 mmol, 10.8 mg) were dissolved in MeOH/H2O (10 ml, 1:1 v/v). The mixture was stirred at room temperature for 30 min to give a clear colourless solution. After keeping the solution in air for 20 days, colorless block-shaped crystals were formed on slow evaporation of the solvents.
The amino H atoms were located in a difference Fourier map and refined isotropically, with the N—H and H···H distances restrained to 0.90 (1) and 1.45 (2) Å, respectively, and with Uiso(H) set to 0.08 Å2. All other H atoms were placed in idealized positions and constrained to ride on their parent atoms with C—H distances of 0.93–0.96 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(C) for methyl H atoms. In the absence of significant
effects, Friedel pairs were averaged.Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C6H9N2+·C7H4NO4− | F(000) = 288 |
Mr = 275.26 | Dx = 1.354 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 1260 reflections |
a = 8.0487 (11) Å | θ = 2.5–24.5° |
b = 6.7247 (9) Å | µ = 0.10 mm−1 |
c = 12.7467 (17) Å | T = 298 K |
β = 101.802 (7)° | Block, colourless |
V = 675.33 (16) Å3 | 0.20 × 0.20 × 0.18 mm |
Z = 2 |
Bruker SMART 1000 CCD area-detector diffractometer | 1591 independent reflections |
Radiation source: fine-focus sealed tube | 1265 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ω scans | θmax = 27.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −10→9 |
Tmin = 0.980, Tmax = 0.982 | k = −8→8 |
4175 measured reflections | l = −16→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.105 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0566P)2 + 0.0371P] where P = (Fo2 + 2Fc2)/3 |
1591 reflections | (Δ/σ)max = 0.001 |
191 parameters | Δρmax = 0.12 e Å−3 |
5 restraints | Δρmin = −0.17 e Å−3 |
C6H9N2+·C7H4NO4− | V = 675.33 (16) Å3 |
Mr = 275.26 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 8.0487 (11) Å | µ = 0.10 mm−1 |
b = 6.7247 (9) Å | T = 298 K |
c = 12.7467 (17) Å | 0.20 × 0.20 × 0.18 mm |
β = 101.802 (7)° |
Bruker SMART 1000 CCD area-detector diffractometer | 1591 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 1265 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.982 | Rint = 0.026 |
4175 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 5 restraints |
wR(F2) = 0.105 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.12 e Å−3 |
1591 reflections | Δρmin = −0.17 e Å−3 |
191 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.6188 (2) | 0.2067 (4) | 0.26835 (16) | 0.0512 (5) | |
N2 | 0.5065 (3) | 0.1703 (4) | 0.08960 (18) | 0.0686 (7) | |
N3 | 1.1646 (3) | 0.0460 (4) | 0.2380 (2) | 0.0627 (6) | |
O1 | 1.1579 (3) | −0.0626 (4) | 0.16070 (19) | 0.0851 (7) | |
O2 | 1.2502 (3) | 0.0106 (4) | 0.32683 (18) | 0.0880 (7) | |
O3 | 0.7086 (2) | 0.8232 (3) | 0.09467 (14) | 0.0688 (5) | |
O4 | 0.8038 (2) | 0.8810 (3) | 0.26794 (14) | 0.0657 (5) | |
C1 | 1.0666 (3) | 0.2328 (4) | 0.2239 (2) | 0.0516 (6) | |
C2 | 0.9742 (3) | 0.2807 (4) | 0.1239 (2) | 0.0561 (6) | |
H2 | 0.9713 | 0.1955 | 0.0661 | 0.067* | |
C3 | 0.8860 (3) | 0.4578 (4) | 0.11130 (19) | 0.0533 (6) | |
H3 | 0.8237 | 0.4927 | 0.0441 | 0.064* | |
C4 | 0.8890 (3) | 0.5844 (4) | 0.19746 (17) | 0.0466 (5) | |
C5 | 0.9823 (3) | 0.5302 (4) | 0.29720 (19) | 0.0582 (7) | |
H5 | 0.9845 | 0.6137 | 0.3556 | 0.070* | |
C6 | 1.0720 (3) | 0.3536 (4) | 0.3108 (2) | 0.0583 (7) | |
H6 | 1.1348 | 0.3177 | 0.3777 | 0.070* | |
C7 | 0.7922 (3) | 0.7779 (4) | 0.1853 (2) | 0.0514 (6) | |
C8 | 0.6412 (3) | 0.3019 (5) | 0.3640 (2) | 0.0608 (7) | |
C9 | 0.5624 (4) | 0.4787 (5) | 0.3702 (3) | 0.0767 (9) | |
H9 | 0.5770 | 0.5468 | 0.4350 | 0.092* | |
C10 | 0.4597 (4) | 0.5562 (5) | 0.2784 (3) | 0.0770 (9) | |
H10 | 0.4059 | 0.6775 | 0.2823 | 0.092* | |
C11 | 0.4361 (3) | 0.4599 (5) | 0.1837 (3) | 0.0656 (8) | |
H11 | 0.3662 | 0.5135 | 0.1231 | 0.079* | |
C12 | 0.5192 (3) | 0.2767 (4) | 0.1779 (2) | 0.0542 (6) | |
C13 | 0.7530 (4) | 0.2001 (7) | 0.4557 (2) | 0.0845 (10) | |
H13A | 0.7053 | 0.0731 | 0.4672 | 0.127* | |
H13B | 0.7622 | 0.2801 | 0.5190 | 0.127* | |
H13C | 0.8636 | 0.1816 | 0.4399 | 0.127* | |
H1 | 0.676 (4) | 0.092 (3) | 0.264 (2) | 0.080* | |
H2A | 0.440 (3) | 0.204 (5) | 0.0282 (13) | 0.080* | |
H2B | 0.571 (3) | 0.064 (3) | 0.088 (2) | 0.080* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0508 (11) | 0.0513 (13) | 0.0501 (10) | 0.0044 (10) | 0.0069 (8) | 0.0074 (10) |
N2 | 0.0733 (15) | 0.0610 (16) | 0.0586 (13) | 0.0073 (13) | −0.0163 (11) | 0.0064 (13) |
N3 | 0.0631 (13) | 0.0528 (15) | 0.0738 (15) | 0.0060 (11) | 0.0178 (11) | 0.0139 (13) |
O1 | 0.1048 (16) | 0.0672 (14) | 0.0887 (15) | 0.0245 (13) | 0.0325 (13) | 0.0011 (13) |
O2 | 0.0926 (15) | 0.0715 (16) | 0.0917 (14) | 0.0277 (13) | −0.0003 (12) | 0.0160 (13) |
O3 | 0.0837 (12) | 0.0484 (11) | 0.0595 (10) | 0.0035 (10) | −0.0198 (8) | 0.0002 (9) |
O4 | 0.0827 (12) | 0.0477 (11) | 0.0568 (10) | 0.0119 (10) | −0.0088 (9) | −0.0042 (9) |
C1 | 0.0492 (12) | 0.0439 (14) | 0.0621 (14) | −0.0003 (10) | 0.0125 (10) | 0.0091 (12) |
C2 | 0.0641 (14) | 0.0527 (16) | 0.0516 (13) | 0.0013 (13) | 0.0118 (11) | −0.0010 (12) |
C3 | 0.0603 (14) | 0.0508 (15) | 0.0449 (12) | −0.0013 (12) | 0.0019 (11) | 0.0042 (12) |
C4 | 0.0483 (12) | 0.0389 (12) | 0.0485 (12) | −0.0047 (10) | 0.0001 (9) | 0.0038 (10) |
C5 | 0.0675 (16) | 0.0501 (15) | 0.0502 (13) | 0.0024 (13) | −0.0042 (11) | −0.0028 (13) |
C6 | 0.0625 (15) | 0.0531 (17) | 0.0531 (13) | 0.0044 (12) | −0.0027 (11) | 0.0072 (12) |
C7 | 0.0535 (12) | 0.0394 (13) | 0.0539 (13) | −0.0048 (11) | −0.0062 (10) | 0.0004 (12) |
C8 | 0.0603 (14) | 0.0689 (17) | 0.0555 (14) | 0.0064 (14) | 0.0173 (11) | 0.0015 (14) |
C9 | 0.079 (2) | 0.078 (2) | 0.0775 (19) | 0.0153 (18) | 0.0268 (16) | −0.0056 (18) |
C10 | 0.0680 (17) | 0.066 (2) | 0.102 (2) | 0.0169 (16) | 0.0304 (16) | 0.004 (2) |
C11 | 0.0519 (14) | 0.0621 (18) | 0.0810 (19) | 0.0102 (13) | 0.0097 (13) | 0.0150 (16) |
C12 | 0.0457 (12) | 0.0548 (16) | 0.0589 (14) | −0.0025 (11) | 0.0033 (10) | 0.0115 (13) |
C13 | 0.099 (2) | 0.102 (3) | 0.0512 (15) | 0.022 (2) | 0.0107 (14) | 0.0011 (18) |
N1—C12 | 1.348 (3) | C4—C5 | 1.386 (3) |
N1—C8 | 1.356 (3) | C4—C7 | 1.508 (3) |
N1—H1 | 0.908 (10) | C5—C6 | 1.382 (4) |
N2—C12 | 1.320 (4) | C5—H5 | 0.9300 |
N2—H2A | 0.883 (10) | C6—H6 | 0.9300 |
N2—H2B | 0.889 (10) | C8—C9 | 1.357 (4) |
N3—O1 | 1.218 (3) | C8—C13 | 1.488 (4) |
N3—O2 | 1.223 (3) | C9—C10 | 1.389 (4) |
N3—C1 | 1.475 (3) | C9—H9 | 0.9300 |
O3—C7 | 1.250 (3) | C10—C11 | 1.349 (4) |
O4—C7 | 1.249 (3) | C10—H10 | 0.9300 |
C1—C6 | 1.368 (4) | C11—C12 | 1.411 (4) |
C1—C2 | 1.376 (3) | C11—H11 | 0.9300 |
C2—C3 | 1.379 (4) | C13—H13A | 0.9600 |
C2—H2 | 0.9300 | C13—H13B | 0.9600 |
C3—C4 | 1.386 (3) | C13—H13C | 0.9600 |
C3—H3 | 0.9300 | ||
C12—N1—C8 | 123.4 (2) | C5—C6—H6 | 120.7 |
C12—N1—H1 | 117.8 (19) | O4—C7—O3 | 125.3 (2) |
C8—N1—H1 | 118.7 (19) | O4—C7—C4 | 116.4 (2) |
C12—N2—H2A | 122.9 (19) | O3—C7—C4 | 118.3 (2) |
C12—N2—H2B | 121.1 (18) | N1—C8—C9 | 119.2 (3) |
H2A—N2—H2B | 116 (2) | N1—C8—C13 | 115.9 (3) |
O1—N3—O2 | 123.8 (2) | C9—C8—C13 | 124.9 (3) |
O1—N3—C1 | 118.5 (2) | C8—C9—C10 | 118.9 (3) |
O2—N3—C1 | 117.7 (2) | C8—C9—H9 | 120.5 |
C6—C1—C2 | 122.2 (2) | C10—C9—H9 | 120.5 |
C6—C1—N3 | 118.7 (2) | C11—C10—C9 | 121.7 (3) |
C2—C1—N3 | 119.1 (2) | C11—C10—H10 | 119.2 |
C1—C2—C3 | 118.5 (2) | C9—C10—H10 | 119.2 |
C1—C2—H2 | 120.7 | C10—C11—C12 | 119.0 (3) |
C3—C2—H2 | 120.7 | C10—C11—H11 | 120.5 |
C2—C3—C4 | 120.9 (2) | C12—C11—H11 | 120.5 |
C2—C3—H3 | 119.6 | N2—C12—N1 | 118.0 (2) |
C4—C3—H3 | 119.6 | N2—C12—C11 | 124.3 (2) |
C3—C4—C5 | 118.9 (2) | N1—C12—C11 | 117.7 (3) |
C3—C4—C7 | 121.6 (2) | C8—C13—H13A | 109.5 |
C5—C4—C7 | 119.5 (2) | C8—C13—H13B | 109.5 |
C6—C5—C4 | 120.8 (2) | H13A—C13—H13B | 109.5 |
C6—C5—H5 | 119.6 | C8—C13—H13C | 109.5 |
C4—C5—H5 | 119.6 | H13A—C13—H13C | 109.5 |
C1—C6—C5 | 118.6 (2) | H13B—C13—H13C | 109.5 |
C1—C6—H6 | 120.7 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O4i | 0.91 (2) | 1.75 (3) | 2.649 (3) | 173 (2) |
N2—H2A···O3ii | 0.89 (2) | 1.94 (2) | 2.812 (3) | 170 (2) |
N2—H2B···O3i | 0.89 (2) | 1.95 (2) | 2.838 (3) | 176 (2) |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, y−1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C6H9N2+·C7H4NO4− |
Mr | 275.26 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 298 |
a, b, c (Å) | 8.0487 (11), 6.7247 (9), 12.7467 (17) |
β (°) | 101.802 (7) |
V (Å3) | 675.33 (16) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.20 × 0.20 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.980, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4175, 1591, 1265 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.105, 1.04 |
No. of reflections | 1591 |
No. of parameters | 191 |
No. of restraints | 5 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.12, −0.17 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O4i | 0.91 (2) | 1.75 (3) | 2.649 (3) | 173 (2) |
N2—H2A···O3ii | 0.89 (2) | 1.94 (2) | 2.812 (3) | 169.9 (17) |
N2—H2B···O3i | 0.89 (2) | 1.95 (2) | 2.838 (3) | 176 (2) |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, y−1/2, −z. |
Acknowledgements
We acknowledge the Natural Science Foundation of China (grant No. 30973651/H3008) for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Considerable attention has been recently paid to the decrease the bitterness of foods and medicines (Suzuki et al., 2002; Suzuki et al., 2004; Hofmann, 1999; Shaw et al., 1984). 4-Nitrobenzoic acid is a bitter compound so, in order to investigate the influence of hydrogen bonds on its bitterness, the title compound was synthesized and its crystal structure is reported herein.
The asymmetric unit of the title salt consists of a 4-nitrobenzoate anion and a protonated 6-methyl-2-aminopyridinium cation (Fig. 1). The H atom of 4-nitrobenzoic acid is transferred to the N1 atom of 6-methyl-2-aminopyridine. All the bond lengths are within normal ranges (Allen et al., 1987) and comparable with the values observed in similar compounds (Saminathan & Sivakumar, 2007a,b; Näther et al., 1997; In et al., 1997; Harrison et al., 2007; Soriano-García et al., 1990; You et al., 2007). The C1—C6 benzene ring forms dihedral angles of 2.7 (2) and 0.2 (2)° with O1/N3/O2 and O3/C7/O4 planes, respectively. In the crystal structure (Fig. 2), intermolecular N—H···O hydrogen bonds (Table 1) link cations and anions into X-chains parallel to the b axis.