organic compounds
6-Chloro-9-(2-nitrophenylsulfonyl)-9H-purine
aState Key Laboratory of Biotherapy and Cancer Center, West China Hospital, West China Medical School, Sichuan University, Chengdu 610041, People's Republic of China
*Correspondence e-mail: yuluot@scu.edu.cn
The title compound, C11H6ClN5O4S, crystallized with two independent molecules in the The benzene ring makes dihedral angles of 66.46 (8) and 85.77 (9)° with the mean plane of the purine ring in the two molecules. In the crystal, intermolecular π–π stacking interactions [centroid–centroid distance = 3.8968 (12) Å], C—Cl⋯π interactions [Cl⋯centroid = 3.2505 (10) Å, C—Cl⋯centroid = 161.56 (18)°] and non-classical C—H⋯O and C—H⋯N hydrogen bonds link the molecules.
Related literature
For general background to the chemistry, biological activity and applications of purine derivatives, see: Scozzafava et al. (2001); Bakkestuen et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2006); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009) and Mercury (Macrae et al., 2006); software used to prepare material for publication: OLEX2.
Supporting information
10.1107/S1600536811003102/su2246sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811003102/su2246Isup2.hkl
A mixture of 6-chloropurine (0.463 g, 3 mmol), 2-nitrobenzenesulfonyl chloride (1.33 g, 6 mmol), Triethylamine (0.607 g, 6 mmol), DMAP (0.037 g, 0.3 mmol), THF (10 ml) and DCM (10 ml) was stirred for 12 h at room temperiture. The solvent was removed under vacuum. The residue was extracted with ethyl acetate (50 ml) and water (50 ml). The organic layer was washed three times with 30 ml ammonia solution (5 N) and 30 ml brine, and then dried with anhydrous sodium sulfate. The product was isolated by
on silica gel. Yield 0.712 g (69.8%). Crystals, suitable for X-ray analysis, were obtained by slow evaporation from a solution of ethyl acetate.All H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C). As the centroid of the benzene ring holds partial positive charge and the chlorine atom at the purine ring holds partial negative charge, the chlorine atom in one molecular is likely to be close to the benzene ring of another molecular (see Comment section), leading to the nitro groups of two neighbouring molecules approaching one another. Hence, a short O3···O3i distances [2.835 (2) Å] was observed in the crystal [symmetry code: (i) = -x, -y+2, -z+1)].
Data collection: CrysAlis PRO (Oxford Diffraction, 2006); cell
CrysAlis PRO (Oxford Diffraction, 2006); data reduction: CrysAlis PRO (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009) and Mercury (Macrae et al., 2006); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).C11H6ClN5O4S | Z = 4 |
Mr = 339.72 | F(000) = 688 |
Triclinic, P1 | Dx = 1.704 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.7107 Å |
a = 10.0055 (3) Å | Cell parameters from 5646 reflections |
b = 10.6931 (5) Å | θ = 3.1–29.1° |
c = 12.5378 (5) Å | µ = 0.47 mm−1 |
α = 93.692 (3)° | T = 293 K |
β = 97.136 (3)° | Block, colourless |
γ = 93.995 (3)° | 0.42 × 0.40 × 0.35 mm |
V = 1324.16 (9) Å3 |
Oxford Diffraction Xcalibur Eos diffractometer | 5403 independent reflections |
Radiation source: fine-focus sealed tube | 4389 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
Detector resolution: 16.0874 pixels mm-1 | θmax = 26.4°, θmin = 3.1° |
ω scans | h = −12→12 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) | k = −13→13 |
Tmin = 0.992, Tmax = 1.0 | l = −15→12 |
10984 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.092 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0398P)2 + 0.4744P] where P = (Fo2 + 2Fc2)/3 |
5403 reflections | (Δ/σ)max = 0.001 |
397 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
C11H6ClN5O4S | γ = 93.995 (3)° |
Mr = 339.72 | V = 1324.16 (9) Å3 |
Triclinic, P1 | Z = 4 |
a = 10.0055 (3) Å | Mo Kα radiation |
b = 10.6931 (5) Å | µ = 0.47 mm−1 |
c = 12.5378 (5) Å | T = 293 K |
α = 93.692 (3)° | 0.42 × 0.40 × 0.35 mm |
β = 97.136 (3)° |
Oxford Diffraction Xcalibur Eos diffractometer | 5403 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) | 4389 reflections with I > 2σ(I) |
Tmin = 0.992, Tmax = 1.0 | Rint = 0.018 |
10984 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.092 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.29 e Å−3 |
5403 reflections | Δρmin = −0.38 e Å−3 |
397 parameters |
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | −0.28373 (6) | 1.01998 (7) | 0.86805 (5) | 0.05386 (18) | |
Cl2 | −0.10359 (6) | 0.30928 (6) | 0.45966 (6) | 0.05239 (17) | |
S1 | 0.31769 (5) | 1.10135 (5) | 0.71476 (4) | 0.02990 (13) | |
S2 | 0.29292 (5) | 0.60128 (5) | 0.16093 (4) | 0.03061 (13) | |
O1 | 0.33387 (14) | 1.21495 (14) | 0.66297 (12) | 0.0373 (3) | |
O2 | 0.39441 (14) | 1.08250 (15) | 0.81453 (11) | 0.0403 (4) | |
O3 | 0.11604 (15) | 1.08355 (17) | 0.49868 (14) | 0.0495 (4) | |
O4 | 0.25354 (19) | 1.11017 (18) | 0.38100 (14) | 0.0578 (5) | |
O5 | 0.22219 (15) | 0.63512 (15) | 0.06322 (11) | 0.0405 (4) | |
O6 | 0.37133 (15) | 0.69221 (15) | 0.23407 (12) | 0.0446 (4) | |
O7 | 0.13521 (15) | 0.38259 (17) | 0.02911 (13) | 0.0468 (4) | |
O8 | 0.2366 (2) | 0.3163 (2) | −0.10209 (14) | 0.0737 (6) | |
N2 | −0.0813 (2) | 0.8795 (2) | 0.90380 (17) | 0.0505 (5) | |
N4 | 0.13616 (18) | 0.90598 (18) | 0.84106 (15) | 0.0419 (5) | |
N7 | −0.05280 (17) | 1.15618 (18) | 0.74289 (14) | 0.0375 (4) | |
N9 | 0.15488 (16) | 1.08978 (16) | 0.73571 (13) | 0.0308 (4) | |
N16 | 0.21920 (18) | 1.06359 (17) | 0.46067 (14) | 0.0369 (4) | |
N18 | 0.15591 (18) | 0.36990 (18) | 0.50525 (15) | 0.0402 (4) | |
N20 | 0.30089 (16) | 0.47424 (17) | 0.39320 (13) | 0.0335 (4) | |
N23 | −0.03515 (17) | 0.4610 (2) | 0.25421 (15) | 0.0409 (5) | |
N25 | 0.17329 (15) | 0.53615 (17) | 0.22797 (13) | 0.0303 (4) | |
N32 | 0.23641 (18) | 0.35675 (18) | −0.00913 (14) | 0.0387 (4) | |
C1 | −0.1216 (2) | 0.9794 (2) | 0.85674 (18) | 0.0391 (5) | |
C3 | 0.0440 (2) | 0.8481 (2) | 0.8933 (2) | 0.0517 (6) | |
H3 | 0.0702 | 0.7769 | 0.9267 | 0.062* | |
C5 | 0.0901 (2) | 1.0062 (2) | 0.79701 (16) | 0.0315 (4) | |
C6 | −0.0380 (2) | 1.0496 (2) | 0.79999 (16) | 0.0331 (5) | |
C8 | 0.0617 (2) | 1.1767 (2) | 0.70684 (17) | 0.0358 (5) | |
H8 | 0.0802 | 1.2434 | 0.6654 | 0.043* | |
C10 | 0.33847 (18) | 0.97337 (19) | 0.62325 (15) | 0.0287 (4) | |
C11 | 0.30456 (19) | 0.9715 (2) | 0.51123 (16) | 0.0310 (4) | |
C12 | 0.3430 (2) | 0.8782 (2) | 0.44359 (17) | 0.0372 (5) | |
H12 | 0.3214 | 0.8790 | 0.3693 | 0.045* | |
C13 | 0.4141 (2) | 0.7834 (2) | 0.48677 (19) | 0.0406 (5) | |
H13 | 0.4398 | 0.7196 | 0.4414 | 0.049* | |
C14 | 0.4473 (2) | 0.7827 (2) | 0.59658 (19) | 0.0413 (5) | |
H14 | 0.4940 | 0.7177 | 0.6251 | 0.050* | |
C15 | 0.4114 (2) | 0.8783 (2) | 0.66493 (18) | 0.0361 (5) | |
H15 | 0.4364 | 0.8785 | 0.7389 | 0.043* | |
C17 | 0.0491 (2) | 0.3758 (2) | 0.43304 (18) | 0.0356 (5) | |
C19 | 0.2746 (2) | 0.4186 (2) | 0.48183 (18) | 0.0396 (5) | |
H19 | 0.3484 | 0.4132 | 0.5338 | 0.047* | |
C21 | 0.18924 (19) | 0.48116 (19) | 0.32559 (15) | 0.0282 (4) | |
C22 | 0.05870 (19) | 0.4349 (2) | 0.33929 (17) | 0.0326 (5) | |
C24 | 0.0355 (2) | 0.5197 (2) | 0.19095 (17) | 0.0393 (5) | |
H24 | −0.0021 | 0.5484 | 0.1263 | 0.047* | |
C26 | 0.39753 (18) | 0.4774 (2) | 0.13725 (15) | 0.0290 (4) | |
C27 | 0.3671 (2) | 0.3761 (2) | 0.05959 (16) | 0.0322 (5) | |
C28 | 0.4589 (2) | 0.2887 (2) | 0.04330 (18) | 0.0429 (5) | |
H28 | 0.4371 | 0.2224 | −0.0090 | 0.051* | |
C29 | 0.5839 (2) | 0.3008 (3) | 0.1056 (2) | 0.0478 (6) | |
H29 | 0.6455 | 0.2410 | 0.0965 | 0.057* | |
C30 | 0.6173 (2) | 0.4008 (3) | 0.1809 (2) | 0.0495 (6) | |
H30 | 0.7022 | 0.4093 | 0.2215 | 0.059* | |
C31 | 0.5248 (2) | 0.4892 (2) | 0.19642 (17) | 0.0398 (5) | |
H31 | 0.5486 | 0.5570 | 0.2471 | 0.048* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0334 (3) | 0.0680 (4) | 0.0641 (4) | 0.0061 (3) | 0.0164 (3) | 0.0127 (3) |
Cl2 | 0.0409 (3) | 0.0498 (4) | 0.0706 (4) | −0.0040 (3) | 0.0228 (3) | 0.0140 (3) |
S1 | 0.0250 (2) | 0.0325 (3) | 0.0309 (3) | 0.0005 (2) | 0.00197 (19) | −0.0021 (2) |
S2 | 0.0309 (3) | 0.0314 (3) | 0.0304 (3) | 0.0021 (2) | 0.0060 (2) | 0.0050 (2) |
O1 | 0.0349 (8) | 0.0312 (8) | 0.0451 (9) | −0.0042 (6) | 0.0067 (6) | 0.0009 (7) |
O2 | 0.0343 (8) | 0.0509 (10) | 0.0332 (8) | 0.0074 (7) | −0.0038 (6) | −0.0041 (7) |
O3 | 0.0367 (8) | 0.0559 (11) | 0.0569 (10) | 0.0116 (8) | 0.0042 (8) | 0.0077 (9) |
O4 | 0.0723 (12) | 0.0616 (12) | 0.0418 (10) | 0.0071 (10) | 0.0082 (9) | 0.0178 (9) |
O5 | 0.0444 (8) | 0.0444 (9) | 0.0360 (8) | 0.0108 (7) | 0.0079 (7) | 0.0159 (7) |
O6 | 0.0454 (9) | 0.0379 (9) | 0.0480 (9) | −0.0064 (7) | 0.0069 (7) | −0.0073 (7) |
O7 | 0.0319 (8) | 0.0582 (11) | 0.0482 (9) | 0.0036 (8) | −0.0018 (7) | 0.0009 (8) |
O8 | 0.0699 (13) | 0.1006 (17) | 0.0438 (11) | 0.0237 (12) | −0.0109 (9) | −0.0293 (11) |
N2 | 0.0436 (11) | 0.0514 (13) | 0.0603 (13) | 0.0045 (10) | 0.0126 (10) | 0.0212 (11) |
N4 | 0.0382 (10) | 0.0404 (11) | 0.0492 (11) | 0.0080 (9) | 0.0064 (8) | 0.0125 (9) |
N7 | 0.0316 (9) | 0.0404 (11) | 0.0415 (10) | 0.0076 (8) | 0.0038 (8) | 0.0086 (8) |
N9 | 0.0275 (8) | 0.0324 (10) | 0.0333 (9) | 0.0040 (7) | 0.0050 (7) | 0.0040 (7) |
N16 | 0.0384 (10) | 0.0354 (10) | 0.0334 (10) | −0.0020 (8) | −0.0039 (8) | −0.0018 (8) |
N18 | 0.0408 (10) | 0.0407 (11) | 0.0416 (11) | 0.0053 (9) | 0.0089 (8) | 0.0131 (9) |
N20 | 0.0270 (8) | 0.0409 (11) | 0.0328 (9) | 0.0050 (8) | 0.0018 (7) | 0.0070 (8) |
N23 | 0.0255 (9) | 0.0576 (13) | 0.0402 (11) | 0.0048 (8) | 0.0030 (8) | 0.0080 (9) |
N25 | 0.0247 (8) | 0.0407 (10) | 0.0267 (8) | 0.0062 (7) | 0.0036 (7) | 0.0072 (7) |
N32 | 0.0416 (10) | 0.0380 (11) | 0.0344 (10) | 0.0059 (9) | −0.0034 (8) | −0.0013 (8) |
C1 | 0.0314 (11) | 0.0464 (14) | 0.0392 (12) | 0.0017 (10) | 0.0040 (9) | 0.0042 (10) |
C3 | 0.0484 (14) | 0.0478 (15) | 0.0629 (17) | 0.0086 (12) | 0.0090 (12) | 0.0244 (13) |
C5 | 0.0313 (10) | 0.0326 (11) | 0.0300 (11) | 0.0010 (9) | 0.0025 (8) | 0.0017 (9) |
C6 | 0.0290 (10) | 0.0370 (12) | 0.0328 (11) | 0.0028 (9) | 0.0018 (8) | 0.0038 (9) |
C8 | 0.0333 (11) | 0.0370 (12) | 0.0380 (12) | 0.0063 (9) | 0.0034 (9) | 0.0087 (10) |
C10 | 0.0252 (9) | 0.0301 (11) | 0.0303 (10) | −0.0019 (8) | 0.0056 (8) | −0.0009 (8) |
C11 | 0.0254 (10) | 0.0315 (11) | 0.0349 (11) | −0.0024 (8) | 0.0016 (8) | 0.0019 (9) |
C12 | 0.0353 (11) | 0.0427 (13) | 0.0323 (11) | −0.0029 (10) | 0.0060 (9) | −0.0043 (10) |
C13 | 0.0382 (11) | 0.0382 (13) | 0.0465 (13) | 0.0031 (10) | 0.0136 (10) | −0.0057 (10) |
C14 | 0.0368 (11) | 0.0366 (13) | 0.0531 (14) | 0.0093 (10) | 0.0109 (10) | 0.0058 (11) |
C15 | 0.0347 (11) | 0.0385 (12) | 0.0360 (12) | 0.0053 (9) | 0.0056 (9) | 0.0051 (10) |
C17 | 0.0337 (11) | 0.0309 (12) | 0.0449 (13) | 0.0022 (9) | 0.0140 (10) | 0.0067 (10) |
C19 | 0.0353 (11) | 0.0474 (14) | 0.0367 (12) | 0.0079 (10) | 0.0009 (9) | 0.0114 (10) |
C21 | 0.0276 (10) | 0.0286 (11) | 0.0292 (10) | 0.0050 (8) | 0.0061 (8) | 0.0012 (8) |
C22 | 0.0266 (10) | 0.0347 (12) | 0.0374 (11) | 0.0025 (9) | 0.0068 (8) | 0.0040 (9) |
C24 | 0.0275 (10) | 0.0553 (15) | 0.0357 (12) | 0.0113 (10) | −0.0001 (9) | 0.0076 (11) |
C26 | 0.0259 (9) | 0.0358 (11) | 0.0268 (10) | 0.0029 (8) | 0.0062 (8) | 0.0083 (9) |
C27 | 0.0313 (10) | 0.0375 (12) | 0.0288 (10) | 0.0054 (9) | 0.0034 (8) | 0.0084 (9) |
C28 | 0.0493 (13) | 0.0434 (14) | 0.0397 (13) | 0.0146 (11) | 0.0122 (10) | 0.0063 (10) |
C29 | 0.0393 (12) | 0.0632 (17) | 0.0484 (14) | 0.0233 (12) | 0.0163 (11) | 0.0208 (13) |
C30 | 0.0276 (11) | 0.0752 (19) | 0.0481 (14) | 0.0081 (12) | 0.0040 (10) | 0.0210 (14) |
C31 | 0.0281 (10) | 0.0561 (15) | 0.0346 (12) | −0.0015 (10) | 0.0026 (9) | 0.0070 (11) |
Cl1—C1 | 1.728 (2) | N25—C24 | 1.394 (3) |
Cl2—C17 | 1.720 (2) | N32—C27 | 1.468 (3) |
S1—O1 | 1.4226 (15) | C1—C6 | 1.378 (3) |
S1—O2 | 1.4178 (15) | C3—H3 | 0.9300 |
S1—N9 | 1.6794 (16) | C5—C6 | 1.397 (3) |
S1—C10 | 1.769 (2) | C8—H8 | 0.9300 |
S2—O5 | 1.4177 (15) | C10—C11 | 1.402 (3) |
S2—O6 | 1.4150 (16) | C10—C15 | 1.385 (3) |
S2—N25 | 1.6833 (16) | C11—C12 | 1.374 (3) |
S2—C26 | 1.777 (2) | C12—H12 | 0.9300 |
O3—N16 | 1.216 (2) | C12—C13 | 1.379 (3) |
O4—N16 | 1.221 (2) | C13—H13 | 0.9300 |
O7—N32 | 1.214 (2) | C13—C14 | 1.376 (3) |
O8—N32 | 1.217 (2) | C14—H14 | 0.9300 |
N2—C1 | 1.317 (3) | C14—C15 | 1.387 (3) |
N2—C3 | 1.340 (3) | C15—H15 | 0.9300 |
N4—C3 | 1.336 (3) | C17—C22 | 1.380 (3) |
N4—C5 | 1.322 (3) | C19—H19 | 0.9300 |
N7—C6 | 1.391 (3) | C21—C22 | 1.399 (3) |
N7—C8 | 1.293 (3) | C24—H24 | 0.9300 |
N9—C5 | 1.393 (3) | C26—C27 | 1.400 (3) |
N9—C8 | 1.395 (3) | C26—C31 | 1.385 (3) |
N16—C11 | 1.471 (3) | C27—C28 | 1.379 (3) |
N18—C17 | 1.320 (3) | C28—H28 | 0.9300 |
N18—C19 | 1.337 (3) | C28—C29 | 1.382 (3) |
N20—C19 | 1.339 (3) | C29—H29 | 0.9300 |
N20—C21 | 1.325 (2) | C29—C30 | 1.374 (4) |
N23—C22 | 1.387 (3) | C30—H30 | 0.9300 |
N23—C24 | 1.290 (3) | C30—C31 | 1.390 (3) |
N25—C21 | 1.388 (2) | C31—H31 | 0.9300 |
O1—S1—N9 | 104.73 (9) | C6—C1—Cl1 | 120.78 (17) |
O1—S1—C10 | 108.86 (9) | C8—N7—C6 | 104.56 (17) |
O2—S1—O1 | 121.88 (10) | C8—N9—S1 | 125.05 (14) |
O2—S1—N9 | 106.39 (9) | C10—C11—N16 | 122.06 (18) |
O2—S1—C10 | 107.43 (9) | C10—C15—C14 | 120.1 (2) |
O3—N16—O4 | 124.65 (19) | C10—C15—H15 | 119.9 |
O3—N16—C11 | 117.33 (18) | C11—C10—S1 | 124.35 (16) |
O4—N16—C11 | 117.93 (18) | C11—C12—H12 | 120.3 |
O5—S2—N25 | 105.10 (8) | C11—C12—C13 | 119.4 (2) |
O5—S2—C26 | 111.24 (9) | C12—C11—N16 | 116.63 (19) |
O6—S2—O5 | 121.33 (10) | C12—C11—C10 | 121.2 (2) |
O6—S2—N25 | 106.67 (9) | C12—C13—H13 | 119.8 |
O6—S2—C26 | 106.90 (10) | C13—C12—H12 | 120.3 |
O7—N32—O8 | 123.88 (19) | C13—C14—H14 | 119.8 |
O7—N32—C27 | 118.70 (17) | C13—C14—C15 | 120.4 (2) |
O8—N32—C27 | 117.42 (18) | C14—C13—C12 | 120.3 (2) |
N2—C1—Cl1 | 117.83 (17) | C14—C13—H13 | 119.8 |
N2—C1—C6 | 121.4 (2) | C14—C15—H15 | 119.9 |
N2—C3—H3 | 115.9 | C15—C10—S1 | 116.41 (15) |
N4—C3—N2 | 128.3 (2) | C15—C10—C11 | 118.50 (19) |
N4—C3—H3 | 115.9 | C15—C14—H14 | 119.8 |
N4—C5—N9 | 128.60 (18) | C17—N18—C19 | 117.34 (18) |
N4—C5—C6 | 126.78 (19) | C17—C22—N23 | 133.58 (18) |
N7—C6—C5 | 111.24 (17) | C17—C22—C21 | 115.02 (18) |
N7—C8—N9 | 113.85 (19) | C21—N20—C19 | 111.42 (17) |
N7—C8—H8 | 123.1 | C21—N25—S2 | 128.61 (13) |
N9—S1—C10 | 106.61 (9) | C21—N25—C24 | 105.71 (16) |
N9—C5—C6 | 104.60 (17) | C22—C17—Cl2 | 120.68 (17) |
N9—C8—H8 | 123.1 | C24—N23—C22 | 104.34 (17) |
N18—C17—Cl2 | 118.10 (16) | C24—N25—S2 | 125.56 (14) |
N18—C17—C22 | 121.22 (18) | C26—C27—N32 | 122.17 (18) |
N18—C19—N20 | 128.4 (2) | C26—C31—C30 | 120.7 (2) |
N18—C19—H19 | 115.8 | C26—C31—H31 | 119.7 |
N20—C19—H19 | 115.8 | C27—C26—S2 | 126.17 (15) |
N20—C21—N25 | 128.98 (17) | C27—C28—H28 | 120.3 |
N20—C21—C22 | 126.52 (18) | C27—C28—C29 | 119.3 (2) |
N23—C22—C21 | 111.38 (17) | C28—C27—N32 | 116.2 (2) |
N23—C24—N25 | 114.08 (18) | C28—C27—C26 | 121.6 (2) |
N23—C24—H24 | 123.0 | C28—C29—H29 | 119.9 |
N25—S2—C26 | 104.22 (9) | C29—C28—H28 | 120.3 |
N25—C21—C22 | 104.48 (16) | C29—C30—H30 | 119.9 |
N25—C24—H24 | 123.0 | C29—C30—C31 | 120.3 (2) |
C1—N2—C3 | 117.3 (2) | C30—C29—C28 | 120.2 (2) |
C1—C6—N7 | 133.91 (19) | C30—C29—H29 | 119.9 |
C1—C6—C5 | 114.85 (19) | C30—C31—H31 | 119.7 |
C5—N4—C3 | 111.40 (19) | C31—C26—S2 | 115.78 (17) |
C5—N9—S1 | 128.59 (14) | C31—C26—C27 | 117.84 (19) |
C5—N9—C8 | 105.75 (16) | C31—C30—H30 | 119.9 |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O6 | 0.93 | 2.60 | 3.222 (3) | 125 |
C15—H15···O2 | 0.93 | 2.41 | 2.814 (3) | 106 |
C24—H24···O7i | 0.93 | 2.41 | 3.327 (3) | 170 |
C28—H28···O2ii | 0.93 | 2.56 | 3.469 (3) | 165 |
C30—H30···N23iii | 0.93 | 2.62 | 3.489 (3) | 155 |
C31—H31···O6 | 0.93 | 2.36 | 2.794 (3) | 108 |
Symmetry codes: (i) −x, −y+1, −z; (ii) x, y−1, z−1; (iii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C11H6ClN5O4S |
Mr | 339.72 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 10.0055 (3), 10.6931 (5), 12.5378 (5) |
α, β, γ (°) | 93.692 (3), 97.136 (3), 93.995 (3) |
V (Å3) | 1324.16 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.47 |
Crystal size (mm) | 0.42 × 0.40 × 0.35 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Eos diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2006) |
Tmin, Tmax | 0.992, 1.0 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10984, 5403, 4389 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.092, 1.02 |
No. of reflections | 5403 |
No. of parameters | 397 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.38 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009) and Mercury (Macrae et al., 2006), OLEX2 (Dolomanov et al., 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O6 | 0.93 | 2.60 | 3.222 (3) | 125 |
C24—H24···O7i | 0.93 | 2.41 | 3.327 (3) | 170 |
C28—H28···O2ii | 0.93 | 2.56 | 3.469 (3) | 165 |
C30—H30···N23iii | 0.93 | 2.62 | 3.489 (3) | 155 |
Symmetry codes: (i) −x, −y+1, −z; (ii) x, y−1, z−1; (iii) x+1, y, z. |
Acknowledgements
We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.
References
Bakkestuen, A. K., Gundersen, L. L. & Utenova, B. T. (2005). J. Med. Chem. 45, 2710–2723. Web of Science CrossRef Google Scholar
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Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Purine derivatives are of great importance owing to their wide-ranging biological properties (Scozzafava et al., 2001; Bakkestuen et al., 2005). As there are several kinds of tautomers in purine derivatives, it is difficult to determine their structures by NMR, MS or IR sepctroscopy. The title compound is one of the key intermediates in our synthetic investigations of antimicrobial agents. Here we determined the accurate structure of the title compound by X-ray analysis.
As shown in Fig. 1, the title compound crystallized with two independent molecules (A and B) in the asymmetric unit. The conformation of the molecules is different. The benzene ring makes a dihedral angle of 66.46 (8)° with the mean plane of the purine ring in molecule A, while in molecule B this same angle is 85.77 (9)°.
In the crystal, the two molecules and symmetry related molecules, are linked into a three-dimensional network by intermolecular π···π stacking interactions involving ring (C10-C15) and a symmetry related ring (code: 1-x, 2-x, 1-z)], with a centroid-to-centroid distance of 3.8968 (12) Å, and nonclassical C—H···O and C—H···N hydrogen bonds (Table 1 and Fig. 2). There are also C-Cl···π interactions involving chlorine Cl2 and ring (C10-C15 = Cg), with a Cl···centroid distance of 3.2505 (10) Å, angle C17-Cl2···Cgi being 161.56 (18)° [symmetry code: (i) -x, -y+1, -z+1] - see Fig. 1.