metal-organic compounds
Benzene-1,3-diammonium bis(pyridine-2,6-dicarboxylato-κ3O2,N,O6)cobaltate(II) pentahydrate
aDepartment of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran, bDepartment of Chemistry, Basic Science Faculty, East Tehran Branch, Islamic Azad University, Qiam Dasht, Tehran, Iran, and cDepartment of Chemistry, Shahid Beheshti University, G. C., Evin, Tehran 1983963113, Iran
*Correspondence e-mail: h_pasdar@iau-tnb.ac.ir
In the title compound, (C6H10N2)[Co(C7H3NO4)2]·5H2O, the CoII ion is six-coordinated in an N2O4 environment by two pyridine-2,6-dicarboxylate (pydc) ligands, having a distorted octahedral geometry. The crystal packing is stabilized by intermolecular N—H⋯O, O—H⋯O and weak C—H⋯O hydrogen bonds. There are also π–π interactions between the pyridine rings of the pydc ligands and between the pydc ligands and the benzene-1,3-diammonium cations, with centroid–centroid distances of 3.4575 (15) and 3.7521 (15) Å.
Related literature
For general background to proton-transfer compounds, see: Aghabozorg et al. (2008). For related structures, see: Beatty et al. (2002); Dobrzycki & Woźniak (2008); Imaz et al. (2007); Pasdar et al. (2010, 2011a,b).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2005); cell X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536811009858/hy2407sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811009858/hy2407Isup2.hkl
A solution of pydcH2 (162 mg, 0.9 mmol) in 17 ml water was added to a solution of bda (108 mg, 0.6 mmol) in 11 ml water with stirring for an hour, and then a solution of CoCl2.6H2O (118 mg, 0.6 mmol) in 5 ml water was added. The resulting solution was stirred for 2 h and dark pink crystals of the title compound suitable for X-ray analysis were obtained after one week (m.p. 260°C).
H atoms of water molecules and N—H groups of (bdaH2)2+ cation were found in a difference Fourier map and refined isotropically. H9B and H13A were refined with distance restraints of O—H = 0.76 (3) and 0.86 (3) Å. H atoms of the aromatic rings were positioned geometrically and refined as riding atoms, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C).
Data collection: X-AREA (Stoe & Cie, 2005); cell
X-AREA (Stoe & Cie, 2005); data reduction: X-AREA (Stoe & Cie, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. | |
Fig. 2. The packing diagram of the title compound, viewed down the a axis. Intermolecular N—H···O, O—H···O and weak C—H···O hydrogen bonds are shown as blue dashed lines. | |
Fig. 3. The packing diagram of the title compound, showing intermolecular π–π interactions (dashed lines) between the pyridine rings of the pydc ligands [centroid–centroid distance = 3.4575 (15) Å] and between the benzene rings of the (bdaH2)2+ cations and the pyridine rings of the pydc ligands [centroid–centroid distance = 3.7521 (15) Å]. Water molecules have been omitted for clarity. |
(C6H10N2)[Co(C7H3NO4)2]·5H2O | F(000) = 1220 |
Mr = 589.38 | Dx = 1.571 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6702 reflections |
a = 7.5236 (2) Å | θ = 2.2–29.2° |
b = 18.0200 (7) Å | µ = 0.76 mm−1 |
c = 18.7122 (6) Å | T = 298 K |
β = 100.883 (2)° | Needle, dark pink |
V = 2491.29 (14) Å3 | 0.50 × 0.15 × 0.10 mm |
Z = 4 |
Stoe IPDS-2 diffractometer | 5366 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.064 |
Graphite monochromator | θmax = 29.2°, θmin = 2.2° |
ω scans | h = −10→9 |
19874 measured reflections | k = −23→24 |
6702 independent reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.21 | w = 1/[σ2(Fo2) + (0.031P)2 + 1.7282P] where P = (Fo2 + 2Fc2)/3 |
6702 reflections | (Δ/σ)max = 0.007 |
407 parameters | Δρmax = 0.34 e Å−3 |
2 restraints | Δρmin = −0.32 e Å−3 |
(C6H10N2)[Co(C7H3NO4)2]·5H2O | V = 2491.29 (14) Å3 |
Mr = 589.38 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.5236 (2) Å | µ = 0.76 mm−1 |
b = 18.0200 (7) Å | T = 298 K |
c = 18.7122 (6) Å | 0.50 × 0.15 × 0.10 mm |
β = 100.883 (2)° |
Stoe IPDS-2 diffractometer | 5366 reflections with I > 2σ(I) |
19874 measured reflections | Rint = 0.064 |
6702 independent reflections |
R[F2 > 2σ(F2)] = 0.055 | 2 restraints |
wR(F2) = 0.113 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.21 | Δρmax = 0.34 e Å−3 |
6702 reflections | Δρmin = −0.32 e Å−3 |
407 parameters |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.64449 (5) | 0.982592 (19) | 0.312577 (16) | 0.02479 (9) | |
O1 | 0.8779 (3) | 1.03503 (13) | 0.28454 (10) | 0.0426 (5) | |
O2 | 1.0026 (3) | 1.06589 (13) | 0.19026 (12) | 0.0481 (6) | |
O3 | 0.4033 (3) | 0.91494 (11) | 0.28828 (9) | 0.0341 (4) | |
O4 | 0.2123 (3) | 0.86302 (14) | 0.19579 (11) | 0.0471 (5) | |
O5 | 0.4980 (3) | 1.08443 (11) | 0.31941 (10) | 0.0355 (4) | |
O6 | 0.4177 (3) | 1.16437 (10) | 0.39852 (11) | 0.0348 (4) | |
O7 | 0.8000 (3) | 0.88934 (11) | 0.35988 (9) | 0.0367 (4) | |
O8 | 0.9307 (3) | 0.83948 (12) | 0.46576 (11) | 0.0448 (5) | |
O9 | 0.3372 (3) | 0.77720 (13) | 0.34605 (11) | 0.0393 (5) | |
O10 | 0.5258 (5) | 0.72787 (18) | 0.48332 (16) | 0.0614 (7) | |
O11 | 0.8434 (5) | 0.69320 (18) | 0.43693 (16) | 0.0659 (7) | |
O12 | 0.3223 (4) | 0.5943 (2) | 0.42544 (17) | 0.0670 (8) | |
O13 | 0.0351 (4) | 0.65086 (15) | 0.32207 (15) | 0.0519 (6) | |
N1 | 0.6128 (3) | 0.96490 (11) | 0.20453 (10) | 0.0251 (4) | |
N2 | 0.6870 (3) | 1.00350 (10) | 0.42057 (10) | 0.0220 (4) | |
N3 | 0.9659 (3) | 0.80230 (14) | 0.27389 (12) | 0.0292 (4) | |
N4 | 0.3688 (3) | 0.68621 (13) | 0.22490 (13) | 0.0282 (4) | |
C1 | 0.7387 (4) | 0.99011 (14) | 0.16927 (13) | 0.0288 (5) | |
C2 | 0.7267 (4) | 0.97588 (17) | 0.09568 (14) | 0.0392 (6) | |
H2 | 0.8153 | 0.9927 | 0.0711 | 0.047* | |
C3 | 0.5791 (4) | 0.93595 (17) | 0.05974 (14) | 0.0404 (7) | |
H3 | 0.5683 | 0.9257 | 0.0104 | 0.048* | |
C4 | 0.4476 (4) | 0.91124 (16) | 0.09695 (13) | 0.0356 (6) | |
H4 | 0.3470 | 0.8851 | 0.0731 | 0.043* | |
C5 | 0.4702 (3) | 0.92658 (14) | 0.17044 (12) | 0.0261 (5) | |
C6 | 0.8870 (4) | 1.03362 (15) | 0.21823 (14) | 0.0327 (5) | |
C7 | 0.3483 (3) | 0.89943 (14) | 0.22113 (13) | 0.0290 (5) | |
C8 | 0.6188 (3) | 1.06555 (13) | 0.44373 (12) | 0.0242 (4) | |
C9 | 0.6530 (4) | 1.08338 (15) | 0.51711 (13) | 0.0301 (5) | |
H9 | 0.6071 | 1.1268 | 0.5334 | 0.036* | |
C10 | 0.7571 (4) | 1.03510 (15) | 0.56585 (13) | 0.0309 (5) | |
H10 | 0.7816 | 1.0462 | 0.6153 | 0.037* | |
C11 | 0.8246 (3) | 0.97036 (14) | 0.54083 (12) | 0.0266 (5) | |
H11 | 0.8943 | 0.9375 | 0.5728 | 0.032* | |
C12 | 0.7848 (3) | 0.95620 (13) | 0.46633 (12) | 0.0228 (4) | |
C13 | 0.5029 (3) | 1.10953 (13) | 0.38304 (13) | 0.0261 (5) | |
C14 | 0.8452 (3) | 0.88883 (14) | 0.42920 (13) | 0.0277 (5) | |
C15 | 0.8107 (3) | 0.77539 (13) | 0.22120 (12) | 0.0242 (4) | |
C16 | 0.8140 (4) | 0.77813 (15) | 0.14768 (13) | 0.0304 (5) | |
H16 | 0.9120 | 0.7987 | 0.1310 | 0.036* | |
C17 | 0.6676 (4) | 0.74947 (17) | 0.09941 (13) | 0.0359 (6) | |
H17 | 0.6678 | 0.7504 | 0.0497 | 0.043* | |
C18 | 0.5211 (4) | 0.71944 (15) | 0.12409 (13) | 0.0312 (5) | |
H18 | 0.4236 | 0.7002 | 0.0913 | 0.037* | |
C19 | 0.5212 (3) | 0.71837 (13) | 0.19752 (13) | 0.0250 (5) | |
C20 | 0.6661 (3) | 0.74587 (14) | 0.24743 (12) | 0.0266 (5) | |
H20 | 0.6659 | 0.7445 | 0.2971 | 0.032* | |
H3A | 1.041 (5) | 0.8267 (19) | 0.2526 (18) | 0.042 (9)* | |
H4A | 0.342 (5) | 0.714 (2) | 0.261 (2) | 0.057 (11)* | |
H9A | 0.381 (5) | 0.819 (2) | 0.3366 (18) | 0.043 (9)* | |
H10A | 0.543 (7) | 0.755 (3) | 0.519 (3) | 0.093 (18)* | |
H11A | 0.903 (7) | 0.741 (3) | 0.439 (3) | 0.087 (16)* | |
H12A | 0.387 (9) | 0.634 (4) | 0.448 (3) | 0.12 (2)* | |
H13A | 0.125 (6) | 0.633 (3) | 0.352 (3) | 0.11 (2)* | |
H3B | 0.929 (5) | 0.8373 (19) | 0.3069 (18) | 0.044 (9)* | |
H4B | 0.403 (5) | 0.642 (2) | 0.2465 (19) | 0.052 (10)* | |
H9B | 0.385 (5) | 0.763 (2) | 0.3831 (17) | 0.055 (12)* | |
H10B | 0.624 (7) | 0.719 (3) | 0.475 (2) | 0.068 (15)* | |
H11B | 0.886 (7) | 0.671 (3) | 0.403 (3) | 0.081 (15)* | |
H12B | 0.380 (7) | 0.580 (3) | 0.401 (3) | 0.074 (16)* | |
H13B | 0.033 (7) | 0.624 (3) | 0.289 (3) | 0.089 (17)* | |
H3C | 1.035 (5) | 0.762 (2) | 0.301 (2) | 0.057 (11)* | |
H4C | 0.277 (5) | 0.6805 (19) | 0.1891 (19) | 0.045 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.02959 (17) | 0.02648 (16) | 0.01790 (13) | −0.00151 (14) | 0.00348 (11) | −0.00162 (12) |
O1 | 0.0403 (11) | 0.0565 (14) | 0.0311 (9) | −0.0213 (10) | 0.0069 (8) | −0.0076 (9) |
O2 | 0.0504 (13) | 0.0507 (13) | 0.0487 (12) | −0.0263 (11) | 0.0232 (10) | −0.0087 (10) |
O3 | 0.0383 (10) | 0.0402 (10) | 0.0258 (8) | −0.0118 (8) | 0.0109 (7) | −0.0033 (7) |
O4 | 0.0383 (11) | 0.0640 (15) | 0.0388 (10) | −0.0237 (10) | 0.0065 (9) | −0.0065 (10) |
O5 | 0.0451 (11) | 0.0319 (10) | 0.0269 (8) | 0.0085 (8) | 0.0001 (8) | 0.0007 (7) |
O6 | 0.0304 (10) | 0.0303 (10) | 0.0425 (10) | 0.0070 (8) | 0.0039 (8) | −0.0020 (8) |
O7 | 0.0486 (12) | 0.0358 (10) | 0.0244 (8) | 0.0155 (9) | 0.0036 (8) | −0.0048 (7) |
O8 | 0.0575 (14) | 0.0389 (11) | 0.0366 (10) | 0.0198 (10) | 0.0052 (9) | 0.0045 (9) |
O9 | 0.0457 (12) | 0.0370 (12) | 0.0338 (10) | −0.0053 (9) | 0.0035 (9) | −0.0008 (9) |
O10 | 0.0624 (19) | 0.0697 (19) | 0.0494 (14) | 0.0069 (15) | 0.0035 (13) | −0.0104 (13) |
O11 | 0.082 (2) | 0.0566 (17) | 0.0617 (17) | 0.0052 (15) | 0.0205 (15) | −0.0063 (14) |
O12 | 0.0659 (19) | 0.084 (2) | 0.0579 (16) | 0.0049 (17) | 0.0296 (15) | −0.0025 (15) |
O13 | 0.0587 (16) | 0.0464 (14) | 0.0483 (13) | 0.0015 (11) | 0.0047 (12) | −0.0124 (11) |
N1 | 0.0312 (11) | 0.0235 (10) | 0.0206 (8) | −0.0037 (8) | 0.0054 (7) | −0.0010 (7) |
N2 | 0.0222 (9) | 0.0237 (10) | 0.0203 (8) | −0.0007 (7) | 0.0045 (7) | −0.0012 (7) |
N3 | 0.0210 (10) | 0.0362 (12) | 0.0301 (10) | −0.0029 (9) | 0.0036 (8) | −0.0084 (9) |
N4 | 0.0239 (10) | 0.0273 (11) | 0.0331 (11) | −0.0015 (8) | 0.0048 (9) | −0.0008 (9) |
C1 | 0.0346 (13) | 0.0261 (12) | 0.0271 (11) | −0.0048 (10) | 0.0093 (9) | 0.0001 (9) |
C2 | 0.0521 (17) | 0.0404 (15) | 0.0294 (12) | −0.0096 (13) | 0.0184 (11) | −0.0011 (11) |
C3 | 0.0572 (19) | 0.0425 (16) | 0.0224 (11) | −0.0083 (13) | 0.0099 (11) | −0.0042 (11) |
C4 | 0.0434 (15) | 0.0367 (14) | 0.0247 (11) | −0.0083 (12) | 0.0009 (10) | −0.0068 (10) |
C5 | 0.0276 (12) | 0.0261 (12) | 0.0242 (10) | −0.0022 (9) | 0.0036 (9) | 0.0001 (9) |
C6 | 0.0352 (13) | 0.0302 (13) | 0.0346 (12) | −0.0081 (10) | 0.0118 (10) | −0.0034 (10) |
C7 | 0.0279 (12) | 0.0311 (13) | 0.0282 (11) | −0.0048 (10) | 0.0058 (9) | −0.0014 (10) |
C8 | 0.0227 (11) | 0.0241 (11) | 0.0263 (10) | −0.0014 (8) | 0.0056 (8) | −0.0023 (9) |
C9 | 0.0322 (13) | 0.0304 (12) | 0.0285 (11) | −0.0010 (10) | 0.0077 (10) | −0.0102 (10) |
C10 | 0.0337 (13) | 0.0384 (14) | 0.0204 (10) | −0.0044 (10) | 0.0044 (9) | −0.0079 (9) |
C11 | 0.0249 (11) | 0.0335 (13) | 0.0212 (10) | −0.0012 (9) | 0.0036 (8) | 0.0022 (9) |
C12 | 0.0205 (10) | 0.0271 (11) | 0.0213 (10) | 0.0000 (8) | 0.0053 (8) | 0.0002 (8) |
C13 | 0.0223 (11) | 0.0249 (11) | 0.0307 (11) | −0.0024 (9) | 0.0036 (9) | −0.0003 (9) |
C14 | 0.0277 (12) | 0.0284 (12) | 0.0266 (11) | 0.0023 (9) | 0.0043 (9) | 0.0008 (9) |
C15 | 0.0194 (10) | 0.0261 (11) | 0.0263 (10) | 0.0018 (9) | 0.0022 (8) | −0.0058 (9) |
C16 | 0.0287 (12) | 0.0345 (13) | 0.0295 (12) | −0.0015 (10) | 0.0094 (10) | −0.0021 (10) |
C17 | 0.0377 (15) | 0.0482 (16) | 0.0219 (11) | −0.0040 (12) | 0.0060 (10) | −0.0036 (11) |
C18 | 0.0298 (13) | 0.0331 (13) | 0.0284 (11) | −0.0040 (10) | −0.0004 (9) | −0.0074 (10) |
C19 | 0.0200 (11) | 0.0238 (11) | 0.0312 (11) | 0.0007 (9) | 0.0044 (9) | −0.0027 (9) |
C20 | 0.0252 (12) | 0.0310 (12) | 0.0235 (10) | −0.0004 (9) | 0.0042 (9) | −0.0035 (9) |
Co1—N1 | 2.0160 (19) | N4—C19 | 1.461 (3) |
Co1—N2 | 2.0209 (18) | N4—H4A | 0.89 (4) |
Co1—O7 | 2.1414 (19) | N4—H4B | 0.90 (4) |
Co1—O1 | 2.145 (2) | N4—H4C | 0.88 (4) |
Co1—O5 | 2.1570 (19) | C1—C2 | 1.387 (3) |
Co1—O3 | 2.1621 (19) | C1—C6 | 1.521 (4) |
O1—C6 | 1.256 (3) | C2—C3 | 1.386 (4) |
O2—C6 | 1.241 (3) | C2—H2 | 0.9300 |
O3—C7 | 1.277 (3) | C3—C4 | 1.387 (4) |
O4—C7 | 1.233 (3) | C3—H3 | 0.9300 |
O5—C13 | 1.268 (3) | C4—C5 | 1.381 (3) |
O6—C13 | 1.242 (3) | C4—H4 | 0.9300 |
O7—C14 | 1.277 (3) | C5—C7 | 1.519 (3) |
O8—C14 | 1.228 (3) | C8—C9 | 1.386 (3) |
O9—H9A | 0.86 (4) | C8—C13 | 1.518 (3) |
O9—H9B | 0.76 (3) | C9—C10 | 1.390 (4) |
O10—H10A | 0.81 (6) | C9—H9 | 0.9300 |
O10—H10B | 0.80 (5) | C10—C11 | 1.389 (4) |
O11—H11A | 0.97 (5) | C10—H10 | 0.9300 |
O11—H11B | 0.86 (5) | C11—C12 | 1.393 (3) |
O12—H12A | 0.93 (7) | C11—H11 | 0.9300 |
O12—H12B | 0.73 (5) | C12—C14 | 1.511 (3) |
O13—H13A | 0.86 (3) | C15—C16 | 1.381 (3) |
O13—H13B | 0.78 (5) | C15—C20 | 1.382 (3) |
N1—C5 | 1.332 (3) | C16—C17 | 1.386 (4) |
N1—C1 | 1.333 (3) | C16—H16 | 0.9300 |
N2—C12 | 1.328 (3) | C17—C18 | 1.383 (4) |
N2—C8 | 1.336 (3) | C17—H17 | 0.9300 |
N3—C15 | 1.462 (3) | C18—C19 | 1.374 (3) |
N3—H3A | 0.87 (4) | C18—H18 | 0.9300 |
N3—H3B | 0.96 (4) | C19—C20 | 1.386 (3) |
N3—H3C | 0.98 (4) | C20—H20 | 0.9300 |
N1—Co1—N2 | 177.16 (8) | C5—C4—C3 | 118.0 (2) |
N1—Co1—O7 | 104.03 (7) | C5—C4—H4 | 121.0 |
N2—Co1—O7 | 76.23 (7) | C3—C4—H4 | 121.0 |
N1—Co1—O1 | 76.81 (8) | N1—C5—C4 | 121.1 (2) |
N2—Co1—O1 | 100.37 (7) | N1—C5—C7 | 113.2 (2) |
O7—Co1—O1 | 92.18 (9) | C4—C5—C7 | 125.6 (2) |
N1—Co1—O5 | 103.23 (8) | O2—C6—O1 | 125.5 (3) |
N2—Co1—O5 | 76.60 (7) | O2—C6—C1 | 118.7 (2) |
O7—Co1—O5 | 152.70 (7) | O1—C6—C1 | 115.8 (2) |
O1—Co1—O5 | 95.22 (9) | O4—C7—O3 | 125.9 (2) |
N1—Co1—O3 | 76.36 (7) | O4—C7—C5 | 119.1 (2) |
N2—Co1—O3 | 106.48 (7) | O3—C7—C5 | 115.0 (2) |
O7—Co1—O3 | 90.92 (8) | N2—C8—C9 | 120.3 (2) |
O1—Co1—O3 | 152.93 (7) | N2—C8—C13 | 113.31 (19) |
O5—Co1—O3 | 94.25 (8) | C9—C8—C13 | 126.4 (2) |
C6—O1—Co1 | 115.64 (17) | C8—C9—C10 | 118.7 (2) |
C7—O3—Co1 | 115.67 (16) | C8—C9—H9 | 120.6 |
C13—O5—Co1 | 115.76 (16) | C10—C9—H9 | 120.6 |
C14—O7—Co1 | 116.43 (16) | C11—C10—C9 | 120.1 (2) |
H9A—O9—H9B | 111 (4) | C11—C10—H10 | 120.0 |
H10A—O10—H10B | 106 (5) | C9—C10—H10 | 120.0 |
H11A—O11—H11B | 102 (4) | C10—C11—C12 | 117.9 (2) |
H12A—O12—H12B | 104 (5) | C10—C11—H11 | 121.0 |
H13A—O13—H13B | 100 (5) | C12—C11—H11 | 121.0 |
C5—N1—C1 | 121.5 (2) | N2—C12—C11 | 121.1 (2) |
C5—N1—Co1 | 119.62 (16) | N2—C12—C14 | 113.42 (19) |
C1—N1—Co1 | 118.82 (16) | C11—C12—C14 | 125.5 (2) |
C12—N2—C8 | 121.87 (19) | O6—C13—O5 | 125.3 (2) |
C12—N2—Co1 | 119.28 (15) | O6—C13—C8 | 119.3 (2) |
C8—N2—Co1 | 118.84 (15) | O5—C13—C8 | 115.3 (2) |
C15—N3—H3A | 111 (2) | O8—C14—O7 | 125.6 (2) |
C15—N3—H3B | 111 (2) | O8—C14—C12 | 119.8 (2) |
H3A—N3—H3B | 105 (3) | O7—C14—C12 | 114.6 (2) |
C15—N3—H3C | 112 (2) | C16—C15—C20 | 122.1 (2) |
H3A—N3—H3C | 107 (3) | C16—C15—N3 | 119.8 (2) |
H3B—N3—H3C | 110 (3) | C20—C15—N3 | 118.1 (2) |
C19—N4—H4A | 110 (3) | C15—C16—C17 | 118.3 (2) |
C19—N4—H4B | 109 (2) | C15—C16—H16 | 120.8 |
H4A—N4—H4B | 104 (3) | C17—C16—H16 | 120.8 |
C19—N4—H4C | 110 (2) | C18—C17—C16 | 120.9 (2) |
H4A—N4—H4C | 112 (3) | C18—C17—H17 | 119.5 |
H4B—N4—H4C | 111 (3) | C16—C17—H17 | 119.5 |
N1—C1—C2 | 120.6 (2) | C19—C18—C17 | 119.3 (2) |
N1—C1—C6 | 112.8 (2) | C19—C18—H18 | 120.4 |
C2—C1—C6 | 126.6 (2) | C17—C18—H18 | 120.4 |
C3—C2—C1 | 118.3 (2) | C18—C19—C20 | 121.4 (2) |
C3—C2—H2 | 120.9 | C18—C19—N4 | 120.3 (2) |
C1—C2—H2 | 120.9 | C20—C19—N4 | 118.3 (2) |
C2—C3—C4 | 120.4 (2) | C15—C20—C19 | 118.0 (2) |
C2—C3—H3 | 119.8 | C15—C20—H20 | 121.0 |
C4—C3—H3 | 119.8 | C19—C20—H20 | 121.0 |
N1—Co1—O1—C6 | 2.1 (2) | C3—C4—C5—C7 | −175.3 (3) |
N2—Co1—O1—C6 | −177.6 (2) | Co1—O1—C6—O2 | 173.7 (2) |
O7—Co1—O1—C6 | 106.0 (2) | Co1—O1—C6—C1 | −4.3 (3) |
O5—Co1—O1—C6 | −100.3 (2) | N1—C1—C6—O2 | −173.2 (3) |
O3—Co1—O1—C6 | 9.7 (3) | C2—C1—C6—O2 | 6.8 (4) |
N1—Co1—O3—C7 | −3.76 (19) | N1—C1—C6—O1 | 5.0 (4) |
N2—Co1—O3—C7 | 176.12 (18) | C2—C1—C6—O1 | −174.9 (3) |
O7—Co1—O3—C7 | −107.98 (19) | Co1—O3—C7—O4 | −178.5 (2) |
O1—Co1—O3—C7 | −11.4 (3) | Co1—O3—C7—C5 | 4.3 (3) |
O5—Co1—O3—C7 | 98.85 (19) | N1—C5—C7—O4 | −179.7 (3) |
N1—Co1—O5—C13 | −177.44 (18) | C4—C5—C7—O4 | −3.2 (4) |
N2—Co1—O5—C13 | −0.35 (18) | N1—C5—C7—O3 | −2.3 (3) |
O7—Co1—O5—C13 | 5.3 (3) | C4—C5—C7—O3 | 174.2 (3) |
O1—Co1—O5—C13 | −99.79 (19) | C12—N2—C8—C9 | 1.8 (3) |
O3—Co1—O5—C13 | 105.59 (19) | Co1—N2—C8—C9 | −176.81 (18) |
N1—Co1—O7—C14 | 177.36 (19) | C12—N2—C8—C13 | −176.8 (2) |
N2—Co1—O7—C14 | 0.26 (19) | Co1—N2—C8—C13 | 4.6 (3) |
O1—Co1—O7—C14 | 100.4 (2) | N2—C8—C9—C10 | −0.9 (4) |
O5—Co1—O7—C14 | −5.4 (3) | C13—C8—C9—C10 | 177.6 (2) |
O3—Co1—O7—C14 | −106.5 (2) | C8—C9—C10—C11 | −0.1 (4) |
O7—Co1—N1—C5 | 89.93 (19) | C9—C10—C11—C12 | 0.1 (4) |
O1—Co1—N1—C5 | 178.9 (2) | C8—N2—C12—C11 | −1.7 (3) |
O5—Co1—N1—C5 | −88.78 (19) | Co1—N2—C12—C11 | 176.86 (17) |
O3—Co1—N1—C5 | 2.43 (18) | C8—N2—C12—C14 | 178.6 (2) |
O7—Co1—N1—C1 | −88.0 (2) | Co1—N2—C12—C14 | −2.8 (3) |
O1—Co1—N1—C1 | 0.90 (19) | C10—C11—C12—N2 | 0.7 (4) |
O5—Co1—N1—C1 | 93.24 (19) | C10—C11—C12—C14 | −179.7 (2) |
O3—Co1—N1—C1 | −175.5 (2) | Co1—O5—C13—O6 | −174.9 (2) |
O7—Co1—N2—C12 | 1.51 (17) | Co1—O5—C13—C8 | 2.7 (3) |
O1—Co1—N2—C12 | −88.20 (18) | N2—C8—C13—O6 | 173.0 (2) |
O5—Co1—N2—C12 | 178.85 (19) | C9—C8—C13—O6 | −5.5 (4) |
O3—Co1—N2—C12 | 88.34 (18) | N2—C8—C13—O5 | −4.8 (3) |
O7—Co1—N2—C8 | −179.87 (19) | C9—C8—C13—O5 | 176.7 (2) |
O1—Co1—N2—C8 | 90.42 (18) | Co1—O7—C14—O8 | 178.4 (2) |
O5—Co1—N2—C8 | −2.53 (17) | Co1—O7—C14—C12 | −1.7 (3) |
O3—Co1—N2—C8 | −93.04 (18) | N2—C12—C14—O8 | −177.2 (2) |
C5—N1—C1—C2 | −1.2 (4) | C11—C12—C14—O8 | 3.1 (4) |
Co1—N1—C1—C2 | 176.7 (2) | N2—C12—C14—O7 | 2.9 (3) |
C5—N1—C1—C6 | 178.8 (2) | C11—C12—C14—O7 | −176.7 (2) |
Co1—N1—C1—C6 | −3.2 (3) | C20—C15—C16—C17 | −0.7 (4) |
N1—C1—C2—C3 | 1.0 (4) | N3—C15—C16—C17 | 177.5 (2) |
C6—C1—C2—C3 | −179.0 (3) | C15—C16—C17—C18 | 0.5 (4) |
C1—C2—C3—C4 | 0.1 (5) | C16—C17—C18—C19 | 0.2 (4) |
C2—C3—C4—C5 | −1.1 (5) | C17—C18—C19—C20 | −0.9 (4) |
C1—N1—C5—C4 | 0.2 (4) | C17—C18—C19—N4 | −179.3 (2) |
Co1—N1—C5—C4 | −177.8 (2) | C16—C15—C20—C19 | 0.1 (4) |
C1—N1—C5—C7 | 176.9 (2) | N3—C15—C20—C19 | −178.1 (2) |
Co1—N1—C5—C7 | −1.0 (3) | C18—C19—C20—C15 | 0.7 (4) |
C3—C4—C5—N1 | 1.0 (4) | N4—C19—C20—C15 | 179.2 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O3i | 0.93 | 2.57 | 3.311 (3) | 136 |
C18—H18···O8ii | 0.93 | 2.47 | 3.099 (3) | 125 |
O9—H9A···O3 | 0.86 (4) | 1.97 (4) | 2.789 (3) | 160 (3) |
O9—H9B···O10 | 0.76 (3) | 2.07 (3) | 2.833 (4) | 176 (4) |
O10—H10A···O6i | 0.81 (6) | 2.10 (6) | 2.913 (4) | 173 (5) |
O10—H10B···O11 | 0.80 (5) | 1.97 (5) | 2.764 (5) | 170 (5) |
O11—H11A···O8 | 0.97 (5) | 1.84 (5) | 2.746 (4) | 153 (4) |
O11—H11B···O13iii | 0.86 (5) | 2.08 (5) | 2.907 (4) | 161 (5) |
O12—H12A···O10 | 0.93 (7) | 2.03 (7) | 2.946 (5) | 171 (5) |
O12—H12B···O2iv | 0.73 (5) | 2.09 (5) | 2.786 (4) | 161 (5) |
O13—H13A···O12 | 0.86 (3) | 1.95 (3) | 2.805 (4) | 176 (5) |
O13—H13B···O5v | 0.78 (5) | 2.13 (5) | 2.873 (3) | 161 (5) |
N3—H3A···O4iii | 0.87 (4) | 1.93 (4) | 2.791 (3) | 169 (3) |
N3—H3B···O7 | 0.96 (4) | 1.78 (4) | 2.714 (3) | 163 (3) |
N3—H3C···O13iii | 0.98 (4) | 2.04 (4) | 2.890 (4) | 144 (3) |
N3—H3C···O9iii | 0.98 (4) | 2.29 (4) | 2.899 (3) | 120 (3) |
N4—H4A···O9 | 0.89 (4) | 1.97 (4) | 2.844 (3) | 168 (4) |
N4—H4B···O2iv | 0.90 (4) | 1.87 (4) | 2.752 (3) | 166 (3) |
N4—H4C···O6v | 0.88 (4) | 2.00 (4) | 2.873 (3) | 175 (3) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x−1/2, −y+3/2, z−1/2; (iii) x+1, y, z; (iv) −x+3/2, y−1/2, −z+1/2; (v) −x+1/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | (C6H10N2)[Co(C7H3NO4)2]·5H2O |
Mr | 589.38 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 7.5236 (2), 18.0200 (7), 18.7122 (6) |
β (°) | 100.883 (2) |
V (Å3) | 2491.29 (14) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.76 |
Crystal size (mm) | 0.50 × 0.15 × 0.10 |
Data collection | |
Diffractometer | Stoe IPDS2 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19874, 6702, 5366 |
Rint | 0.064 |
(sin θ/λ)max (Å−1) | 0.686 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.113, 1.21 |
No. of reflections | 6702 |
No. of parameters | 407 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.32 |
Computer programs: X-AREA (Stoe & Cie, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O3i | 0.93 | 2.57 | 3.311 (3) | 136 |
C18—H18···O8ii | 0.93 | 2.47 | 3.099 (3) | 125 |
O9—H9A···O3 | 0.86 (4) | 1.97 (4) | 2.789 (3) | 160 (3) |
O9—H9B···O10 | 0.76 (3) | 2.07 (3) | 2.833 (4) | 176 (4) |
O10—H10A···O6i | 0.81 (6) | 2.10 (6) | 2.913 (4) | 173 (5) |
O10—H10B···O11 | 0.80 (5) | 1.97 (5) | 2.764 (5) | 170 (5) |
O11—H11A···O8 | 0.97 (5) | 1.84 (5) | 2.746 (4) | 153 (4) |
O11—H11B···O13iii | 0.86 (5) | 2.08 (5) | 2.907 (4) | 161 (5) |
O12—H12A···O10 | 0.93 (7) | 2.03 (7) | 2.946 (5) | 171 (5) |
O12—H12B···O2iv | 0.73 (5) | 2.09 (5) | 2.786 (4) | 161 (5) |
O13—H13A···O12 | 0.86 (3) | 1.95 (3) | 2.805 (4) | 176 (5) |
O13—H13B···O5v | 0.78 (5) | 2.13 (5) | 2.873 (3) | 161 (5) |
N3—H3A···O4iii | 0.87 (4) | 1.93 (4) | 2.791 (3) | 169 (3) |
N3—H3B···O7 | 0.96 (4) | 1.78 (4) | 2.714 (3) | 163 (3) |
N3—H3C···O13iii | 0.98 (4) | 2.04 (4) | 2.890 (4) | 144 (3) |
N3—H3C···O9iii | 0.98 (4) | 2.29 (4) | 2.899 (3) | 120 (3) |
N4—H4A···O9 | 0.89 (4) | 1.97 (4) | 2.844 (3) | 168 (4) |
N4—H4B···O2iv | 0.90 (4) | 1.87 (4) | 2.752 (3) | 166 (3) |
N4—H4C···O6v | 0.88 (4) | 2.00 (4) | 2.873 (3) | 175 (3) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x−1/2, −y+3/2, z−1/2; (iii) x+1, y, z; (iv) −x+3/2, y−1/2, −z+1/2; (v) −x+1/2, y−1/2, −z+1/2. |
Acknowledgements
The authors are grateful to Islamic Azad University, North Branch, for financial support of this work.
References
Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc. 5, 184–227. CrossRef CAS Google Scholar
Beatty, A. M., Granger, K. E. & Simpson, A. E. (2002). Chem. Eur. J. 8, 3254–3259. CrossRef PubMed CAS Google Scholar
Dobrzycki, L. & Woźniak, K. (2008). CrystEngComm, 10, 577–589. Web of Science CSD CrossRef CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Imaz, I., Thillet, A. & Sutter, J. P. (2007). Cryst. Growth Des. 7, 1753–1761. Web of Science CSD CrossRef CAS Google Scholar
Pasdar, H., Ebdam, A., Aghabozorg, H. & Notash, B. (2011a). Acta Cryst. E67, m294. Web of Science CSD CrossRef IUCr Journals Google Scholar
Pasdar, H., Heidari, S., Aghabozorg, H. & Notash, B. (2010). Acta Cryst. E66, m1581. Web of Science CSD CrossRef IUCr Journals Google Scholar
Pasdar, H., Sadat Kashani, S., Aghabozorg, H. & Notash, B. (2011b). Acta Cryst. E67, m193–m194. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Stoe & Cie (2005). X-AREA. Stoe & Cie, Darmstadt, Germany. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Our group used pyridine-2,6-dicarboxylic acid (pydcH2) in several proton-transfer systems (Aghabozorg et al., 2008; Pasdar et al., 2010, 2011a,b). Benzene-1,3-diamine (bda) has ability to act as a proton acceptor in proton-transfer compounds. The formation of mono- (Beatty et al., 2002) and diprotonated benzene-1,3-diamine (Dobrzycki & Woźniak, 2008; Imaz et al., 2007) has been observed previously.
Herein, we report the synthesis and crystal structure of the title compound (Fig. 1). The CoII ion in the complex anion is six-coordinated by two tridentate pydc ligands in a distorted octahedral geometry. We have recently reported the synthesis and crystal structure of a nickle(II) analogue, (bdaH2)[Ni(pydc)2].5H2O (Pasdar et al., 2011b). The nickle(II) and cobalt(II) complexes are isostructural. Crystal packing of the title compound is stabilized by intermolecular N—H···O, O—H···O and weak C—H···O hydrogen bonds (Fig. 2, Table 1). There are also π–π interactions between the pyridine rings of the pydc ligands and between the pyridine ring of the pydc ligand and the benzene ring of the benzene-1,3-diammonium cation, with centroid–centroid distances of 3.4575 (15) and 3.7521 (15) Å.