organic compounds
(S)-2-Amino-2-(2-chlorophenyl)cyclohexanone
aResodyn Corporation, 130 North Main Street, Suite 600, Butte, MT 59701, USA, bDepartment of Chemistry, Emory University, Atlanta, GA 30322, USA, and cDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, KY 40536, USA
*Correspondence e-mail: pcrooks@email.uky.edu
The 12H14ClNO, was determined in order to confirm that the chiral center of the molecule has an S configuration. The cyclohexanone ring adopts a chair conformation. The 2-chlorophenyl ring is slightly twisted from the axial C—N bond, with a N—C—C—C torsion angle of −5.7 (2)°. In the crystal, an intermolecular N—H⋯O hydrogen bond links adjacent molecules into an infinite chain, which propagates in the b-axis direction.
of the title compound, CRelated literature
For background literature on the preparation and use of some anesthetics, see: Holtman et al. (2006); Heshmati et al. (2003); Kohrs & Durieux (1998). For information on the synthetic transformations used, see: Kolb et al. (1994); Parcell & Sanchez (1981); Senanayake et al. (1996); Yang & Davisson (1985).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811009950/nk2080sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811009950/nk2080Isup2.hkl
With 2-chlorophenyl-1-cyclohexene as pro-chiral starting material, the enantioselective synthesis of S-norketamine was first time accomplished via a 3-step synthesis route. In the first step the chiral quarternary C-1 atom of the ketamine parent structure was generated in utilizing an adapted Sharpless-Asymmetric Dihydroxylation method (Kolb et al., 1994). Asymmetric dihydroxylation was conducted with osmiumtetroxide modified with hydroquinine 1,4-phthalazinediyl diether ((DHQ)2PHAL) as chiral ligand in tert-butanol yielding (-)-(1S, 2S)-1-(2-chlorophenyl)cyclohexane-1,2-diol in 92% yield and with 82–85% ee after crystallization from n-heptane. In the second step (-)-(1S, 2S)-1-(2-chlorophenyl) cyclohexane-1,2-diol was subjected to the condition of the Ritter Reaction (Senanayake et al., 1996) which produced (-)-(1S, 2S)-1-amino-1(2-chlorophenyl) cyclohexane-2-ol, which was obtained with 95% ee after crystallization from n-hexane. In the third step modified Jones Oxidation (Yang et al., 1985) of (-)-(1S, 2S)-1-amino-1(2-chlorophenyl) cyclohexane-2-ol produced (S)-2-amino-2-(2-chlorophenyl)cyclohexanone ((+)-S- norketamine) which was initially obtained as a solid white crystalline material after crystallization from n-heptane (Mp. 68–69°C) which was previously described as an oil (Parcell & Sanchez, 1981). The chiral purity was ee 99% determined by chiral HPLC (Chiralpak AD—H column). The specific rotation of the free S-norketamine base was established to be [a]D +3.2° (c = 2, EtOH). Intermediates and end product were characterized by infrared, NMR and MS-spectroscopy.
All non-hydrogen atoms were refined anisotropically. The hydrogen atoms were positioned geometrically and refined as riding atoms. The
was determined from 545 Friedel pairs (Flack, 1983).Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and publCIF (Westrip, 2010).C12H14ClNO | F(000) = 472 |
Mr = 223.69 | Dx = 1.349 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 3161 reflections |
a = 7.2437 (5) Å | θ = 4.3–64.6° |
b = 7.4244 (5) Å | µ = 2.84 mm−1 |
c = 20.4794 (15) Å | T = 173 K |
V = 1101.38 (13) Å3 | Block, colourless |
Z = 4 | 0.43 × 0.15 × 0.03 mm |
Bruker SMART APEX II diffractometer | 1538 independent reflections |
Radiation source: fine-focus sealed tube | 1521 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scans | θmax = 64.7°, θmin = 4.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −7→7 |
Tmin = 0.375, Tmax = 0.920 | k = −8→8 |
3449 measured reflections | l = −24→19 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.023 | H-atom parameters constrained |
wR(F2) = 0.059 | w = 1/[σ2(Fo2) + (0.0302P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max < 0.001 |
1538 reflections | Δρmax = 0.14 e Å−3 |
136 parameters | Δρmin = −0.15 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 545 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.060 (13) |
C12H14ClNO | V = 1101.38 (13) Å3 |
Mr = 223.69 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 7.2437 (5) Å | µ = 2.84 mm−1 |
b = 7.4244 (5) Å | T = 173 K |
c = 20.4794 (15) Å | 0.43 × 0.15 × 0.03 mm |
Bruker SMART APEX II diffractometer | 1538 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1521 reflections with I > 2σ(I) |
Tmin = 0.375, Tmax = 0.920 | Rint = 0.022 |
3449 measured reflections |
R[F2 > 2σ(F2)] = 0.023 | H-atom parameters constrained |
wR(F2) = 0.059 | Δρmax = 0.14 e Å−3 |
S = 1.01 | Δρmin = −0.15 e Å−3 |
1538 reflections | Absolute structure: Flack (1983), 545 Friedel pairs |
136 parameters | Absolute structure parameter: 0.060 (13) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. There were problems during data colleciton that were only realised after refinement of the results. The data were quite weak at high angle and although data were collected out to 0.85 Angstrons, the processed data were only 89% complete; however the overall statistics and quality of the results appeared quite good. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2928 (2) | 0.4934 (2) | 0.84577 (8) | 0.0241 (3) | |
C2 | 0.4469 (2) | 0.3899 (2) | 0.88115 (7) | 0.0248 (4) | |
C3 | 0.5543 (3) | 0.4618 (2) | 0.93085 (7) | 0.0288 (4) | |
C4 | 0.6938 (3) | 0.3647 (2) | 0.96124 (9) | 0.0389 (4) | |
H4 | 0.7637 | 0.4178 | 0.9954 | 0.047* | |
C5 | 0.7303 (3) | 0.1905 (3) | 0.94148 (10) | 0.0463 (5) | |
H5 | 0.8264 | 0.1236 | 0.9617 | 0.056* | |
C6 | 0.6268 (3) | 0.1144 (2) | 0.89243 (10) | 0.0434 (5) | |
H6 | 0.6508 | −0.0055 | 0.8787 | 0.052* | |
C7 | 0.4874 (3) | 0.2131 (2) | 0.86316 (8) | 0.0336 (4) | |
H7 | 0.4166 | 0.1583 | 0.8295 | 0.040* | |
C8 | 0.1313 (2) | 0.5361 (2) | 0.89240 (8) | 0.0301 (4) | |
H8A | 0.0653 | 0.4228 | 0.9026 | 0.036* | |
H8B | 0.1822 | 0.5838 | 0.9338 | 0.036* | |
C9 | −0.0066 (2) | 0.6718 (2) | 0.86506 (9) | 0.0379 (4) | |
H9A | −0.0712 | 0.6184 | 0.8271 | 0.045* | |
H9B | −0.1001 | 0.7003 | 0.8988 | 0.045* | |
C10 | 0.0903 (3) | 0.8435 (2) | 0.84417 (9) | 0.0380 (4) | |
H10A | 0.1524 | 0.8986 | 0.8823 | 0.046* | |
H10B | −0.0018 | 0.9306 | 0.8274 | 0.046* | |
C11 | 0.2330 (3) | 0.8039 (2) | 0.79098 (8) | 0.0340 (4) | |
H11A | 0.1691 | 0.7598 | 0.7514 | 0.041* | |
H11B | 0.2986 | 0.9165 | 0.7795 | 0.041* | |
C12 | 0.3715 (2) | 0.6647 (2) | 0.81317 (7) | 0.0258 (4) | |
Cl1 | 0.52113 (6) | 0.68279 (5) | 0.958904 (19) | 0.03641 (13) | |
N1 | 0.2147 (2) | 0.39391 (19) | 0.79034 (7) | 0.0358 (3) | |
H1A | 0.3079 | 0.3550 | 0.7641 | 0.054* | |
H1B | 0.1502 | 0.2974 | 0.8055 | 0.054* | |
O1 | 0.53524 (16) | 0.67977 (16) | 0.80222 (6) | 0.0351 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0209 (9) | 0.0303 (7) | 0.0211 (8) | −0.0004 (7) | −0.0008 (7) | −0.0029 (6) |
C2 | 0.0218 (9) | 0.0330 (8) | 0.0197 (8) | −0.0022 (6) | 0.0041 (7) | 0.0037 (6) |
C3 | 0.0267 (10) | 0.0373 (8) | 0.0223 (8) | −0.0045 (7) | 0.0038 (7) | 0.0031 (6) |
C4 | 0.0300 (10) | 0.0599 (11) | 0.0267 (9) | −0.0057 (8) | −0.0052 (8) | 0.0135 (8) |
C5 | 0.0389 (11) | 0.0555 (11) | 0.0444 (11) | 0.0114 (10) | 0.0014 (9) | 0.0248 (9) |
C6 | 0.0478 (13) | 0.0346 (9) | 0.0477 (12) | 0.0070 (8) | 0.0074 (10) | 0.0117 (8) |
C7 | 0.0382 (11) | 0.0326 (7) | 0.0300 (9) | −0.0014 (8) | 0.0040 (8) | 0.0029 (6) |
C8 | 0.0232 (9) | 0.0409 (9) | 0.0262 (9) | −0.0019 (7) | 0.0036 (7) | −0.0012 (7) |
C9 | 0.0234 (9) | 0.0546 (10) | 0.0357 (9) | 0.0059 (10) | 0.0011 (7) | −0.0063 (7) |
C10 | 0.0345 (10) | 0.0427 (9) | 0.0367 (10) | 0.0112 (8) | −0.0040 (8) | −0.0027 (8) |
C11 | 0.0351 (10) | 0.0375 (8) | 0.0293 (8) | 0.0039 (8) | −0.0035 (8) | 0.0031 (7) |
C12 | 0.0279 (10) | 0.0344 (8) | 0.0150 (7) | 0.0001 (7) | −0.0020 (6) | −0.0016 (6) |
Cl1 | 0.0387 (2) | 0.0428 (2) | 0.0278 (2) | −0.00777 (19) | −0.00231 (17) | −0.00948 (14) |
N1 | 0.0314 (9) | 0.0453 (7) | 0.0307 (8) | −0.0022 (7) | −0.0032 (7) | −0.0123 (6) |
O1 | 0.0266 (7) | 0.0477 (6) | 0.0310 (6) | −0.0013 (6) | 0.0023 (5) | 0.0107 (5) |
C1—N1 | 1.468 (2) | C8—C9 | 1.525 (2) |
C1—C2 | 1.537 (2) | C8—H8A | 0.9900 |
C1—C8 | 1.543 (2) | C8—H8B | 0.9900 |
C1—C12 | 1.545 (2) | C9—C10 | 1.517 (3) |
C2—C3 | 1.388 (2) | C9—H9A | 0.9900 |
C2—C7 | 1.394 (2) | C9—H9B | 0.9900 |
C3—C4 | 1.389 (3) | C10—C11 | 1.530 (3) |
C3—Cl1 | 1.7548 (16) | C10—H10A | 0.9900 |
C4—C5 | 1.380 (3) | C10—H10B | 0.9900 |
C4—H4 | 0.9500 | C11—C12 | 1.511 (2) |
C5—C6 | 1.375 (3) | C11—H11A | 0.9900 |
C5—H5 | 0.9500 | C11—H11B | 0.9900 |
C6—C7 | 1.384 (3) | C12—O1 | 1.212 (2) |
C6—H6 | 0.9500 | N1—H1A | 0.9100 |
C7—H7 | 0.9500 | N1—H1B | 0.9100 |
N1—C1—C2 | 113.13 (13) | C9—C8—H8B | 108.8 |
N1—C1—C8 | 106.87 (14) | C1—C8—H8B | 108.8 |
C2—C1—C8 | 111.20 (13) | H8A—C8—H8B | 107.7 |
N1—C1—C12 | 102.84 (13) | C10—C9—C8 | 110.82 (15) |
C2—C1—C12 | 110.31 (13) | C10—C9—H9A | 109.5 |
C8—C1—C12 | 112.21 (13) | C8—C9—H9A | 109.5 |
C3—C2—C7 | 115.98 (16) | C10—C9—H9B | 109.5 |
C3—C2—C1 | 124.08 (15) | C8—C9—H9B | 109.5 |
C7—C2—C1 | 119.93 (15) | H9A—C9—H9B | 108.1 |
C2—C3—C4 | 122.46 (16) | C9—C10—C11 | 110.58 (15) |
C2—C3—Cl1 | 121.54 (13) | C9—C10—H10A | 109.5 |
C4—C3—Cl1 | 116.01 (14) | C11—C10—H10A | 109.5 |
C5—C4—C3 | 119.62 (18) | C9—C10—H10B | 109.5 |
C5—C4—H4 | 120.2 | C11—C10—H10B | 109.5 |
C3—C4—H4 | 120.2 | H10A—C10—H10B | 108.1 |
C6—C5—C4 | 119.67 (18) | C12—C11—C10 | 111.48 (14) |
C6—C5—H5 | 120.2 | C12—C11—H11A | 109.3 |
C4—C5—H5 | 120.2 | C10—C11—H11A | 109.3 |
C5—C6—C7 | 119.77 (18) | C12—C11—H11B | 109.3 |
C5—C6—H6 | 120.1 | C10—C11—H11B | 109.3 |
C7—C6—H6 | 120.1 | H11A—C11—H11B | 108.0 |
C6—C7—C2 | 122.49 (18) | O1—C12—C11 | 122.06 (16) |
C6—C7—H7 | 118.8 | O1—C12—C1 | 121.14 (16) |
C2—C7—H7 | 118.8 | C11—C12—C1 | 116.62 (15) |
C9—C8—C1 | 113.91 (15) | C1—N1—H1A | 109.3 |
C9—C8—H8A | 108.8 | C1—N1—H1B | 109.2 |
C1—C8—H8A | 108.8 | H1A—N1—H1B | 109.5 |
N1—C1—C2—C3 | 173.46 (15) | C1—C2—C7—C6 | 178.79 (17) |
C8—C1—C2—C3 | −66.3 (2) | N1—C1—C8—C9 | −68.43 (18) |
C12—C1—C2—C3 | 58.89 (19) | C2—C1—C8—C9 | 167.66 (14) |
N1—C1—C2—C7 | −5.7 (2) | C12—C1—C8—C9 | 43.57 (19) |
C8—C1—C2—C7 | 114.58 (16) | C1—C8—C9—C10 | −54.5 (2) |
C12—C1—C2—C7 | −120.26 (15) | C8—C9—C10—C11 | 60.3 (2) |
C7—C2—C3—C4 | −0.1 (2) | C9—C10—C11—C12 | −56.4 (2) |
C1—C2—C3—C4 | −179.30 (15) | C10—C11—C12—O1 | −137.39 (18) |
C7—C2—C3—Cl1 | 179.79 (12) | C10—C11—C12—C1 | 47.45 (19) |
C1—C2—C3—Cl1 | 0.6 (2) | N1—C1—C12—O1 | −101.44 (18) |
C2—C3—C4—C5 | 0.7 (3) | C2—C1—C12—O1 | 19.5 (2) |
Cl1—C3—C4—C5 | −179.21 (14) | C8—C1—C12—O1 | 144.07 (16) |
C3—C4—C5—C6 | −0.7 (3) | N1—C1—C12—C11 | 73.77 (17) |
C4—C5—C6—C7 | 0.2 (3) | C2—C1—C12—C11 | −165.31 (14) |
C5—C6—C7—C2 | 0.4 (3) | C8—C1—C12—C11 | −40.72 (19) |
C3—C2—C7—C6 | −0.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1i | 0.91 | 2.20 | 3.066 (2) | 160 |
Symmetry code: (i) −x+1, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C12H14ClNO |
Mr | 223.69 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 173 |
a, b, c (Å) | 7.2437 (5), 7.4244 (5), 20.4794 (15) |
V (Å3) | 1101.38 (13) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 2.84 |
Crystal size (mm) | 0.43 × 0.15 × 0.03 |
Data collection | |
Diffractometer | Bruker SMART APEX II diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.375, 0.920 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3449, 1538, 1521 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.586 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.023, 0.059, 1.01 |
No. of reflections | 1538 |
No. of parameters | 136 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.14, −0.15 |
Absolute structure | Flack (1983), 545 Friedel pairs |
Absolute structure parameter | 0.060 (13) |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008) and publCIF (Westrip, 2010).
C3—C2—C1 | 124.08 (15) | C2—C3—Cl1 | 121.54 (13) |
C7—C2—C1 | 119.93 (15) | C4—C3—Cl1 | 116.01 (14) |
N1—C1—C2—C3 | 173.46 (15) | N1—C1—C2—C7 | −5.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1i | 0.91 | 2.20 | 3.066 (2) | 160 |
Symmetry code: (i) −x+1, y−1/2, −z+3/2. |
Acknowledgements
The research was funded by the US Army Medical Research Material Command, Combat Casualty Care Research, Fort Detrick, MD contract W81XWH-06–1–0275 (NVM, MB, and KIH), and by Yaupon Therapeutics, Inc. (PAC).
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KetalarTM, the racemic mixture of R- and S-Ketamines is becoming the sedative and anesthetic of choice for emergency sedation in children and victims with unknown medical history, e.g. from traffic accidents to battlefield conditions, because it causes minimal respiratory depression in comparison to other anesthetics (Heshmati et al., 2003). S-Ketamine was found 3–4 times more potent as an anesthetic than its R-enantiomer, and twice as potent as KetalarTM with fewer side effects such as psychedelic, disorientation and anxiety (Kohrs & Durieux, 1998). S-Norketamine, the major metabolite of S-Ketamine in humans and animals, is emerging as a novel drug for treatment of neuropathic pain and for analgesia (Holtman et al., 2006). To confirm the absolute configuration of (+)-norketamine, herein we report on the X-ray crystallographic characterization of crystalline S-norketamine.
The chirality of the molecule is confirmed (Figure 1). In the structure, the cyclohexanone ring adopts a chair conformation. The 2-chlorophenyl ring is slightly twisted from the axial C—N bond, with a torsion angle of -5.7 (2)°. In the crystal, an N–H···O hydrogen bond links adjacent molecules into an infinite chain which propagates in the b-axis direction (Figure 2).