metal-organic compounds
trans-Diaquabis[4-carboxy-5-carboxylato-2-(pyridin-1-ium-4-yl)-1H-imidazol-1-ido-κ2N1,O5]cobalt(II)
aSchool of Chemistry and Environment, South China Normal University, Guangzhou 510006, People's Republic of China
*Correspondence e-mail: dh@scnu.edu.cn
In the title compound, [Co(C10H6N3O4)2(H2O)2], the CoII ion is coordinated by two O atoms of two water molecules, two imidazole nitrogen atoms and two carboxylate O atoms of the two trans-standing chelate ligands, displaying a distorted octahedral coordination geometry. A three-dimensional supramolecular framework is generated through N—H⋯O, O—H⋯N and O—H⋯O hydrogen-bonding interactions.
Related literature
For the chemistry of N-heterocyclic carboxylic acids, see: Peng et al. (2010); Liu et al. (2005). For the applications of 2-(pyridine-4-yl)-1H-4,5-imidazoledicarboxylic acid, see: Li, Liu et al. (2009); Sun et al. (2006); Li, Wu et al. (2009); Chen et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811032545/bt5574sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811032545/bt5574Isup2.hkl
A mixture of CoSO4(0.4 mmol, 0.062 g) and 2-(pyridine-4-yl)-1H-4,5-imidazoledicarboxylic acid (0.5 mmol, 0.115 g) together with water (10 ml) was sealed in a 23 ml Teflon-lined stainless steel reactor and heated at 160°C under autogenous pressure for 96 h. Then the mixture was cooled down to room temperature at a rate of 5°C/h, and brown block crystals were obtained in a yield of 39% based on Co.
H atoms bonded to C atoms were ideally positioned with C—H=0.93 Å, and displacement parameters set to 1.2 times of their carrier atoms. All H atoms attached to O and N atoms were located in difference density Fourier maps and H atoms of water were refined with the following distance restraints: O—H = 0.82 (2) Å and H—H = 1.35 (2) Å with Uiso(H) = 1.5 Ueq(O) and Uiso(H) = 1.2Ueq(N) respectively.
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Co(C10H6N3O4)2(H2O)2] | F(000) = 1140 |
Mr = 559.32 | Dx = 1.873 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1775 reflections |
a = 7.4146 (17) Å | θ = 2.5–25.5° |
b = 20.190 (5) Å | µ = 0.95 mm−1 |
c = 13.361 (3) Å | T = 296 K |
β = 97.383 (3)° | Block, brown |
V = 1983.6 (8) Å3 | 0.27 × 0.26 × 0.24 mm |
Z = 4 |
Bruker AXS SMART APEX CCD diffractometer | 1775 independent reflections |
Radiation source: fine-focus sealed tube | 1480 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
ω scans | θmax = 25.2°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −8→8 |
Tmin = 0.775, Tmax = 0.797 | k = −17→24 |
4997 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.088 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | w = 1/[σ2(Fo2) + (0.034P)2 + 5.2791P] where P = (Fo2 + 2Fc2)/3 |
1775 reflections | (Δ/σ)max = 0.021 |
181 parameters | Δρmax = 0.27 e Å−3 |
3 restraints | Δρmin = −0.43 e Å−3 |
[Co(C10H6N3O4)2(H2O)2] | V = 1983.6 (8) Å3 |
Mr = 559.32 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 7.4146 (17) Å | µ = 0.95 mm−1 |
b = 20.190 (5) Å | T = 296 K |
c = 13.361 (3) Å | 0.27 × 0.26 × 0.24 mm |
β = 97.383 (3)° |
Bruker AXS SMART APEX CCD diffractometer | 1775 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1480 reflections with I > 2σ(I) |
Tmin = 0.775, Tmax = 0.797 | Rint = 0.032 |
4997 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 3 restraints |
wR(F2) = 0.088 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.27 e Å−3 |
1775 reflections | Δρmin = −0.43 e Å−3 |
181 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.9792 (4) | 0.32925 (12) | 0.57368 (19) | 0.0187 (6) | |
C2 | 0.8527 (4) | 0.34198 (12) | 0.63981 (19) | 0.0193 (6) | |
C3 | 0.8791 (3) | 0.23737 (12) | 0.62348 (19) | 0.0178 (5) | |
C4 | 0.8456 (3) | 0.16716 (13) | 0.63859 (19) | 0.0193 (6) | |
C5 | 0.9082 (4) | 0.11718 (14) | 0.5791 (2) | 0.0257 (6) | |
H5 | 0.9695 | 0.1279 | 0.5248 | 0.031* | |
C6 | 0.8781 (4) | 0.05252 (15) | 0.6016 (2) | 0.0332 (7) | |
H6 | 0.9176 | 0.0193 | 0.5613 | 0.040* | |
C7 | 0.7298 (4) | 0.08204 (14) | 0.7376 (2) | 0.0282 (7) | |
H7 | 0.6702 | 0.0695 | 0.7918 | 0.034* | |
C8 | 0.7511 (4) | 0.14764 (13) | 0.7177 (2) | 0.0254 (6) | |
H8 | 0.7026 | 0.1795 | 0.7569 | 0.031* | |
C9 | 1.0837 (4) | 0.37354 (13) | 0.5147 (2) | 0.0234 (6) | |
C10 | 0.7965 (4) | 0.40581 (13) | 0.6804 (2) | 0.0240 (6) | |
Co1 | 1.2500 | 0.2500 | 0.5000 | 0.02030 (17) | |
N1 | 0.9989 (3) | 0.26264 (10) | 0.56502 (16) | 0.0176 (5) | |
N2 | 0.7881 (3) | 0.28357 (10) | 0.67008 (16) | 0.0203 (5) | |
N3 | 0.7934 (3) | 0.03578 (12) | 0.68026 (19) | 0.0290 (6) | |
H3 | 0.779 (4) | −0.0073 (16) | 0.697 (2) | 0.035* | |
O1 | 1.1926 (3) | 0.34767 (9) | 0.46237 (15) | 0.0295 (5) | |
O2 | 1.0579 (3) | 0.43564 (9) | 0.51720 (17) | 0.0358 (5) | |
O3 | 0.8438 (3) | 0.45907 (9) | 0.63801 (17) | 0.0376 (6) | |
O4 | 0.7109 (3) | 0.40657 (10) | 0.75400 (16) | 0.0330 (5) | |
O1W | 1.1046 (3) | 0.21633 (13) | 0.36503 (16) | 0.0390 (6) | |
H1WA | 0.990 (2) | 0.2183 (19) | 0.356 (3) | 0.058* | |
H1WB | 1.139 (4) | 0.1901 (16) | 0.326 (2) | 0.058* | |
H3A | 0.940 (5) | 0.4481 (18) | 0.574 (3) | 0.058* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0225 (14) | 0.0126 (13) | 0.0219 (14) | 0.0016 (11) | 0.0061 (11) | 0.0013 (10) |
C2 | 0.0237 (14) | 0.0142 (13) | 0.0208 (14) | 0.0007 (10) | 0.0061 (11) | 0.0008 (10) |
C3 | 0.0203 (13) | 0.0141 (13) | 0.0197 (13) | −0.0001 (10) | 0.0048 (10) | 0.0018 (10) |
C4 | 0.0196 (14) | 0.0175 (14) | 0.0207 (14) | −0.0002 (11) | 0.0019 (10) | 0.0022 (11) |
C5 | 0.0315 (15) | 0.0212 (15) | 0.0262 (15) | −0.0021 (12) | 0.0106 (12) | 0.0008 (11) |
C6 | 0.0450 (18) | 0.0211 (15) | 0.0357 (18) | −0.0007 (13) | 0.0136 (14) | −0.0048 (13) |
C7 | 0.0337 (17) | 0.0229 (15) | 0.0304 (16) | −0.0024 (12) | 0.0127 (13) | 0.0049 (12) |
C8 | 0.0307 (15) | 0.0193 (14) | 0.0285 (15) | 0.0002 (12) | 0.0124 (12) | 0.0002 (12) |
C9 | 0.0269 (15) | 0.0187 (14) | 0.0259 (15) | 0.0008 (11) | 0.0081 (12) | 0.0029 (11) |
C10 | 0.0260 (15) | 0.0192 (14) | 0.0280 (16) | 0.0015 (12) | 0.0076 (12) | −0.0032 (11) |
Co1 | 0.0246 (3) | 0.0161 (3) | 0.0218 (3) | 0.0021 (2) | 0.0090 (2) | 0.0006 (2) |
N1 | 0.0215 (11) | 0.0137 (11) | 0.0187 (11) | 0.0008 (9) | 0.0065 (9) | 0.0009 (8) |
N2 | 0.0229 (12) | 0.0159 (11) | 0.0235 (12) | 0.0006 (9) | 0.0079 (9) | 0.0007 (9) |
N3 | 0.0361 (14) | 0.0144 (12) | 0.0375 (15) | −0.0041 (11) | 0.0083 (11) | 0.0038 (11) |
O1 | 0.0361 (12) | 0.0200 (10) | 0.0365 (12) | 0.0046 (9) | 0.0201 (9) | 0.0075 (9) |
O2 | 0.0500 (14) | 0.0132 (10) | 0.0498 (14) | 0.0029 (9) | 0.0275 (11) | 0.0058 (9) |
O3 | 0.0600 (15) | 0.0148 (10) | 0.0439 (13) | 0.0026 (10) | 0.0285 (11) | −0.0002 (9) |
O4 | 0.0425 (13) | 0.0223 (11) | 0.0383 (12) | 0.0023 (9) | 0.0211 (10) | −0.0056 (9) |
O1W | 0.0258 (11) | 0.0621 (17) | 0.0296 (12) | 0.0044 (11) | 0.0056 (10) | −0.0179 (11) |
C1—N1 | 1.359 (3) | C8—H8 | 0.9300 |
C1—C2 | 1.393 (4) | C9—O1 | 1.248 (3) |
C1—C9 | 1.475 (4) | C9—O2 | 1.269 (3) |
C2—N2 | 1.354 (3) | C10—O4 | 1.237 (3) |
C2—C10 | 1.479 (4) | C10—O3 | 1.285 (3) |
C3—N2 | 1.350 (3) | Co1—O1i | 2.0659 (19) |
C3—N1 | 1.355 (3) | Co1—O1 | 2.0659 (19) |
C3—C4 | 1.458 (3) | Co1—O1Wi | 2.092 (2) |
C4—C8 | 1.398 (4) | Co1—O1W | 2.092 (2) |
C4—C5 | 1.400 (4) | Co1—N1i | 2.169 (2) |
C5—C6 | 1.365 (4) | Co1—N1 | 2.169 (2) |
C5—H5 | 0.9300 | N3—H3 | 0.91 (3) |
C6—N3 | 1.335 (4) | O2—H3A | 1.25 (4) |
C6—H6 | 0.9300 | O3—H3A | 1.20 (4) |
C7—N3 | 1.332 (4) | O1W—H1WA | 0.841 (18) |
C7—C8 | 1.364 (4) | O1W—H1WB | 0.810 (18) |
C7—H7 | 0.9300 | ||
N1—C1—C2 | 109.0 (2) | O3—C10—C2 | 117.5 (2) |
N1—C1—C9 | 119.0 (2) | O1i—Co1—O1 | 180.00 (11) |
C2—C1—C9 | 132.0 (2) | O1i—Co1—O1Wi | 91.89 (9) |
N2—C2—C1 | 108.8 (2) | O1—Co1—O1Wi | 88.11 (9) |
N2—C2—C10 | 121.5 (2) | O1i—Co1—O1W | 88.11 (9) |
C1—C2—C10 | 129.6 (2) | O1—Co1—O1W | 91.89 (9) |
N2—C3—N1 | 114.1 (2) | O1Wi—Co1—O1W | 180.0 |
N2—C3—C4 | 120.3 (2) | O1i—Co1—N1i | 79.89 (7) |
N1—C3—C4 | 125.6 (2) | O1—Co1—N1i | 100.11 (7) |
C8—C4—C5 | 117.5 (2) | O1Wi—Co1—N1i | 90.55 (8) |
C8—C4—C3 | 119.3 (2) | O1W—Co1—N1i | 89.45 (8) |
C5—C4—C3 | 123.2 (2) | O1i—Co1—N1 | 100.11 (7) |
C6—C5—C4 | 119.2 (3) | O1—Co1—N1 | 79.89 (7) |
C6—C5—H5 | 120.4 | O1Wi—Co1—N1 | 89.45 (8) |
C4—C5—H5 | 120.4 | O1W—Co1—N1 | 90.55 (8) |
N3—C6—C5 | 121.5 (3) | N1i—Co1—N1 | 180.0 |
N3—C6—H6 | 119.2 | C3—N1—C1 | 103.8 (2) |
C5—C6—H6 | 119.2 | C3—N1—Co1 | 147.82 (17) |
N3—C7—C8 | 120.7 (3) | C1—N1—Co1 | 104.92 (16) |
N3—C7—H7 | 119.7 | C3—N2—C2 | 104.3 (2) |
C8—C7—H7 | 119.7 | C7—N3—C6 | 120.8 (3) |
C7—C8—C4 | 120.2 (3) | C7—N3—H3 | 118 (2) |
C7—C8—H8 | 119.9 | C6—N3—H3 | 121 (2) |
C4—C8—H8 | 119.9 | C9—O1—Co1 | 113.00 (17) |
O1—C9—O2 | 122.6 (2) | C9—O2—H3A | 109.5 (17) |
O1—C9—C1 | 117.9 (2) | C10—O3—H3A | 112.3 (17) |
O2—C9—C1 | 119.6 (2) | Co1—O1W—H1WA | 121 (2) |
O4—C10—O3 | 122.5 (2) | Co1—O1W—H1WB | 127 (2) |
O4—C10—C2 | 120.0 (2) | H1WA—O1W—H1WB | 109 (3) |
Symmetry code: (i) −x+5/2, −y+1/2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···N2ii | 0.84 (2) | 2.05 (2) | 2.889 (3) | 176 (4) |
O1W—H1WB···O4iii | 0.81 (2) | 2.27 (2) | 3.046 (3) | 161 (4) |
N3—H3···O4iv | 0.91 (3) | 1.86 (3) | 2.754 (3) | 170 (3) |
O3—H3A···O2 | 1.20 (4) | 1.25 (4) | 2.451 (3) | 172 (3) |
Symmetry codes: (ii) −x+3/2, −y+1/2, −z+1; (iii) x+1/2, −y+1/2, z−1/2; (iv) −x+3/2, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Co(C10H6N3O4)2(H2O)2] |
Mr | 559.32 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 296 |
a, b, c (Å) | 7.4146 (17), 20.190 (5), 13.361 (3) |
β (°) | 97.383 (3) |
V (Å3) | 1983.6 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.95 |
Crystal size (mm) | 0.27 × 0.26 × 0.24 |
Data collection | |
Diffractometer | Bruker AXS SMART APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.775, 0.797 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4997, 1775, 1480 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.599 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.088, 1.01 |
No. of reflections | 1775 |
No. of parameters | 181 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.27, −0.43 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···N2i | 0.841 (18) | 2.050 (19) | 2.889 (3) | 176 (4) |
O1W—H1WB···O4ii | 0.810 (18) | 2.27 (2) | 3.046 (3) | 161 (4) |
N3—H3···O4iii | 0.91 (3) | 1.86 (3) | 2.754 (3) | 170 (3) |
O3—H3A···O2 | 1.20 (4) | 1.25 (4) | 2.451 (3) | 172 (3) |
Symmetry codes: (i) −x+3/2, −y+1/2, −z+1; (ii) x+1/2, −y+1/2, z−1/2; (iii) −x+3/2, y−1/2, −z+3/2. |
Acknowledgements
The authors acknowledge South China Normal University and the National Natural Science Foundation of China (grant No. 20871048) for supporting this work.
References
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Mixed N– and O-donor organic ligands, such as 1H-benzimidazole-5-carboxylic acid, has been investigated and proved to be a good choice to costruct novel coordination polymers (Peng et al., 2010; Liu et al., 2005). Another hybrid molecule 2-(pyridine-4-yl)-1H-4,5-imidazoledicarboxylic acid exhibits diverse coordination modes for its abundant potential donor atoms (Li, Liu et al., 2009; Sun et al., 2006; Li, Wu et al., 2009; Chen et al., 2010). In this work, we employed 2-(pyridine-4-yl)-1H-4,5-imidazoledicarboxylic acid as the building blocks to synthesize the title compound under hydrothermal condition. The centre metal ion Coii lies on an inversion centre and is coordinated by two imidazole nitrogen atoms, two O atoms of two water molecules and two carboxylate O atoms of the two trans-standing chelate ligands, displaying a distorted octahedral coordination geometry. The bond distances of Co—Ow and Co—Ocarboxylate are 2.092 (3)Å and 2.066 (3) Å, respectively. And the Co—N bond length is 2.168 (3)Å (Table 1). The dihedral angle between the pyridyl ring and the imidazole ring is about 13.98 (2)° (Table 1, Figure 1). Since there are many hydrogen bonding interactions, a three-dimensional supramolecular architecture is eventually formed via N—H···O, O—H···N and O—H···O hydrogen-bonding interactions (Table 2, Figure 2).