organic compounds
8-Phenyl-3,4,6,7,8,8a-hexahydro-1H-pyrrolo[2,1-c][1,4]oxazin-6-one
aDepartment of Structural Chemistry and Crystallography, University of Łódź, Tamka 12, PL-91403 Łódź, Poland, and bDepartment of Organic and Applied Chemistry, University of Łódź, Tamka 12, PL-91403 Łódź, Poland
*Correspondence e-mail: malecka@uni.lodz.pl
In the title compound, C13H15NO2, the hexahydropyrrolo[2,1-c][1,4]oxazine fragment is disordered over two conformations (A and B) in a 0.656 (5):0.344 (5) ratio. The five-membered ring is similarly disordered and adopts an in A, while in B this ring is nearly planar [maximum deviation = 0.088 (1) Å]. The six-membered rings in both A and B exhibit chair conformations. In the crystal, weak intermolecular C—H⋯O hydrogen bonds link the molecules into ribbons propagating in [010].
Related literature
For the synthesis, see: Leśniak et al. (2009). For bond-length data, see: Allen et al. (1987). For the biological properties of similar structures, see: Nicolaou et al. (2002). For related structures, see: Chaume et al. (2008); Dorsey et al. (2003); Harwood et al. (1997).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2000); cell X-AREA; data reduction: X-RED (Stoe & Cie, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
10.1107/S1600536811032806/cv5138sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811032806/cv5138Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811032806/cv5138Isup3.cml
General procedure. The flash vacuum thermolysis reactions were carried out in a 30x2.5 cm electrically heated horizontally oriented quartz tube packed with quartz rings, at 1.5x10-3 Torr. The synthetic precursor (E)-1-morpholin-4-yl-3-phenylprop-2-en-1-one (2 mmol) was slowly sublimed at 80–100°C from a flask held into thermolysis preheated to 950–1000°C. The product thereby obtain was collected in a CO2 acetone trap. After thermolysis, the whole system was brought to atmospheric pressure, allowing slow warming up to room temperature and the products were dissolved in CHCl3. The solvent was removed under reduced pressure and 8-phenyl-hexahydro- pyrrolo[2,1-c][1,4]oxazin-6-one was purified chromatographically on SiO2 and recrystallized from the hexane/CH2Cl2 (1:1) mixture.
The morpholin group was treated as disordered over two conformations with occupancies refined to 0.656 (5) and 0.344 (5), respectively. All H-atoms were positioned geometrically and refined with a riding model; for methine H atoms Uiso were constrained to be 1.2 times Ueq of the
and C—H=0.98 Å.Data collection: X-AREA (Stoe & Cie, 2000); cell
X-AREA (Stoe & Cie, 2000); data reduction: X-RED (Stoe & Cie, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. Molecular structure of I with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. |
C13H15NO2 | F(000) = 464 |
Mr = 217.27 | Dx = 1.322 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2762 reflections |
a = 13.2737 (12) Å | θ = 1.6–27.1° |
b = 7.1066 (4) Å | µ = 0.09 mm−1 |
c = 11.9233 (10) Å | T = 100 K |
β = 103.917 (7)° | Plate, colourless |
V = 1091.72 (15) Å3 | 0.36 × 0.21 × 0.03 mm |
Z = 4 |
Stoe IPDS 2 diffractometer | 1200 reflections with I > 2σ(I) |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | Rint = 0.108 |
Planar graphite monochromator | θmax = 26.8°, θmin = 1.6° |
Detector resolution: 6.67 pixels mm-1 | h = −16→16 |
rotation method scans | k = −8→8 |
6960 measured reflections | l = −14→15 |
2301 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.047 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.109 | w = 1/[σ2(Fo2) + (0.0509P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.81 | (Δ/σ)max < 0.001 |
2301 reflections | Δρmax = 0.21 e Å−3 |
196 parameters | Δρmin = −0.27 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.047 (4) |
C13H15NO2 | V = 1091.72 (15) Å3 |
Mr = 217.27 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.2737 (12) Å | µ = 0.09 mm−1 |
b = 7.1066 (4) Å | T = 100 K |
c = 11.9233 (10) Å | 0.36 × 0.21 × 0.03 mm |
β = 103.917 (7)° |
Stoe IPDS 2 diffractometer | 1200 reflections with I > 2σ(I) |
6960 measured reflections | Rint = 0.108 |
2301 independent reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.109 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.81 | Δρmax = 0.21 e Å−3 |
2301 reflections | Δρmin = −0.27 e Å−3 |
196 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C6A | 0.6366 (3) | 0.7343 (6) | 0.8977 (3) | 0.0425 (9) | 0.656 (5) |
H6A | 0.6341 | 0.8221 | 0.8348 | 0.051* | 0.656 (5) |
H6B | 0.5799 | 0.7624 | 0.9333 | 0.051* | 0.656 (5) |
C6B | 0.6801 (6) | 0.6628 (11) | 0.8736 (5) | 0.0464 (18) | 0.344 (5) |
H6C | 0.7183 | 0.5561 | 0.8543 | 0.056* | 0.344 (5) |
H6D | 0.6709 | 0.7541 | 0.8115 | 0.056* | 0.344 (5) |
C5A | 0.7290 (3) | 0.6480 (5) | 1.0830 (3) | 0.0409 (9) | 0.656 (5) |
H5A | 0.6657 | 0.6814 | 1.1054 | 0.049* | 0.656 (5) |
H5B | 0.7878 | 0.6762 | 1.1466 | 0.049* | 0.656 (5) |
C5B | 0.7692 (5) | 0.5623 (12) | 1.0597 (6) | 0.0437 (17) | 0.344 (5) |
H5C | 0.7980 | 0.4684 | 1.0172 | 0.052* | 0.344 (5) |
H5D | 0.8204 | 0.5922 | 1.1304 | 0.052* | 0.344 (5) |
C7A | 0.6287 (3) | 0.5338 (5) | 0.8537 (3) | 0.0410 (9) | 0.656 (5) |
H7A | 0.5612 | 0.5128 | 0.8019 | 0.049* | 0.656 (5) |
H7B | 0.6814 | 0.5110 | 0.8112 | 0.049* | 0.656 (5) |
C7B | 0.5784 (6) | 0.6015 (11) | 0.8900 (6) | 0.051 (2) | 0.344 (5) |
H7C | 0.5428 | 0.7067 | 0.9152 | 0.061* | 0.344 (5) |
H7D | 0.5356 | 0.5545 | 0.8178 | 0.061* | 0.344 (5) |
N1A | 0.6434 (2) | 0.4075 (4) | 0.9511 (2) | 0.0353 (7) | 0.656 (5) |
N1B | 0.5961 (5) | 0.4532 (9) | 0.9771 (5) | 0.0411 (15) | 0.344 (5) |
C4A | 0.7283 (3) | 0.4418 (5) | 1.0511 (2) | 0.0364 (9) | 0.656 (5) |
H4A | 0.7948 | 0.4042 | 1.0360 | 0.044* | 0.656 (5) |
C4B | 0.6714 (5) | 0.4927 (9) | 1.0858 (5) | 0.0407 (18) | 0.344 (5) |
H4B | 0.6440 | 0.5817 | 1.1339 | 0.049* | 0.344 (5) |
O1 | 0.52984 (10) | 0.1832 (2) | 0.86955 (11) | 0.0594 (5) | |
O2 | 0.73644 (10) | 0.7476 (2) | 0.98285 (11) | 0.0568 (4) | |
C36 | 0.81951 (14) | 0.3636 (3) | 1.33444 (16) | 0.0453 (5) | |
H36 | 0.7745 | 0.4576 | 1.3464 | 0.054* | |
C2 | 0.64430 (14) | 0.1486 (3) | 1.06256 (15) | 0.0448 (5) | |
H2B | 0.6954 | 0.0592 | 1.0491 | 0.054* | |
H2A | 0.5935 | 0.0820 | 1.0940 | 0.054* | |
C32 | 0.86314 (15) | 0.1182 (3) | 1.22000 (16) | 0.0459 (5) | |
H32 | 0.8476 | 0.0445 | 1.1536 | 0.055* | |
C35 | 0.91025 (14) | 0.3310 (3) | 1.41661 (16) | 0.0514 (6) | |
H35 | 0.9259 | 0.4034 | 1.4835 | 0.062* | |
C33 | 0.95397 (15) | 0.0859 (3) | 1.30222 (18) | 0.0516 (6) | |
H33 | 0.9991 | −0.0083 | 1.2908 | 0.062* | |
C34 | 0.97791 (15) | 0.1928 (3) | 1.40096 (17) | 0.0523 (6) | |
H34 | 1.0392 | 0.1719 | 1.4566 | 0.063* | |
C3 | 0.69621 (18) | 0.3034 (3) | 1.14461 (17) | 0.0513 (6) | |
C31 | 0.79475 (13) | 0.2572 (3) | 1.23386 (14) | 0.0408 (5) | |
C1 | 0.59269 (15) | 0.2476 (3) | 0.95258 (16) | 0.0505 (5) | |
H7 | 0.6478 (17) | 0.348 (4) | 1.1835 (19) | 0.074 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C6A | 0.0416 (19) | 0.041 (2) | 0.0405 (18) | 0.0053 (17) | 0.0014 (14) | 0.0030 (16) |
C6B | 0.060 (5) | 0.038 (4) | 0.039 (4) | 0.002 (4) | 0.008 (3) | −0.004 (3) |
C5A | 0.0446 (19) | 0.043 (2) | 0.0316 (16) | 0.0039 (16) | 0.0017 (14) | 0.0012 (15) |
C5B | 0.040 (4) | 0.040 (5) | 0.046 (4) | −0.001 (3) | 0.002 (3) | 0.002 (3) |
C7A | 0.0405 (18) | 0.047 (2) | 0.0323 (17) | 0.0032 (16) | 0.0021 (13) | 0.0030 (16) |
C7B | 0.052 (4) | 0.061 (5) | 0.033 (3) | 0.003 (4) | −0.004 (3) | 0.009 (3) |
N1A | 0.0368 (15) | 0.0380 (16) | 0.0278 (14) | 0.0003 (12) | 0.0012 (12) | 0.0004 (11) |
N1B | 0.041 (3) | 0.051 (4) | 0.027 (3) | −0.006 (3) | 0.000 (2) | 0.004 (2) |
C4A | 0.0326 (17) | 0.041 (2) | 0.0320 (16) | 0.0001 (15) | 0.0012 (13) | −0.0001 (14) |
C4B | 0.039 (4) | 0.046 (4) | 0.034 (3) | −0.001 (3) | 0.003 (3) | −0.003 (3) |
O1 | 0.0560 (8) | 0.0739 (11) | 0.0405 (8) | −0.0204 (8) | −0.0034 (7) | −0.0059 (7) |
O2 | 0.0596 (8) | 0.0651 (10) | 0.0396 (8) | −0.0191 (7) | 0.0001 (6) | 0.0087 (7) |
C36 | 0.0479 (10) | 0.0486 (12) | 0.0393 (11) | −0.0088 (9) | 0.0103 (8) | −0.0029 (9) |
C2 | 0.0427 (10) | 0.0501 (12) | 0.0392 (11) | −0.0101 (9) | 0.0052 (8) | −0.0007 (9) |
C32 | 0.0566 (12) | 0.0460 (13) | 0.0338 (10) | −0.0097 (9) | 0.0082 (9) | −0.0034 (9) |
C35 | 0.0500 (12) | 0.0702 (16) | 0.0325 (11) | −0.0172 (11) | 0.0070 (9) | −0.0101 (10) |
C33 | 0.0476 (11) | 0.0527 (14) | 0.0522 (13) | −0.0031 (9) | 0.0073 (10) | 0.0005 (11) |
C34 | 0.0449 (11) | 0.0690 (16) | 0.0389 (11) | −0.0107 (11) | 0.0019 (9) | 0.0050 (11) |
C3 | 0.0674 (14) | 0.0440 (13) | 0.0347 (11) | −0.0032 (10) | −0.0031 (10) | 0.0024 (10) |
C31 | 0.0493 (10) | 0.0421 (11) | 0.0287 (10) | −0.0098 (9) | 0.0050 (8) | 0.0019 (9) |
C1 | 0.0506 (11) | 0.0627 (15) | 0.0345 (11) | −0.0167 (10) | 0.0027 (9) | 0.0008 (10) |
C6A—O2 | 1.466 (3) | N1B—C4B | 1.461 (7) |
C6A—C7A | 1.513 (6) | N1B—C1 | 1.489 (7) |
C6A—H6A | 0.9700 | C4A—C3 | 1.618 (4) |
C6A—H6B | 0.9700 | C4A—H4A | 0.9800 |
C6B—O2 | 1.466 (7) | C4B—C3 | 1.516 (6) |
C6B—C7B | 1.476 (12) | C4B—H4B | 0.9800 |
C6B—H6C | 0.9700 | O1—C1 | 1.220 (2) |
C6B—H6D | 0.9700 | C36—C35 | 1.377 (2) |
C5A—O2 | 1.411 (3) | C36—C31 | 1.389 (3) |
C5A—C4A | 1.513 (5) | C36—H36 | 0.9300 |
C5A—H5A | 0.9700 | C2—C1 | 1.500 (3) |
C5A—H5B | 0.9700 | C2—C3 | 1.522 (3) |
C5B—C4B | 1.491 (10) | C2—H2B | 0.9700 |
C5B—O2 | 1.603 (7) | C2—H2A | 0.9700 |
C5B—H5C | 0.9700 | C32—C33 | 1.378 (3) |
C5B—H5D | 0.9700 | C32—C31 | 1.378 (3) |
C7A—N1A | 1.444 (4) | C32—H32 | 0.9300 |
C7A—H7A | 0.9700 | C35—C34 | 1.373 (3) |
C7A—H7B | 0.9700 | C35—H35 | 0.9300 |
C7B—N1B | 1.459 (8) | C33—C34 | 1.373 (3) |
C7B—H7C | 0.9700 | C33—H33 | 0.9300 |
C7B—H7D | 0.9700 | C34—H34 | 0.9300 |
N1A—C1 | 1.324 (3) | C3—C31 | 1.511 (3) |
N1A—C4A | 1.450 (4) | C3—H7 | 0.93 (2) |
O2—C6A—C7A | 106.0 (3) | C5B—C4B—C3 | 106.7 (6) |
O2—C6A—H6A | 110.5 | N1B—C4B—H4B | 111.9 |
C7A—C6A—H6A | 110.5 | C5B—C4B—H4B | 111.9 |
O2—C6A—H6B | 110.5 | C3—C4B—H4B | 111.9 |
C7A—C6A—H6B | 110.5 | C5A—O2—C6B | 114.9 (3) |
H6A—C6A—H6B | 108.7 | C5A—O2—C6A | 108.5 (2) |
O2—C6B—C7B | 106.9 (6) | C6B—O2—C6A | 34.4 (3) |
O2—C6B—H6C | 110.3 | C5A—O2—C5B | 33.9 (3) |
C7B—C6B—H6C | 110.3 | C6B—O2—C5B | 100.4 (4) |
O2—C6B—H6D | 110.3 | C6A—O2—C5B | 114.8 (3) |
C7B—C6B—H6D | 110.3 | C35—C36—C31 | 120.5 (2) |
H6C—C6B—H6D | 108.6 | C35—C36—H36 | 119.8 |
O2—C5A—C4A | 105.7 (3) | C31—C36—H36 | 119.7 |
O2—C5A—H5A | 110.6 | C1—C2—C3 | 105.31 (17) |
C4A—C5A—H5A | 110.6 | C1—C2—H2B | 110.7 |
O2—C5A—H5B | 110.6 | C3—C2—H2B | 110.7 |
C4A—C5A—H5B | 110.6 | C1—C2—H2A | 110.7 |
H5A—C5A—H5B | 108.7 | C3—C2—H2A | 110.7 |
C4B—C5B—O2 | 105.2 (5) | H2B—C2—H2A | 108.8 |
C4B—C5B—H5C | 110.7 | C33—C32—C31 | 121.53 (18) |
O2—C5B—H5C | 110.7 | C33—C32—H32 | 119.2 |
C4B—C5B—H5D | 110.7 | C31—C32—H32 | 119.2 |
O2—C5B—H5D | 110.7 | C34—C35—C36 | 120.81 (19) |
H5C—C5B—H5D | 108.8 | C34—C35—H35 | 119.6 |
N1A—C7A—C6A | 108.7 (3) | C36—C35—H35 | 119.6 |
N1A—C7A—H7A | 109.9 | C34—C33—C32 | 120.0 (2) |
C6A—C7A—H7A | 109.9 | C34—C33—H33 | 120.0 |
N1A—C7A—H7B | 109.9 | C32—C33—H33 | 120.0 |
C6A—C7A—H7B | 109.9 | C33—C34—C35 | 119.22 (18) |
H7A—C7A—H7B | 108.3 | C33—C34—H34 | 120.4 |
N1B—C7B—C6B | 108.1 (5) | C35—C34—H34 | 120.4 |
N1B—C7B—H7C | 110.1 | C31—C3—C4B | 125.0 (3) |
C6B—C7B—H7C | 110.1 | C31—C3—C2 | 118.49 (18) |
N1B—C7B—H7D | 110.1 | C4B—C3—C2 | 109.2 (2) |
C6B—C7B—H7D | 110.1 | C31—C3—C4A | 106.91 (19) |
H7C—C7B—H7D | 108.4 | C4B—C3—C4A | 37.5 (2) |
C1—N1A—C7A | 125.0 (2) | C2—C3—C4A | 98.62 (18) |
C1—N1A—C4A | 115.5 (2) | C31—C3—H7 | 107.8 (14) |
C7A—N1A—C4A | 119.0 (3) | C4B—C3—H7 | 80.2 (16) |
C7B—N1B—C4B | 116.9 (5) | C2—C3—H7 | 107.7 (15) |
C7B—N1B—C1 | 125.3 (5) | C4A—C3—H7 | 117.6 (16) |
C4B—N1B—C1 | 110.2 (4) | C32—C31—C36 | 117.90 (17) |
N1A—C4A—C5A | 109.0 (2) | C32—C31—C3 | 123.72 (17) |
N1A—C4A—C3 | 100.6 (2) | C36—C31—C3 | 118.36 (19) |
C5A—C4A—C3 | 113.8 (3) | O1—C1—N1A | 124.2 (2) |
N1A—C4A—H4A | 111.0 | O1—C1—N1B | 120.7 (3) |
C5A—C4A—H4A | 111.0 | N1A—C1—N1B | 33.7 (2) |
C3—C4A—H4A | 111.0 | O1—C1—C2 | 127.8 (2) |
N1B—C4B—C5B | 108.8 (5) | N1A—C1—C2 | 106.68 (17) |
N1B—C4B—C3 | 105.4 (4) | N1B—C1—C2 | 107.6 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2B···O2i | 0.97 | 2.46 | 3.329 (3) | 149 |
C7A—H7A···O1ii | 0.97 | 2.43 | 3.154 (4) | 131 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C13H15NO2 |
Mr | 217.27 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 13.2737 (12), 7.1066 (4), 11.9233 (10) |
β (°) | 103.917 (7) |
V (Å3) | 1091.72 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.36 × 0.21 × 0.03 |
Data collection | |
Diffractometer | Stoe IPDS 2 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6960, 2301, 1200 |
Rint | 0.108 |
(sin θ/λ)max (Å−1) | 0.634 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.109, 0.81 |
No. of reflections | 2301 |
No. of parameters | 196 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.27 |
Computer programs: X-AREA (Stoe & Cie, 2000), X-RED (Stoe & Cie, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2B···O2i | 0.97 | 2.46 | 3.329 (3) | 149 |
C7A—H7A···O1ii | 0.97 | 2.43 | 3.154 (4) | 131 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, y+1/2, −z+3/2. |
Acknowledgements
Financial support from University of Łódź (grant No. 505/721/R to MM) is gratefully acknowledged. The authors thank Dr Klaus Harms from Philipps University in Marburg (Germany) for collecting the data.
References
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In this paper we provide a new oxazin-6-on derivative prepared in one step synthesis in FVT (Leśniak et al., 2009). The title compound (Fig. 1) represents an important structural unit found in biologically active compounds (Nicolaou et al., 2002). The hexahydro-pyrrolo[2,1-c][1,4] oxazine fragment is disordered over two conformations - A and B, respectively - in a ratio 0.656 (5):0.344 (5). Disordered five-membered ring adopts an envelope conformation in A, while in B this ring is nearly planar. Six-membered ring in A and B exhibits a chair conformation. Bond lengths (Allen et al., 1987) and angles are normal and correspond well to those observed in related structures (Chaume et al., 2008; Dorsey et al., 2003; Harwood et al., 1997).
The packing of the molecules in the crystal lattice is stabilized via weak intermolecular C—H···O hydrogen bonds (Table 1), which link the molecules into ribbons propagated in [010].