organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

6-Benzyl 4-ethyl 2-chloro-5,6,7,8-tetra­hydro­pyrido[4,3-d]pyrimidine-4,6-di­carboxyl­ate

aMicroscale Science Institute, Weifang University, Weifang 261061, People's Republic of China
*Correspondence e-mail: huanmeiguo@163.com

(Received 5 August 2011; accepted 21 August 2011; online 27 August 2011)

In the title compound, C18H18ClN3O4, the dihedral angle between the pyrimidine ring and the N-bonded ester grouping is 56.27 (7)° and the dihedral angle between the aromatic rings is 11.23 (7)°.

Related literature

For background to the biological activities of pyrimidine compounds, see: Patil et al. (2003[Patil, L. R., Mandhare, P. N., Bondge, S. P., Munde, S. B. & Mane, R. (2003). Indian J. Heterocycl. Chem. 12, 245-248.]); Siddiqui et al. (2007[Siddiqui, A. A., Rajesh, R. Mojahid-Ul-Islam, Alagarsamy, V., Meyyanathan, S. N., Kumar, B. P. & Suresh, B. (2007). Acta Pol. Pharm. 64, 17-26.]).

[Scheme 1]

Experimental

Crystal data
  • C18H18ClN3O4

  • Mr = 375.80

  • Monoclinic, P 21 /c

  • a = 11.530 (2) Å

  • b = 12.384 (2) Å

  • c = 14.010 (3) Å

  • β = 119.820 (4)°

  • V = 1735.6 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.25 mm−1

  • T = 173 K

  • 0.23 × 0.20 × 0.16 mm

Data collection
  • MM007-HF CCD (Saturn 724+) diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2007[Rigaku (2007). CrystalClear. Rigaku Corporation, Tokyo, Japan.]) Tmin = 0.945, Tmax = 0.961

  • 8909 measured reflections

  • 3925 independent reflections

  • 3518 reflections with I > 2σ(I)

  • Rint = 0.038

Refinement
  • R[F2 > 2σ(F2)] = 0.058

  • wR(F2) = 0.142

  • S = 1.09

  • 3925 reflections

  • 236 parameters

  • H-atom parameters constrained

  • Δρmax = 0.65 e Å−3

  • Δρmin = −0.70 e Å−3

Data collection: CrystalClear (Rigaku, 2007[Rigaku (2007). CrystalClear. Rigaku Corporation, Tokyo, Japan.]); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: SHELXTL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); software used to prepare material for publication: SHELXTL.

Supporting information


Comment top

Pyrimidine is a widespread heterocyclic moiety present in numerous natural products. Pyrimidines are important not only because they are an integral part of genetic materials, but also they have important biodynamic properties and biological activities (e.g. Siddiqui et al. (2007); Patil et al. (2003).

In continuation of our interest in the synthesis of the biologically active heterocyclic compound, here we report the sigle crystal structure of the title compound, (I). In the molecule (Fig. 1), atoms N1,C1,N2,C2,C3 and C4 lie in a plane (p1), with a maximum deviation of 0.0312 (13) Å, atoms N3,C11,O3,O4, and C12 lie in a plane (p2) too, the maximum deviation is 0.0647 (13) Å. The dihedral angle between p1 and p2 is 56.27 (7)°. The dihedral angles made by the phenyl ring with p1 and p2 are 11.23 (7)° and 60.25 (8)°, respectively.

Related literature top

For background to the biological activities of pyrimidine compounds, see: Patil et al. (2003); Siddiqui et al. (2007).

Experimental top

5-tert-butyl 3-ethyl 1-isopropyl-6,7-dihydro-1H-pyrazolo[4,3-c] pyridine-3,5(4H)-dicarboxylate was synthesized with 6-benzyl 4-ethyl 2-hydroxy-7,8-dihydropyrido[4,3-d] pyrimidine-4,6(5H)- dicarboxylate (1 eq), andN,N-dimethylaniline (2 eq) in POCl3 (as solvent) in refluxing for 3 hrs. Colourless blocks of (I) were obtained by recrystallization from ethanol at room temperature.

Refinement top

All H atoms were fixed geometrically and allowed to ride on their attached atoms, with C—H distances in the range 0.95–0.98 Å, and with Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(Cmethyl).

Computing details top

Data collection: CrystalClear (Rigaku, 2007); cell refinement: CrystalClear (Rigaku, 2007); data reduction: CrystalClear (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. The molecular structure of (I) with displacement ellipsoids drawn at the 50% probability level.
6-Benzyl 4-ethyl 2-chloro-5,6,7,8-tetrahydropyrido[4,3-d]pyrimidine-4,6-dicarboxylate top
Crystal data top
C18H18ClN3O4F(000) = 784
Mr = 375.80Dx = 1.438 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6088 reflections
a = 11.530 (2) Åθ = 1.6–27.5°
b = 12.384 (2) ŵ = 0.25 mm1
c = 14.010 (3) ÅT = 173 K
β = 119.820 (4)°Block, colorless
V = 1735.6 (6) Å30.23 × 0.20 × 0.16 mm
Z = 4
Data collection top
MM007-HF CCD (Saturn 724+)
diffractometer
3925 independent reflections
Radiation source: rotating anode3518 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.038
ω scans at fixed χ = 45°θmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan
(CrystalClear; Rigaku, 2007)
h = 1412
Tmin = 0.945, Tmax = 0.961k = 1216
8909 measured reflectionsl = 1618
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.09 w = 1/[σ2(Fo2) + (0.0565P)2 + 1.1725P]
where P = (Fo2 + 2Fc2)/3
3925 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.65 e Å3
0 restraintsΔρmin = 0.70 e Å3
Crystal data top
C18H18ClN3O4V = 1735.6 (6) Å3
Mr = 375.80Z = 4
Monoclinic, P21/cMo Kα radiation
a = 11.530 (2) ŵ = 0.25 mm1
b = 12.384 (2) ÅT = 173 K
c = 14.010 (3) Å0.23 × 0.20 × 0.16 mm
β = 119.820 (4)°
Data collection top
MM007-HF CCD (Saturn 724+)
diffractometer
3925 independent reflections
Absorption correction: multi-scan
(CrystalClear; Rigaku, 2007)
3518 reflections with I > 2σ(I)
Tmin = 0.945, Tmax = 0.961Rint = 0.038
8909 measured reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0580 restraints
wR(F2) = 0.142H-atom parameters constrained
S = 1.09Δρmax = 0.65 e Å3
3925 reflectionsΔρmin = 0.70 e Å3
236 parameters
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl10.70799 (5)0.21924 (5)0.19746 (6)0.0470 (2)
O10.11289 (14)0.13056 (12)0.00647 (13)0.0367 (4)
O20.29267 (15)0.02745 (12)0.10881 (13)0.0405 (4)
O30.04486 (14)0.60281 (12)0.14053 (12)0.0329 (3)
O40.02266 (14)0.43250 (12)0.20318 (12)0.0349 (4)
N10.51941 (17)0.36384 (15)0.13641 (14)0.0320 (4)
N20.45847 (16)0.17871 (14)0.12649 (14)0.0299 (4)
N30.12864 (17)0.46466 (14)0.02346 (14)0.0316 (4)
C10.5421 (2)0.25868 (18)0.14647 (17)0.0315 (4)
C20.33018 (19)0.20875 (16)0.08209 (15)0.0256 (4)
C30.28806 (18)0.31618 (16)0.05975 (14)0.0246 (4)
C40.3906 (2)0.39277 (17)0.09374 (16)0.0280 (4)
C50.14314 (19)0.35043 (16)0.00482 (16)0.0282 (4)
H5A0.09040.30720.06270.034*
H5B0.10760.33630.05500.034*
C60.2223 (2)0.53565 (17)0.06382 (17)0.0353 (5)
H6A0.21740.52340.13150.042*
H6B0.19920.61200.04150.042*
C70.3628 (2)0.51207 (17)0.08584 (19)0.0365 (5)
H7A0.37410.54310.02580.044*
H7B0.42840.54730.15550.044*
C80.2320 (2)0.11846 (16)0.06036 (16)0.0280 (4)
C90.2049 (2)0.0631 (2)0.0968 (2)0.0466 (6)
H9A0.12190.03530.09240.056*
H9B0.25000.11040.16230.056*
C100.1705 (3)0.1273 (2)0.0041 (2)0.0520 (7)
H10A0.11850.08240.06940.078*
H10B0.11750.19050.00720.078*
H10C0.25280.15110.00190.078*
C110.04534 (18)0.49442 (17)0.12869 (16)0.0279 (4)
C120.0290 (2)0.6427 (2)0.25290 (18)0.0364 (5)
H12A0.02660.58740.30300.044*
H12B0.01570.70830.25920.044*
C130.1726 (2)0.66913 (17)0.28908 (16)0.0293 (4)
C140.2715 (2)0.59019 (18)0.32842 (17)0.0343 (5)
H140.24820.51710.33100.041*
C150.4040 (2)0.6170 (2)0.36400 (18)0.0390 (5)
H150.47070.56240.38940.047*
C160.4380 (2)0.7237 (2)0.36211 (18)0.0388 (5)
H160.52850.74260.38740.047*
C170.3409 (2)0.8033 (2)0.32367 (18)0.0370 (5)
H170.36470.87660.32280.044*
C180.2084 (2)0.77566 (18)0.28631 (17)0.0321 (4)
H180.14160.83020.25860.039*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl10.0225 (3)0.0441 (3)0.0666 (4)0.0014 (2)0.0163 (3)0.0168 (3)
O10.0234 (7)0.0309 (8)0.0474 (9)0.0025 (6)0.0112 (6)0.0032 (7)
O20.0296 (8)0.0273 (8)0.0499 (9)0.0021 (6)0.0085 (7)0.0081 (7)
O30.0283 (7)0.0276 (7)0.0328 (7)0.0048 (6)0.0077 (6)0.0067 (6)
O40.0286 (7)0.0335 (8)0.0307 (7)0.0053 (6)0.0057 (6)0.0014 (6)
N10.0244 (8)0.0322 (9)0.0354 (9)0.0054 (7)0.0118 (7)0.0068 (7)
N20.0231 (8)0.0311 (9)0.0313 (8)0.0004 (7)0.0103 (7)0.0049 (7)
N30.0283 (9)0.0249 (9)0.0290 (8)0.0018 (7)0.0047 (7)0.0018 (7)
C10.0221 (9)0.0352 (11)0.0329 (10)0.0015 (8)0.0105 (8)0.0072 (9)
C20.0228 (9)0.0274 (10)0.0226 (8)0.0002 (7)0.0083 (7)0.0005 (7)
C30.0222 (9)0.0273 (9)0.0212 (8)0.0019 (7)0.0083 (7)0.0002 (7)
C40.0266 (9)0.0289 (10)0.0249 (9)0.0033 (8)0.0100 (8)0.0025 (8)
C50.0223 (9)0.0274 (10)0.0291 (10)0.0014 (8)0.0083 (8)0.0033 (8)
C60.0347 (11)0.0264 (10)0.0312 (10)0.0027 (8)0.0061 (9)0.0025 (8)
C70.0314 (11)0.0259 (10)0.0397 (12)0.0054 (9)0.0084 (9)0.0023 (9)
C80.0268 (10)0.0259 (10)0.0278 (9)0.0012 (8)0.0110 (8)0.0004 (7)
C90.0371 (12)0.0343 (12)0.0531 (14)0.0074 (10)0.0108 (11)0.0146 (11)
C100.0436 (14)0.0340 (13)0.0746 (18)0.0014 (11)0.0264 (13)0.0056 (12)
C110.0208 (9)0.0292 (10)0.0312 (10)0.0027 (8)0.0110 (8)0.0012 (8)
C120.0275 (11)0.0420 (13)0.0359 (11)0.0062 (9)0.0130 (9)0.0148 (9)
C130.0252 (9)0.0332 (11)0.0262 (9)0.0037 (8)0.0103 (8)0.0092 (8)
C140.0298 (10)0.0340 (11)0.0331 (10)0.0035 (9)0.0110 (9)0.0066 (9)
C150.0290 (11)0.0460 (13)0.0351 (11)0.0053 (10)0.0107 (9)0.0017 (10)
C160.0256 (10)0.0527 (14)0.0339 (11)0.0078 (10)0.0116 (9)0.0047 (10)
C170.0362 (11)0.0393 (12)0.0343 (11)0.0076 (10)0.0167 (9)0.0036 (9)
C180.0292 (10)0.0344 (11)0.0294 (10)0.0010 (9)0.0120 (8)0.0053 (8)
Geometric parameters (Å, º) top
Cl1—C11.746 (2)C6—H6B0.9900
O1—C81.203 (2)C7—H7A0.9900
O2—C81.322 (2)C7—H7B0.9900
O2—C91.463 (3)C9—C101.493 (4)
O3—C111.352 (2)C9—H9A0.9900
O3—C121.454 (2)C9—H9B0.9900
O4—C111.216 (2)C10—H10A0.9800
N1—C11.322 (3)C10—H10B0.9800
N1—C41.344 (3)C10—H10C0.9800
N2—C11.312 (3)C12—C131.508 (3)
N2—C21.341 (2)C12—H12A0.9900
N3—C111.350 (2)C12—H12B0.9900
N3—C51.456 (3)C13—C181.389 (3)
N3—C61.456 (3)C13—C141.391 (3)
C2—C31.397 (3)C14—C151.392 (3)
C2—C81.510 (3)C14—H140.9500
C3—C41.402 (3)C15—C161.383 (3)
C3—C51.512 (3)C15—H150.9500
C4—C71.504 (3)C16—C171.383 (3)
C5—H5A0.9900C16—H160.9500
C5—H5B0.9900C17—C181.389 (3)
C6—C71.519 (3)C17—H170.9500
C6—H6A0.9900C18—H180.9500
C8—O2—C9115.82 (17)O2—C9—C10111.1 (2)
C11—O3—C12115.75 (17)O2—C9—H9A109.4
C1—N1—C4115.24 (17)C10—C9—H9A109.4
C1—N2—C2114.46 (18)O2—C9—H9B109.4
C11—N3—C5119.03 (17)C10—C9—H9B109.4
C11—N3—C6125.44 (18)H9A—C9—H9B108.0
C5—N3—C6114.90 (16)C9—C10—H10A109.5
N2—C1—N1129.44 (19)C9—C10—H10B109.5
N2—C1—Cl1114.57 (16)H10A—C10—H10B109.5
N1—C1—Cl1115.97 (16)C9—C10—H10C109.5
N2—C2—C3123.25 (18)H10A—C10—H10C109.5
N2—C2—C8115.55 (17)H10B—C10—H10C109.5
C3—C2—C8121.17 (17)O4—C11—N3124.76 (19)
C2—C3—C4115.31 (18)O4—C11—O3124.00 (18)
C2—C3—C5123.65 (17)N3—C11—O3111.23 (17)
C4—C3—C5121.03 (18)O3—C12—C13113.06 (17)
N1—C4—C3121.96 (19)O3—C12—H12A109.0
N1—C4—C7116.26 (18)C13—C12—H12A109.0
C3—C4—C7121.77 (18)O3—C12—H12B109.0
N3—C5—C3111.06 (16)C13—C12—H12B109.0
N3—C5—H5A109.4H12A—C12—H12B107.8
C3—C5—H5A109.4C18—C13—C14118.86 (19)
N3—C5—H5B109.4C18—C13—C12119.29 (19)
C3—C5—H5B109.4C14—C13—C12121.8 (2)
H5A—C5—H5B108.0C13—C14—C15120.8 (2)
N3—C6—C7108.99 (18)C13—C14—H14119.6
N3—C6—H6A109.9C15—C14—H14119.6
C7—C6—H6A109.9C16—C15—C14119.5 (2)
N3—C6—H6B109.9C16—C15—H15120.3
C7—C6—H6B109.9C14—C15—H15120.3
H6A—C6—H6B108.3C15—C16—C17120.4 (2)
C4—C7—C6111.75 (18)C15—C16—H16119.8
C4—C7—H7A109.3C17—C16—H16119.8
C6—C7—H7A109.3C16—C17—C18119.8 (2)
C4—C7—H7B109.3C16—C17—H17120.1
C6—C7—H7B109.3C18—C17—H17120.1
H7A—C7—H7B107.9C13—C18—C17120.7 (2)
O1—C8—O2125.15 (19)C13—C18—H18119.7
O1—C8—C2122.78 (18)C17—C18—H18119.7
O2—C8—C2112.07 (16)
C2—N2—C1—N15.3 (3)C9—O2—C8—O11.8 (3)
C2—N2—C1—Cl1176.77 (14)C9—O2—C8—C2177.02 (18)
C4—N1—C1—N24.1 (3)N2—C2—C8—O1168.70 (19)
C4—N1—C1—Cl1177.96 (14)C3—C2—C8—O113.1 (3)
C1—N2—C2—C30.7 (3)N2—C2—C8—O212.5 (2)
C1—N2—C2—C8178.82 (17)C3—C2—C8—O2165.70 (18)
N2—C2—C3—C44.1 (3)C8—O2—C9—C1089.1 (3)
C8—C2—C3—C4173.94 (17)C5—N3—C11—O41.8 (3)
N2—C2—C3—C5177.00 (18)C6—N3—C11—O4172.3 (2)
C8—C2—C3—C55.0 (3)C5—N3—C11—O3179.43 (17)
C1—N1—C4—C31.7 (3)C6—N3—C11—O39.0 (3)
C1—N1—C4—C7177.53 (19)C12—O3—C11—O48.4 (3)
C2—C3—C4—N15.3 (3)C12—O3—C11—N3172.86 (17)
C5—C3—C4—N1175.74 (18)C11—O3—C12—C1391.6 (2)
C2—C3—C4—C7173.87 (18)O3—C12—C13—C1898.8 (2)
C5—C3—C4—C75.1 (3)O3—C12—C13—C1483.2 (3)
C11—N3—C5—C3124.66 (19)C18—C13—C14—C150.3 (3)
C6—N3—C5—C346.7 (2)C12—C13—C14—C15178.33 (19)
C2—C3—C5—N3170.82 (17)C13—C14—C15—C161.3 (3)
C4—C3—C5—N310.3 (3)C14—C15—C16—C171.0 (3)
C11—N3—C6—C7104.5 (2)C15—C16—C17—C180.3 (3)
C5—N3—C6—C766.2 (2)C14—C13—C18—C171.0 (3)
N1—C4—C7—C6165.93 (18)C12—C13—C18—C17177.13 (19)
C3—C4—C7—C613.3 (3)C16—C17—C18—C131.2 (3)
N3—C6—C7—C446.0 (2)

Experimental details

Crystal data
Chemical formulaC18H18ClN3O4
Mr375.80
Crystal system, space groupMonoclinic, P21/c
Temperature (K)173
a, b, c (Å)11.530 (2), 12.384 (2), 14.010 (3)
β (°) 119.820 (4)
V3)1735.6 (6)
Z4
Radiation typeMo Kα
µ (mm1)0.25
Crystal size (mm)0.23 × 0.20 × 0.16
Data collection
DiffractometerMM007-HF CCD (Saturn 724+)
diffractometer
Absorption correctionMulti-scan
(CrystalClear; Rigaku, 2007)
Tmin, Tmax0.945, 0.961
No. of measured, independent and
observed [I > 2σ(I)] reflections
8909, 3925, 3518
Rint0.038
(sin θ/λ)max1)0.649
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.058, 0.142, 1.09
No. of reflections3925
No. of parameters236
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å3)0.65, 0.70

Computer programs: CrystalClear (Rigaku, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).

 

Acknowledgements

The author thanks Shandong Provincial Natural Science Foundation, China (Y2008B29) and Yuandu Scholar of Weifang City for support.

References

First citationPatil, L. R., Mandhare, P. N., Bondge, S. P., Munde, S. B. & Mane, R. (2003). Indian J. Heterocycl. Chem. 12, 245–248.  Google Scholar
First citationRigaku (2007). CrystalClear. Rigaku Corporation, Tokyo, Japan.  Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSiddiqui, A. A., Rajesh, R. Mojahid-Ul-Islam, Alagarsamy, V., Meyyanathan, S. N., Kumar, B. P. & Suresh, B. (2007). Acta Pol. Pharm. 64, 17–26.  CAS Google Scholar

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