metal-organic compounds
[2-((R)-{2-[(S)-1-Benzylpyrrolidin-2-ylcarbonylazanidyl]phenyl}(phenyl)methylideneamino)-4-hydroxybutanoato-κ4N,N′,N′′,O1]nickel(II) toluene disolvate
aDepartment of General and Inorganic Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 53210 Pardubice, Czech Republic, and bDepartment of Chemistry and Environmental Technology, Faculty of Technology, Tomas Bata University in Zlín, nám T. G. Masaryka 275, 762 72 Zlín, Czech Republic
*Correspondence e-mail: milan.nadvornik@upce.cz
The central Ni atom in the title compound, [Ni(C29H29N3O4)]·2C7H8, is coordinated in a distorted square-planar environment by three N atoms [Ni—N = 1.942 (3), 1.843 (3) and 1.853 (3) Å] and one O atom [1.868 (3) Å] of the tetradentate ligand. The conformation of the hydroxybutanoate side chain is controlled by an intermolecular hydrogen bond.
Related literature
For the synthesis of similar complexes and their potential use as radiotracers, see: Bourdier et al. (2011); Fasth & Långström (1990); Kožíšek et al. (2004); Langer et al. (2007); Popkov & Breza (2010); Popkov et al. (2005, 2008, 2010); Nádvorník et al. (2008).
Experimental
Crystal data
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Data collection: COLLECT (Hooft, 1998) and DENZO (Otwinowski & Minor, 1997); cell COLLECT and DENZO; data reduction: COLLECT and DENZO; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811031059/im2308sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811031059/im2308Isup2.hkl
{2-[(R)-({2-(S)-1-benzylpyrrolidine-2-carboxamido]phenyl}(phenyl)methyleneamino]-4-hydroxybutanoato-κN-4,N',N'',O} nickel(II) was chromatographically isolated as the minor diastereomer (4% yield) in the synthesis of {2-[(S)-({2-(S)-1-benzylpyrrolidine-2-carboxamido]phenyl} (phenyl)methylene)amino]-4-hydroxybutanoato-κN-4,N',N'',O} nickel(II) (Popkov et al., 2008). Crystals suitable for X-ray diffraction were prepared by crystallization from toluene-methanol (2:1) by slow evaporation at room temperature.
All hydrogen atoms were discernible in the difference
However, all hydrogen atoms were situated into idealized positions and refined riding on their parent C or O atoms, with O—H = 0.82 Å, C—H = 0.97 Å for methylene, 0.96 Å for methine, 0.93 Å for aromatic H atoms, with U(H) = 1.2Ueq(O) for the alcohol and U(H) = 1.5Ueq(C) for other H atoms, respectively.Data collection: COLLECT (Hooft, 1998) and DENZO (Otwinowski & Minor, 1997); cell
COLLECT (Hooft, 1998) and DENZO (Otwinowski & Minor, 1997); data reduction: COLLECT (Hooft, 1998) and DENZO (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Ni(C29H29N3O4)]·2C7H8 | F(000) = 1536 |
Mr = 726.53 | Dx = 1.358 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 21280 reflections |
a = 11.2660 (14) Å | θ = 1–26.5° |
b = 12.8570 (9) Å | µ = 0.60 mm−1 |
c = 24.527 (3) Å | T = 150 K |
V = 3552.7 (6) Å3 | Block, red |
Z = 4 | 0.36 × 0.23 × 0.20 mm |
Bruker–Nonius KappaCCD area-detector diffractometer | 7165 independent reflections |
Radiation source: fine-focus sealed tube | 6170 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.103 |
Detector resolution: 9.091 pixels mm-1 | θmax = 26.5°, θmin = 2.0° |
ϕ and ω scans to fill the Ewald sphere | h = −13→14 |
Absorption correction: gaussian (Coppens, 1970) | k = −15→16 |
Tmin = 0.852, Tmax = 0.924 | l = −27→30 |
21133 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.056 | H-atom parameters constrained |
wR(F2) = 0.142 | w = 1/[σ2(Fo2) + (0.0456P)2 + 5.8181P] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.001 |
7165 reflections | Δρmax = 0.41 e Å−3 |
461 parameters | Δρmin = −0.44 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 3089 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.000 (17) |
[Ni(C29H29N3O4)]·2C7H8 | V = 3552.7 (6) Å3 |
Mr = 726.53 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 11.2660 (14) Å | µ = 0.60 mm−1 |
b = 12.8570 (9) Å | T = 150 K |
c = 24.527 (3) Å | 0.36 × 0.23 × 0.20 mm |
Bruker–Nonius KappaCCD area-detector diffractometer | 7165 independent reflections |
Absorption correction: gaussian (Coppens, 1970) | 6170 reflections with I > 2σ(I) |
Tmin = 0.852, Tmax = 0.924 | Rint = 0.103 |
21133 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | H-atom parameters constrained |
wR(F2) = 0.142 | Δρmax = 0.41 e Å−3 |
S = 1.01 | Δρmin = −0.44 e Å−3 |
7165 reflections | Absolute structure: Flack (1983), 3089 Friedel pairs |
461 parameters | Absolute structure parameter: 0.000 (17) |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.41796 (4) | 0.96012 (4) | 0.967796 (19) | 0.02409 (13) | |
O4 | 0.4291 (3) | 1.1043 (2) | 0.97576 (11) | 0.0313 (6) | |
N3 | 0.5515 (3) | 0.9687 (3) | 0.92463 (12) | 0.0243 (6) | |
N1 | 0.2795 (3) | 0.9604 (3) | 1.01498 (12) | 0.0276 (7) | |
N2 | 0.4009 (3) | 0.8177 (2) | 0.95941 (13) | 0.0254 (7) | |
C12 | 0.5905 (4) | 0.9023 (3) | 0.88878 (14) | 0.0252 (8) | |
C22 | 0.4189 (4) | 0.9437 (3) | 1.09551 (14) | 0.0308 (9) | |
C5 | 0.3250 (4) | 0.7761 (3) | 0.99831 (16) | 0.0292 (9) | |
C28 | 0.7135 (3) | 1.0520 (3) | 0.97481 (17) | 0.0287 (8) | |
H28A | 0.7561 | 0.9891 | 0.9652 | 0.034* | |
H28B | 0.6782 | 1.0410 | 1.0104 | 0.034* | |
O3 | 0.5443 (3) | 1.2393 (2) | 0.95379 (13) | 0.0366 (7) | |
O1 | 0.3252 (3) | 0.6883 (2) | 1.01642 (12) | 0.0355 (7) | |
C20 | 0.5239 (4) | 1.1452 (3) | 0.95497 (16) | 0.0297 (9) | |
C4 | 0.2299 (4) | 0.8524 (3) | 1.01382 (16) | 0.0285 (9) | |
H4 | 0.1964 | 0.8344 | 1.0495 | 0.034* | |
C9 | 0.5605 (4) | 0.6291 (4) | 0.83845 (17) | 0.0336 (10) | |
H9 | 0.5933 | 0.5884 | 0.8110 | 0.040* | |
C19 | 0.6139 (3) | 1.0688 (3) | 0.93337 (16) | 0.0250 (8) | |
H19 | 0.6468 | 1.0939 | 0.8988 | 0.030* | |
C23 | 0.5277 (4) | 0.9944 (4) | 1.09517 (18) | 0.0384 (11) | |
H23 | 0.5328 | 1.0594 | 1.0787 | 0.046* | |
C21 | 0.3124 (4) | 0.9958 (3) | 1.07169 (16) | 0.0330 (10) | |
H21A | 0.2453 | 0.9836 | 1.0956 | 0.040* | |
H21B | 0.3268 | 1.0702 | 1.0709 | 0.040* | |
C11 | 0.5450 (4) | 0.7964 (3) | 0.88514 (15) | 0.0255 (8) | |
C6 | 0.4583 (3) | 0.7542 (3) | 0.92145 (15) | 0.0250 (8) | |
C8 | 0.4775 (4) | 0.5876 (3) | 0.87468 (18) | 0.0349 (10) | |
H8 | 0.4549 | 0.5183 | 0.8715 | 0.042* | |
C13 | 0.6839 (4) | 0.9361 (3) | 0.84898 (16) | 0.0278 (9) | |
O2 | 0.8883 (3) | 1.1086 (3) | 1.01775 (18) | 0.0631 (12) | |
H2 | 0.9414 | 1.1522 | 1.0182 | 0.076* | |
C7 | 0.4286 (4) | 0.6479 (3) | 0.91515 (17) | 0.0323 (9) | |
H7 | 0.3744 | 0.6182 | 0.9391 | 0.039* | |
C18 | 0.8040 (4) | 0.9271 (4) | 0.85954 (17) | 0.0359 (10) | |
H18 | 0.8300 | 0.8955 | 0.8915 | 0.043* | |
C3 | 0.1311 (4) | 0.8533 (4) | 0.97001 (19) | 0.0373 (10) | |
H3A | 0.0555 | 0.8329 | 0.9856 | 0.045* | |
H3B | 0.1502 | 0.8061 | 0.9404 | 0.045* | |
C27 | 0.4135 (5) | 0.8469 (4) | 1.12086 (16) | 0.0364 (10) | |
H27 | 0.3416 | 0.8114 | 1.1218 | 0.044* | |
C10 | 0.5920 (4) | 0.7317 (3) | 0.84435 (15) | 0.0304 (8) | |
H10 | 0.6476 | 0.7593 | 0.8204 | 0.037* | |
C2 | 0.1265 (5) | 0.9646 (5) | 0.94919 (19) | 0.0473 (12) | |
H2A | 0.0451 | 0.9855 | 0.9423 | 0.057* | |
H2B | 0.1718 | 0.9723 | 0.9158 | 0.057* | |
C14 | 0.6456 (4) | 0.9796 (4) | 0.79975 (16) | 0.0384 (11) | |
H14 | 0.5648 | 0.9843 | 0.7923 | 0.046* | |
C25 | 0.6204 (4) | 0.8544 (4) | 1.14307 (18) | 0.0402 (11) | |
H25 | 0.6874 | 0.8240 | 1.1584 | 0.048* | |
C1 | 0.1801 (4) | 1.0286 (4) | 0.99426 (18) | 0.0382 (10) | |
H1A | 0.2103 | 1.0943 | 0.9806 | 0.046* | |
H1B | 0.1225 | 1.0421 | 1.0228 | 0.046* | |
C15 | 0.7278 (5) | 1.0161 (4) | 0.7621 (2) | 0.0490 (13) | |
H15 | 0.7022 | 1.0449 | 0.7294 | 0.059* | |
C26 | 0.5126 (5) | 0.8026 (4) | 1.14463 (19) | 0.0405 (11) | |
H26 | 0.5067 | 0.7381 | 1.1616 | 0.049* | |
C17 | 0.8863 (4) | 0.9650 (4) | 0.82149 (18) | 0.0422 (11) | |
H17 | 0.9672 | 0.9609 | 0.8288 | 0.051* | |
C32 | 0.8207 (5) | 0.5005 (5) | 0.7516 (2) | 0.0555 (14) | |
H32 | 0.8700 | 0.5559 | 0.7608 | 0.067* | |
C31 | 0.7956 (7) | 0.4249 (5) | 0.7887 (2) | 0.0687 (18) | |
H31 | 0.8328 | 0.4267 | 0.8226 | 0.082* | |
C16 | 0.8479 (5) | 1.0092 (4) | 0.7733 (2) | 0.0502 (14) | |
H16 | 0.9027 | 1.0348 | 0.7483 | 0.060* | |
C24 | 0.6281 (5) | 0.9516 (5) | 1.11859 (19) | 0.0475 (12) | |
H24 | 0.6996 | 0.9876 | 1.1179 | 0.057* | |
C29 | 0.7998 (5) | 1.1393 (4) | 0.9789 (2) | 0.0536 (15) | |
H29A | 0.7602 | 1.2023 | 0.9908 | 0.064* | |
H29B | 0.8361 | 1.1523 | 0.9437 | 0.064* | |
C30 | 0.7161 (6) | 0.3442 (5) | 0.7772 (2) | 0.0616 (16) | |
C35 | 0.6702 (6) | 0.3399 (5) | 0.7253 (3) | 0.0666 (17) | |
H35 | 0.6196 | 0.2857 | 0.7158 | 0.080* | |
C33 | 0.7705 (6) | 0.4941 (5) | 0.6997 (2) | 0.0623 (16) | |
H33 | 0.7887 | 0.5437 | 0.6734 | 0.075* | |
C34 | 0.6963 (6) | 0.4156 (6) | 0.6886 (3) | 0.0674 (18) | |
H34 | 0.6629 | 0.4119 | 0.6539 | 0.081* | |
C42 | 0.7867 (9) | 0.7455 (5) | 0.6131 (3) | 0.078 (2) | |
H42 | 0.7321 | 0.7470 | 0.5847 | 0.094* | |
C38 | 0.8331 (8) | 0.7707 (5) | 0.7070 (3) | 0.076 (2) | |
H38 | 0.8089 | 0.7879 | 0.7420 | 0.092* | |
C39 | 0.9515 (8) | 0.7540 (6) | 0.6966 (3) | 0.081 (2) | |
H39 | 1.0061 | 0.7560 | 0.7250 | 0.097* | |
C41 | 0.9073 (9) | 0.7280 (5) | 0.6024 (3) | 0.082 (2) | |
H41 | 0.9318 | 0.7110 | 0.5674 | 0.098* | |
C37 | 0.7498 (8) | 0.7643 (5) | 0.6665 (3) | 0.074 (2) | |
C40 | 0.9906 (8) | 0.7345 (6) | 0.6443 (3) | 0.084 (2) | |
H40 | 1.0710 | 0.7251 | 0.6373 | 0.101* | |
C36 | 0.6855 (11) | 0.2664 (8) | 0.8205 (3) | 0.120 (4) | |
H36A | 0.7492 | 0.2173 | 0.8240 | 0.144* | |
H36B | 0.6744 | 0.3020 | 0.8545 | 0.144* | |
H36C | 0.6138 | 0.2303 | 0.8110 | 0.144* | |
C43 | 0.6229 (9) | 0.7779 (9) | 0.6775 (4) | 0.113 (3) | |
H43A | 0.6125 | 0.8359 | 0.7017 | 0.136* | |
H43B | 0.5812 | 0.7909 | 0.6441 | 0.136* | |
H43C | 0.5920 | 0.7162 | 0.6943 | 0.136* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0244 (2) | 0.0219 (2) | 0.0260 (2) | −0.0005 (2) | 0.0026 (2) | −0.0001 (2) |
O4 | 0.0314 (15) | 0.0260 (13) | 0.0366 (15) | −0.0005 (13) | 0.0081 (14) | −0.0015 (12) |
N3 | 0.0293 (17) | 0.0172 (14) | 0.0264 (14) | 0.0012 (14) | −0.0020 (12) | −0.0002 (13) |
N1 | 0.0286 (16) | 0.0262 (16) | 0.0278 (15) | 0.0026 (16) | −0.0002 (12) | −0.0028 (15) |
N2 | 0.0241 (17) | 0.0251 (16) | 0.0269 (16) | −0.0012 (14) | 0.0002 (14) | 0.0004 (13) |
C12 | 0.0227 (18) | 0.0280 (19) | 0.0249 (17) | 0.0030 (17) | −0.0036 (16) | 0.0019 (15) |
C22 | 0.033 (2) | 0.036 (2) | 0.0242 (17) | 0.000 (2) | 0.0026 (17) | −0.0118 (16) |
C5 | 0.029 (2) | 0.034 (2) | 0.0252 (19) | −0.0097 (19) | 0.0021 (16) | −0.0007 (17) |
C28 | 0.0259 (18) | 0.0228 (19) | 0.037 (2) | −0.0020 (16) | 0.0009 (16) | −0.0007 (18) |
O3 | 0.0333 (15) | 0.0251 (14) | 0.0513 (18) | −0.0014 (13) | 0.0081 (13) | 0.0002 (13) |
O1 | 0.0424 (17) | 0.0281 (15) | 0.0361 (16) | −0.0066 (14) | 0.0027 (13) | 0.0037 (12) |
C20 | 0.028 (2) | 0.028 (2) | 0.033 (2) | 0.0009 (17) | 0.0005 (16) | 0.0019 (17) |
C4 | 0.0244 (19) | 0.032 (2) | 0.0289 (19) | −0.0059 (18) | 0.0058 (16) | 0.0022 (17) |
C9 | 0.030 (2) | 0.036 (2) | 0.034 (2) | 0.0021 (19) | −0.0030 (17) | −0.0102 (18) |
C19 | 0.027 (2) | 0.0195 (18) | 0.0288 (18) | −0.0062 (15) | 0.0059 (15) | 0.0010 (14) |
C23 | 0.042 (3) | 0.043 (3) | 0.031 (2) | −0.006 (2) | 0.0013 (19) | −0.0049 (19) |
C21 | 0.034 (2) | 0.034 (2) | 0.030 (2) | −0.0008 (19) | 0.0052 (18) | −0.0081 (17) |
C11 | 0.0265 (19) | 0.0271 (19) | 0.0227 (17) | −0.0013 (16) | −0.0039 (15) | 0.0017 (15) |
C6 | 0.0222 (17) | 0.0238 (19) | 0.0289 (19) | −0.0008 (16) | −0.0035 (15) | −0.0009 (16) |
C8 | 0.034 (2) | 0.030 (2) | 0.041 (2) | −0.0021 (19) | −0.0030 (19) | −0.0095 (19) |
C13 | 0.032 (2) | 0.0209 (19) | 0.0301 (19) | −0.0032 (17) | 0.0037 (17) | −0.0023 (15) |
O2 | 0.051 (2) | 0.0374 (18) | 0.101 (3) | −0.0065 (17) | −0.039 (2) | −0.0001 (19) |
C7 | 0.033 (2) | 0.028 (2) | 0.036 (2) | −0.0074 (19) | −0.0013 (19) | −0.0014 (16) |
C18 | 0.034 (2) | 0.045 (3) | 0.029 (2) | −0.001 (2) | 0.0042 (18) | 0.0009 (18) |
C3 | 0.0254 (19) | 0.051 (3) | 0.035 (2) | −0.0065 (19) | 0.000 (2) | −0.003 (2) |
C27 | 0.037 (2) | 0.040 (2) | 0.032 (2) | −0.001 (2) | 0.000 (2) | −0.0053 (18) |
C10 | 0.028 (2) | 0.034 (2) | 0.0292 (19) | −0.001 (2) | −0.0037 (17) | −0.0026 (16) |
C2 | 0.042 (3) | 0.059 (3) | 0.041 (2) | 0.007 (3) | −0.006 (2) | 0.004 (3) |
C14 | 0.038 (2) | 0.050 (3) | 0.027 (2) | 0.003 (2) | 0.0023 (18) | 0.003 (2) |
C25 | 0.042 (3) | 0.047 (3) | 0.031 (2) | 0.006 (2) | −0.0071 (19) | −0.008 (2) |
C1 | 0.032 (2) | 0.037 (2) | 0.045 (2) | 0.005 (2) | 0.0045 (19) | −0.004 (2) |
C15 | 0.051 (3) | 0.060 (3) | 0.036 (2) | 0.001 (3) | 0.007 (2) | 0.015 (2) |
C26 | 0.051 (3) | 0.039 (3) | 0.031 (2) | 0.004 (2) | −0.001 (2) | −0.001 (2) |
C17 | 0.033 (2) | 0.049 (3) | 0.046 (2) | −0.004 (2) | 0.0067 (18) | 0.003 (2) |
C32 | 0.048 (3) | 0.062 (4) | 0.057 (3) | −0.008 (3) | 0.002 (3) | −0.013 (3) |
C31 | 0.093 (5) | 0.068 (4) | 0.045 (3) | 0.007 (4) | −0.010 (3) | −0.013 (3) |
C16 | 0.053 (3) | 0.058 (3) | 0.040 (3) | −0.009 (3) | 0.014 (2) | 0.010 (2) |
C24 | 0.046 (3) | 0.058 (3) | 0.039 (2) | −0.011 (3) | 0.001 (2) | −0.015 (2) |
C29 | 0.044 (3) | 0.041 (3) | 0.076 (4) | −0.014 (2) | −0.031 (3) | 0.014 (3) |
C30 | 0.075 (4) | 0.052 (3) | 0.059 (3) | −0.004 (3) | 0.007 (3) | −0.002 (3) |
C35 | 0.065 (4) | 0.065 (4) | 0.070 (4) | −0.019 (3) | −0.010 (3) | −0.001 (3) |
C33 | 0.066 (4) | 0.066 (4) | 0.054 (3) | −0.013 (3) | 0.004 (3) | −0.001 (3) |
C34 | 0.057 (4) | 0.091 (5) | 0.054 (3) | −0.016 (3) | −0.014 (3) | 0.004 (3) |
C42 | 0.119 (7) | 0.060 (4) | 0.056 (4) | 0.000 (4) | −0.008 (4) | −0.002 (3) |
C38 | 0.113 (6) | 0.057 (4) | 0.059 (4) | −0.008 (4) | −0.002 (4) | −0.003 (3) |
C39 | 0.107 (6) | 0.081 (5) | 0.056 (4) | −0.009 (5) | −0.010 (4) | −0.002 (4) |
C41 | 0.135 (7) | 0.054 (4) | 0.057 (4) | −0.020 (5) | 0.003 (5) | −0.006 (3) |
C37 | 0.110 (6) | 0.053 (4) | 0.059 (4) | 0.001 (4) | −0.011 (4) | −0.003 (3) |
C40 | 0.116 (7) | 0.072 (5) | 0.064 (4) | −0.018 (5) | 0.005 (4) | −0.003 (4) |
C36 | 0.179 (11) | 0.097 (7) | 0.084 (6) | −0.008 (7) | 0.013 (6) | 0.030 (5) |
C43 | 0.126 (9) | 0.130 (9) | 0.083 (5) | 0.025 (7) | −0.017 (5) | −0.018 (5) |
Ni1—N3 | 1.843 (3) | C27—H27 | 0.9299 |
Ni1—N2 | 1.853 (3) | C10—H10 | 0.9299 |
Ni1—O4 | 1.868 (3) | C2—C1 | 1.504 (7) |
Ni1—N1 | 1.942 (3) | C2—H2A | 0.9699 |
O4—C20 | 1.294 (5) | C2—H2B | 0.9700 |
N3—C12 | 1.302 (5) | C14—C15 | 1.390 (7) |
N3—C19 | 1.482 (5) | C14—H14 | 0.9300 |
N1—C4 | 1.498 (5) | C25—C26 | 1.385 (7) |
N1—C1 | 1.510 (5) | C25—C24 | 1.388 (8) |
N1—C21 | 1.510 (5) | C25—H25 | 0.9301 |
N2—C5 | 1.388 (5) | C1—H1A | 0.9700 |
N2—C6 | 1.396 (5) | C1—H1B | 0.9700 |
C12—C11 | 1.458 (6) | C15—C16 | 1.383 (8) |
C12—C13 | 1.500 (5) | C15—H15 | 0.9300 |
C22—C23 | 1.389 (6) | C26—H26 | 0.9301 |
C22—C27 | 1.392 (6) | C17—C16 | 1.381 (7) |
C22—C21 | 1.493 (6) | C17—H17 | 0.9300 |
C5—O1 | 1.213 (5) | C32—C31 | 1.361 (9) |
C5—C4 | 1.502 (6) | C32—C33 | 1.395 (8) |
C28—C29 | 1.487 (6) | C32—H32 | 0.9300 |
C28—C19 | 1.530 (5) | C31—C30 | 1.400 (9) |
C28—H28A | 0.9699 | C31—H31 | 0.9301 |
C28—H28B | 0.9699 | C16—H16 | 0.9301 |
O3—C20 | 1.232 (5) | C24—H24 | 0.9300 |
C20—C19 | 1.508 (6) | C29—H29A | 0.9701 |
C4—C3 | 1.547 (6) | C29—H29B | 0.9700 |
C4—H4 | 0.9798 | C30—C35 | 1.374 (9) |
C9—C10 | 1.374 (6) | C30—C36 | 1.500 (9) |
C9—C8 | 1.395 (6) | C35—C34 | 1.359 (9) |
C9—H9 | 0.9300 | C35—H35 | 0.9300 |
C19—H19 | 0.9800 | C33—C34 | 1.338 (9) |
C23—C24 | 1.383 (7) | C33—H33 | 0.9301 |
C23—H23 | 0.9300 | C34—H34 | 0.9299 |
C21—H21A | 0.9699 | C42—C41 | 1.402 (12) |
C21—H21B | 0.9700 | C42—C37 | 1.393 (10) |
C11—C10 | 1.405 (6) | C42—H42 | 0.9301 |
C11—C6 | 1.429 (5) | C38—C37 | 1.369 (10) |
C6—C7 | 1.415 (5) | C38—C39 | 1.375 (11) |
C8—C7 | 1.375 (6) | C38—H38 | 0.9300 |
C8—H8 | 0.9299 | C39—C40 | 1.378 (10) |
C13—C18 | 1.382 (6) | C39—H39 | 0.9300 |
C13—C14 | 1.399 (6) | C41—C40 | 1.394 (11) |
O2—C29 | 1.434 (6) | C41—H41 | 0.9300 |
O2—H2 | 0.8199 | C37—C43 | 1.466 (12) |
C7—H7 | 0.9299 | C40—H40 | 0.9300 |
C18—C17 | 1.403 (6) | C36—H36A | 0.9601 |
C18—H18 | 0.9300 | C36—H36B | 0.9601 |
C3—C2 | 1.521 (7) | C36—H36C | 0.9600 |
C3—H3A | 0.9700 | C43—H43A | 0.9599 |
C3—H3B | 0.9701 | C43—H43B | 0.9601 |
C27—C26 | 1.383 (7) | C43—H43C | 0.9599 |
N3—Ni1—N2 | 94.59 (14) | C9—C10—H10 | 118.3 |
N3—Ni1—O4 | 86.88 (14) | C11—C10—H10 | 118.6 |
N2—Ni1—O4 | 177.89 (15) | C1—C2—C3 | 104.7 (4) |
N3—Ni1—N1 | 176.16 (15) | C1—C2—H2A | 110.8 |
N2—Ni1—N1 | 89.15 (14) | C3—C2—H2A | 110.6 |
O4—Ni1—N1 | 89.41 (14) | C1—C2—H2B | 110.7 |
C20—O4—Ni1 | 114.7 (3) | C3—C2—H2B | 111.2 |
C12—N3—C19 | 120.5 (3) | H2A—C2—H2B | 108.8 |
C12—N3—Ni1 | 128.6 (3) | C15—C14—C13 | 120.2 (5) |
C19—N3—Ni1 | 110.8 (2) | C15—C14—H14 | 120.0 |
C4—N1—C1 | 104.7 (3) | C13—C14—H14 | 119.9 |
C4—N1—C21 | 112.9 (3) | C26—C25—C24 | 120.0 (5) |
C1—N1—C21 | 108.5 (3) | C26—C25—H25 | 119.8 |
C4—N1—Ni1 | 106.6 (2) | C24—C25—H25 | 120.2 |
C1—N1—Ni1 | 113.4 (2) | C2—C1—N1 | 103.2 (4) |
C21—N1—Ni1 | 110.7 (3) | C2—C1—H1A | 111.3 |
C5—N2—C6 | 121.2 (3) | N1—C1—H1A | 111.1 |
C5—N2—Ni1 | 111.6 (3) | C2—C1—H1B | 111.1 |
C6—N2—Ni1 | 127.1 (3) | N1—C1—H1B | 110.9 |
N3—C12—C11 | 122.4 (4) | H1A—C1—H1B | 109.1 |
N3—C12—C13 | 119.1 (3) | C16—C15—C14 | 119.9 (5) |
C11—C12—C13 | 118.5 (3) | C16—C15—H15 | 120.1 |
C23—C22—C27 | 117.4 (4) | C14—C15—H15 | 120.0 |
C23—C22—C21 | 119.7 (4) | C27—C26—C25 | 119.9 (5) |
C27—C22—C21 | 122.7 (4) | C27—C26—H26 | 119.9 |
O1—C5—N2 | 127.5 (4) | C25—C26—H26 | 120.3 |
O1—C5—C4 | 121.1 (4) | C16—C17—C18 | 120.3 (5) |
N2—C5—C4 | 111.2 (3) | C16—C17—H17 | 119.7 |
C29—C28—C19 | 114.7 (3) | C18—C17—H17 | 120.0 |
C29—C28—H28A | 108.8 | C31—C32—C33 | 118.9 (6) |
C19—C28—H28A | 108.6 | C31—C32—H32 | 120.6 |
C29—C28—H28B | 108.5 | C33—C32—H32 | 120.5 |
C19—C28—H28B | 108.5 | C32—C31—C30 | 121.8 (6) |
H28A—C28—H28B | 107.5 | C32—C31—H31 | 119.1 |
O3—C20—O4 | 124.2 (4) | C30—C31—H31 | 119.1 |
O3—C20—C19 | 120.4 (4) | C15—C16—C17 | 120.2 (5) |
O4—C20—C19 | 115.4 (3) | C15—C16—H16 | 119.7 |
N1—C4—C5 | 110.1 (3) | C17—C16—H16 | 120.0 |
N1—C4—C3 | 106.0 (3) | C23—C24—C25 | 119.2 (5) |
C5—C4—C3 | 110.0 (3) | C23—C24—H24 | 120.2 |
N1—C4—H4 | 110.2 | C25—C24—H24 | 120.7 |
C5—C4—H4 | 110.3 | O2—C29—C28 | 107.0 (4) |
C3—C4—H4 | 110.1 | O2—C29—H29A | 110.5 |
C10—C9—C8 | 118.2 (4) | C28—C29—H29A | 110.5 |
C10—C9—H9 | 120.9 | O2—C29—H29B | 110.2 |
C8—C9—H9 | 120.8 | C28—C29—H29B | 110.2 |
N3—C19—C20 | 107.3 (3) | H29A—C29—H29B | 108.5 |
N3—C19—C28 | 108.8 (3) | C35—C30—C31 | 117.3 (6) |
C20—C19—C28 | 110.6 (3) | C35—C30—C36 | 122.8 (7) |
N3—C19—H19 | 109.9 | C31—C30—C36 | 119.8 (7) |
C20—C19—H19 | 110.1 | C34—C35—C30 | 120.2 (6) |
C28—C19—H19 | 110.1 | C34—C35—H35 | 120.2 |
C24—C23—C22 | 122.2 (5) | C30—C35—H35 | 119.6 |
C24—C23—H23 | 119.2 | C34—C33—C32 | 119.0 (6) |
C22—C23—H23 | 118.6 | C34—C33—H33 | 120.8 |
C22—C21—N1 | 115.0 (3) | C32—C33—H33 | 120.2 |
C22—C21—H21A | 108.4 | C33—C34—C35 | 122.6 (6) |
N1—C21—H21A | 108.6 | C33—C34—H34 | 118.6 |
C22—C21—H21B | 108.4 | C35—C34—H34 | 118.7 |
N1—C21—H21B | 108.7 | C41—C42—C37 | 119.5 (7) |
H21A—C21—H21B | 107.5 | C41—C42—H42 | 120.2 |
C10—C11—C6 | 118.5 (4) | C37—C42—H42 | 120.2 |
C10—C11—C12 | 117.6 (4) | C37—C38—C39 | 121.5 (7) |
C6—C11—C12 | 123.8 (4) | C37—C38—H38 | 119.0 |
N2—C6—C7 | 121.9 (4) | C39—C38—H38 | 119.6 |
N2—C6—C11 | 120.7 (3) | C38—C39—C40 | 120.6 (8) |
C7—C6—C11 | 117.4 (4) | C38—C39—H39 | 119.9 |
C7—C8—C9 | 120.9 (4) | C40—C39—H39 | 119.5 |
C7—C8—H8 | 119.4 | C42—C41—C40 | 120.3 (7) |
C9—C8—H8 | 119.7 | C42—C41—H41 | 120.0 |
C18—C13—C14 | 119.8 (4) | C40—C41—H41 | 119.7 |
C18—C13—C12 | 122.7 (4) | C38—C37—C42 | 119.1 (8) |
C14—C13—C12 | 117.4 (4) | C38—C37—C43 | 121.8 (7) |
C29—O2—H2 | 109.1 | C42—C37—C43 | 119.0 (8) |
C8—C7—C6 | 121.9 (4) | C39—C40—C41 | 118.8 (9) |
C8—C7—H7 | 119.2 | C39—C40—H40 | 120.4 |
C6—C7—H7 | 118.9 | C41—C40—H40 | 120.8 |
C13—C18—C17 | 119.5 (4) | C30—C36—H36A | 109.3 |
C13—C18—H18 | 120.2 | C30—C36—H36B | 109.2 |
C17—C18—H18 | 120.3 | H36A—C36—H36B | 109.5 |
C2—C3—C4 | 105.4 (4) | C30—C36—H36C | 110.0 |
C2—C3—H3A | 110.9 | H36A—C36—H36C | 109.5 |
C4—C3—H3A | 110.9 | H36B—C36—H36C | 109.4 |
C2—C3—H3B | 110.2 | C37—C43—H43A | 109.0 |
C4—C3—H3B | 110.8 | C37—C43—H43B | 109.9 |
H3A—C3—H3B | 108.7 | H43A—C43—H43B | 109.5 |
C26—C27—C22 | 121.4 (5) | C37—C43—H43C | 109.5 |
C26—C27—H27 | 119.4 | H43A—C43—H43C | 109.5 |
C22—C27—H27 | 119.2 | H43B—C43—H43C | 109.5 |
C9—C10—C11 | 123.1 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3i | 0.82 | 1.94 | 2.720 (5) | 159 |
Symmetry code: (i) x+1/2, −y+5/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C29H29N3O4)]·2C7H8 |
Mr | 726.53 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 150 |
a, b, c (Å) | 11.2660 (14), 12.8570 (9), 24.527 (3) |
V (Å3) | 3552.7 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.60 |
Crystal size (mm) | 0.36 × 0.23 × 0.20 |
Data collection | |
Diffractometer | Bruker–Nonius KappaCCD area-detector diffractometer |
Absorption correction | Gaussian (Coppens, 1970) |
Tmin, Tmax | 0.852, 0.924 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21133, 7165, 6170 |
Rint | 0.103 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.142, 1.01 |
No. of reflections | 7165 |
No. of parameters | 461 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.41, −0.44 |
Absolute structure | Flack (1983), 3089 Friedel pairs |
Absolute structure parameter | 0.000 (17) |
Computer programs: COLLECT (Hooft, 1998) and DENZO (Otwinowski & Minor, 1997), SIR92 (Altomare et al., 1994), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3i | 0.82 | 1.94 | 2.720 (5) | 158.8 |
Symmetry code: (i) x+1/2, −y+5/2, −z+2. |
Acknowledgements
ZP and MN thank the Ministry of Education, Youth and Sports of the Czech Republic for financial support of this work within the framework of research project MSM 0021627501.
References
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Substituted Ni(II) complexes of Schiff bases derived from (S)-N-(2-benzoylphenyl)-1-benzylpyrrolidine-2-carboxamide and α-amino acids are intermediates for the synthesis of radiotracers for positron emission tomography (Fasth & Långström 1990, Popkov et al., 2010). In the search for efficient and cheap radiotracers new approaches employing ω-labelled amino acids are being developed (Bourdier et al., 2011). We published the first structure of a complex bearing a hydroxy group in ω-position of the amino acid fragment side chain (Popkov et al., 2008), which was used for MP2 modelling and topological QTAIM analysis of reactivity of the complexes in alkylation reactions (Popkov & Breza, 2010). The absolute configuration of the chiral centres of this diastereomer is SS. Due to our interest in chiral nickel (II) complexes suitable for charge density studies (Kožíšek et al., 2004), we intended to compare charge densities of two diastereomers of the same complex. In this communication we describe structure of the SR-diastereomer {2-[(R)-({2-(S)-1- benzylpyrrolidine-2-carboxamido]phenyl}(phenyl)methyleneamino]-4- hydroxybutanoato-κN-4,N',N'',O} nickel(II) (Ni(II) complex of the Schiff base from (S)-N-(2-benzoylphenyl)-1-benzylpyrrolidine-2-carboxamide and (R)-2-amino-4-hydroxybutanoic acid), which is a candidate for charge density measurement. Structures of the two diastereomers differ a lot. Like in complexes derived from quaternary α-amino acids (Langer et al., 2007) in the SR-diastereomer steric repulsion of the benzyl group and the side chain is very strong. It compensates steric factors which distort the coordination plane of the SS-complex and the SR-complex is approaching an ideal square-planar coordination. Unlike the SS -diastereomer where the hydrogen bond O4—H4AW···O3 is intramolecular, in the SR-complex a bond O2—H2···O3 is intermolecular. In both diastereomers the benzyl group is in apical position towards the nickel atom.