organic compounds
4,10-Bis(pyridin-2-ylmethyl)-1,7-dithia-4,10-diazoniacyclododecane bis(perchlorate)
aDepartment of Chemistry, Nanchang University, Nanchang 330031, People's Republic of China
*Correspondence e-mail: weizh@ncu.edu.cn
The 20H30N4S2+. 2ClO4− comprises one macrocyclic cation and two perchlorate anions. In the cation, one of the protonated H atoms bound to the amide N atom is involved in an intramolecular N—H⋯N hydrogen bond. The O atoms in the two perchlorate anions are disordered over two sets of sites with occupancy ratios of 0.65 (3):0.35 (3) and 0.640 (15):0.360 (15).
of the title compound CRelated literature
For tunable physicochemical and functional properties of macrocyclic ligands, see: Fabbrizzi et al. (1999). For applications of transition metal complexes with macrocyclic ligands, see: De Silva et al. (2003); Habata et al. (2006); Bilgin et al. (2009); Bernier et al. (2011). For similar structures, see: Peng et al. (2009); Wasitlewski & Mattes (1990); Funkemeier & Mattes (1993); Chak & McAuley (2006).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811032715/jj2097sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811032715/jj2097Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811032715/jj2097Isup3.cml
A mixture of ligand 4-(pyridin-2-ylmethyl)-1,7-dithia-4,10-diazacyclododecane (1.5 g, 5 mmol) and 2-(chloromethyl)pyridine (0.64 g, 5 mmol) in dry toluene (50 ml) was refluxed under an Ar atmosphere for 48 h in the presence of K2CO3 (1.40 g, 10.14 mmol) and KI (0.84 g, 5.05 mmol). The resulting orange solution was filtered, and the solvent was removed under reduced pressure. The obtained solid was purified by
using ethyl acetate as the eluant to give a pale yellow solid 4,10-bis(pyridin-2-ylmethyl)-1,7-dithia-4,10-diazacyclododecane, L (1.5 g, 79%). Reaction of L with Zn(ClO4)2. 6H2O) in MeCN in the presence of little acid afforded a solution. Diffusion of Et2O into the MeCN solution gave single crystals of the title product with 25% yield.In title complex, oxygen atoms in two perchlorate anions exhibited disorder over two positions. The O(1)—O(4) oxygen atoms bonded to the Cl1 atom, and the O(5)—O(8) oxygen atoms bonded to the Cl2 atom, were split into two fragments with occupancy factors of O(1)—O(4)/O(1 A)—O(4 A) = 0.65 (3)/0.35 (3), and O(5)—O(8)/O(5 A)—O(8 A) = 0.640 (15)/0.360 (15). Hydrogen atoms for the carbon atoms were placed in geometrically idealized positions and constrained to ride on their parent with C—H = 0.97 Å and 0.93 Å for methylene and aryl type H-atoms, respectively, and refined in a riding mode with Uiso(H) = 1.2Ueq(C). The H atoms on the amino atoms were located from the Fourier map and were allowed to refine freely.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C20H30N4S22+·2(ClO4−) | Z = 2 |
Mr = 589.52 | F(000) = 616 |
Triclinic, P1 | Dx = 1.508 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.4491 (6) Å | Cell parameters from 5215 reflections |
b = 11.6146 (7) Å | θ = 2.4–27.9° |
c = 11.7795 (7) Å | µ = 0.46 mm−1 |
α = 96.167 (1)° | T = 296 K |
β = 90.340 (1)° | Block, colorless |
γ = 113.830 (1)° | 0.35 × 0.30 × 0.25 mm |
V = 1298.23 (13) Å3 |
Bruker APEXII CCD diffractometer | 6516 independent reflections |
Radiation source: fine-focus sealed tube | 4865 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
Thin slice ϕ & ω scans | θmax = 28.4°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −13→12 |
Tmin = 0.850, Tmax = 0.891 | k = −15→15 |
12276 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0546P)2 + 0.4486P] where P = (Fo2 + 2Fc2)/3 |
6516 reflections | (Δ/σ)max = 0.001 |
407 parameters | Δρmax = 0.37 e Å−3 |
84 restraints | Δρmin = −0.37 e Å−3 |
C20H30N4S22+·2(ClO4−) | γ = 113.830 (1)° |
Mr = 589.52 | V = 1298.23 (13) Å3 |
Triclinic, P1 | Z = 2 |
a = 10.4491 (6) Å | Mo Kα radiation |
b = 11.6146 (7) Å | µ = 0.46 mm−1 |
c = 11.7795 (7) Å | T = 296 K |
α = 96.167 (1)° | 0.35 × 0.30 × 0.25 mm |
β = 90.340 (1)° |
Bruker APEXII CCD diffractometer | 6516 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 4865 reflections with I > 2σ(I) |
Tmin = 0.850, Tmax = 0.891 | Rint = 0.018 |
12276 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 84 restraints |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.37 e Å−3 |
6516 reflections | Δρmin = −0.37 e Å−3 |
407 parameters |
Experimental. Characterization of ligand: 4,10-bis(pyridin-2-ylmethyl)-1,7-dithia-4,10-diazacyclododecane: 1H NMR (CDCl3): 8.455 (d, J = 4.52, py—H), 7.604 (t, J = 15.08, py—H), 7.475 (d, J = 7.79, py—H), 7.097 (t, J = 12.18, py—H), 3.739 (s, py—CH2), 2.802 (t, J = 13.08, NCH2CH2), 2.729 (t, J = 13.02, NCH2CH2). 13C NMR (CDCl3): 159.26, 149.06, 136.50, 123.05, 122.12, 61.35, 52.54, 26.66. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.39671 (6) | 0.14286 (5) | 0.65754 (5) | 0.05266 (15) | |
S2 | 0.48251 (5) | 0.13448 (5) | 1.00606 (5) | 0.04540 (14) | |
N1 | 0.21785 (17) | −0.03948 (15) | 0.83251 (14) | 0.0387 (3) | |
N2 | 0.61643 (17) | 0.35034 (16) | 0.84963 (16) | 0.0444 (4) | |
N3 | 0.34391 (19) | −0.16697 (17) | 0.71127 (16) | 0.0513 (4) | |
N4 | 0.7232 (2) | 0.19581 (18) | 0.74762 (17) | 0.0541 (4) | |
C1 | 0.4072 (3) | −0.2237 (3) | 0.6405 (2) | 0.0610 (6) | |
H1 | 0.4842 | −0.1727 | 0.6033 | 0.073* | |
C2 | 0.3645 (3) | −0.3522 (2) | 0.6201 (2) | 0.0595 (6) | |
H2 | 0.4120 | −0.3872 | 0.5709 | 0.071* | |
C3 | 0.2501 (3) | −0.4286 (2) | 0.6738 (2) | 0.0600 (6) | |
H3 | 0.2181 | −0.5164 | 0.6609 | 0.072* | |
C4 | 0.1835 (2) | −0.3728 (2) | 0.7471 (2) | 0.0519 (5) | |
H4 | 0.1064 | −0.4221 | 0.7852 | 0.062* | |
C5 | 0.23386 (19) | −0.24212 (18) | 0.76281 (16) | 0.0398 (4) | |
C6 | 0.1675 (2) | −0.17756 (18) | 0.84537 (18) | 0.0438 (4) | |
H6A | 0.0665 | −0.2179 | 0.8320 | 0.053* | |
H6B | 0.1898 | −0.1870 | 0.9229 | 0.053* | |
C7 | 0.1455 (2) | −0.0218 (2) | 0.7285 (2) | 0.0515 (5) | |
H7A | 0.1414 | −0.0853 | 0.6663 | 0.062* | |
H7B | 0.0499 | −0.0362 | 0.7458 | 0.062* | |
C8 | 0.2161 (2) | 0.1076 (2) | 0.6893 (2) | 0.0532 (5) | |
H8A | 0.2133 | 0.1712 | 0.7485 | 0.064* | |
H8B | 0.1655 | 0.1112 | 0.6214 | 0.064* | |
C9 | 0.1998 (2) | 0.0353 (2) | 0.93856 (18) | 0.0469 (5) | |
H9A | 0.1049 | −0.0067 | 0.9622 | 0.056* | |
H9B | 0.2121 | 0.1186 | 0.9207 | 0.056* | |
C10 | 0.3007 (2) | 0.05079 (19) | 1.03664 (17) | 0.0460 (5) | |
H10A | 0.2865 | −0.0324 | 1.0561 | 0.055* | |
H10B | 0.2800 | 0.0965 | 1.1027 | 0.055* | |
C11 | 0.4678 (3) | 0.3147 (2) | 0.6720 (2) | 0.0606 (6) | |
H11A | 0.5516 | 0.3453 | 0.6291 | 0.073* | |
H11B | 0.4001 | 0.3403 | 0.6381 | 0.073* | |
C12 | 0.5040 (2) | 0.3773 (2) | 0.7943 (2) | 0.0543 (5) | |
H12A | 0.5350 | 0.4682 | 0.7953 | 0.065* | |
H12B | 0.4207 | 0.3470 | 0.8378 | 0.065* | |
C13 | 0.5041 (2) | 0.29796 (19) | 1.03629 (19) | 0.0521 (5) | |
H13A | 0.4205 | 0.3061 | 1.0094 | 0.063* | |
H13B | 0.5174 | 0.3235 | 1.1182 | 0.063* | |
C14 | 0.6293 (2) | 0.3825 (2) | 0.9775 (2) | 0.0533 (5) | |
H14A | 0.6412 | 0.4698 | 0.9958 | 0.064* | |
H14B | 0.7125 | 0.3757 | 1.0069 | 0.064* | |
C15 | 0.7559 (2) | 0.4119 (2) | 0.7978 (2) | 0.0571 (6) | |
H15A | 0.8295 | 0.4504 | 0.8579 | 0.069* | |
H15B | 0.7552 | 0.4780 | 0.7543 | 0.069* | |
C16 | 0.7840 (2) | 0.3135 (2) | 0.72044 (18) | 0.0479 (5) | |
C17 | 0.7505 (3) | 0.1055 (3) | 0.6860 (2) | 0.0642 (6) | |
H17 | 0.7076 | 0.0225 | 0.7034 | 0.077* | |
C18 | 0.8396 (3) | 0.1311 (3) | 0.5980 (2) | 0.0791 (9) | |
H18 | 0.8592 | 0.0671 | 0.5581 | 0.095* | |
C19 | 0.8991 (3) | 0.2522 (4) | 0.5698 (2) | 0.0868 (10) | |
H19 | 0.9586 | 0.2712 | 0.5096 | 0.104* | |
C20 | 0.8703 (3) | 0.3455 (3) | 0.6311 (2) | 0.0677 (7) | |
H20 | 0.9082 | 0.4282 | 0.6126 | 0.081* | |
Cl1 | 0.07973 (5) | 0.30206 (4) | 0.92855 (4) | 0.04391 (13) | |
O1 | 0.1496 (11) | 0.2960 (8) | 1.0304 (5) | 0.0704 (15) | 0.65 (3) |
O2 | −0.0140 (9) | 0.1779 (8) | 0.8848 (8) | 0.0671 (19) | 0.65 (3) |
O3 | 0.0093 (11) | 0.3821 (9) | 0.9534 (8) | 0.0776 (19) | 0.65 (3) |
O4 | 0.1840 (8) | 0.3539 (7) | 0.8490 (7) | 0.077 (2) | 0.65 (3) |
O1A | 0.1935 (18) | 0.3149 (12) | 1.003 (2) | 0.082 (5) | 0.35 (3) |
O2A | −0.0087 (13) | 0.1694 (11) | 0.9035 (16) | 0.057 (3) | 0.35 (3) |
O3A | 0.0013 (17) | 0.3660 (14) | 0.9828 (18) | 0.075 (4) | 0.35 (3) |
O4A | 0.130 (3) | 0.3533 (14) | 0.8256 (12) | 0.106 (5) | 0.35 (3) |
Cl2 | 0.77446 (5) | 0.71112 (5) | 0.63800 (4) | 0.04936 (14) | |
O5 | 0.7051 (8) | 0.7250 (11) | 0.7361 (3) | 0.143 (5) | 0.640 (15) |
O6 | 0.8883 (4) | 0.6809 (5) | 0.6678 (5) | 0.074 (2) | 0.640 (15) |
O7 | 0.8261 (6) | 0.8223 (5) | 0.5868 (9) | 0.136 (4) | 0.640 (15) |
O8 | 0.6782 (6) | 0.6138 (6) | 0.5611 (5) | 0.111 (3) | 0.640 (15) |
O5A | 0.7899 (12) | 0.8133 (10) | 0.7147 (11) | 0.124 (5) | 0.360 (15) |
O6A | 0.8869 (9) | 0.6775 (10) | 0.6571 (9) | 0.086 (5) | 0.360 (15) |
O7A | 0.7803 (15) | 0.7432 (18) | 0.5294 (7) | 0.152 (8) | 0.360 (15) |
O8A | 0.6522 (6) | 0.6099 (9) | 0.6511 (16) | 0.146 (10) | 0.360 (15) |
H1A | 0.304 (2) | −0.011 (2) | 0.8194 (19) | 0.047 (6)* | |
H1B | 0.594 (2) | 0.268 (2) | 0.8319 (19) | 0.054 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0584 (3) | 0.0548 (3) | 0.0439 (3) | 0.0224 (3) | 0.0024 (2) | 0.0043 (2) |
S2 | 0.0438 (3) | 0.0413 (3) | 0.0502 (3) | 0.0173 (2) | −0.0050 (2) | 0.0018 (2) |
N1 | 0.0315 (8) | 0.0370 (8) | 0.0453 (9) | 0.0132 (6) | −0.0011 (7) | −0.0012 (7) |
N2 | 0.0392 (9) | 0.0323 (8) | 0.0586 (11) | 0.0122 (7) | 0.0048 (7) | 0.0023 (7) |
N3 | 0.0492 (10) | 0.0452 (9) | 0.0525 (10) | 0.0128 (8) | 0.0094 (8) | 0.0020 (8) |
N4 | 0.0549 (11) | 0.0486 (10) | 0.0573 (11) | 0.0211 (9) | 0.0074 (9) | −0.0002 (8) |
C1 | 0.0543 (13) | 0.0687 (15) | 0.0564 (14) | 0.0219 (12) | 0.0157 (11) | 0.0039 (12) |
C2 | 0.0682 (15) | 0.0702 (15) | 0.0518 (13) | 0.0427 (13) | 0.0046 (11) | −0.0035 (11) |
C3 | 0.0730 (16) | 0.0469 (12) | 0.0644 (15) | 0.0312 (12) | 0.0016 (12) | −0.0018 (11) |
C4 | 0.0514 (12) | 0.0419 (11) | 0.0581 (13) | 0.0150 (9) | 0.0062 (10) | 0.0043 (9) |
C5 | 0.0371 (9) | 0.0387 (9) | 0.0408 (10) | 0.0136 (8) | −0.0026 (8) | 0.0004 (8) |
C6 | 0.0413 (10) | 0.0366 (9) | 0.0485 (11) | 0.0113 (8) | 0.0059 (8) | 0.0023 (8) |
C7 | 0.0433 (11) | 0.0504 (12) | 0.0571 (13) | 0.0170 (9) | −0.0137 (9) | 0.0002 (10) |
C8 | 0.0517 (12) | 0.0557 (13) | 0.0560 (13) | 0.0262 (10) | −0.0088 (10) | 0.0051 (10) |
C9 | 0.0407 (10) | 0.0459 (11) | 0.0560 (12) | 0.0220 (9) | 0.0065 (9) | −0.0047 (9) |
C10 | 0.0532 (12) | 0.0428 (10) | 0.0397 (10) | 0.0182 (9) | 0.0102 (9) | 0.0003 (8) |
C11 | 0.0657 (15) | 0.0578 (13) | 0.0571 (14) | 0.0208 (11) | −0.0007 (11) | 0.0194 (11) |
C12 | 0.0530 (12) | 0.0455 (11) | 0.0679 (15) | 0.0236 (10) | −0.0001 (11) | 0.0076 (10) |
C13 | 0.0576 (13) | 0.0412 (11) | 0.0509 (12) | 0.0167 (9) | 0.0003 (10) | −0.0085 (9) |
C14 | 0.0490 (12) | 0.0411 (11) | 0.0590 (13) | 0.0107 (9) | −0.0052 (10) | −0.0081 (9) |
C15 | 0.0444 (11) | 0.0405 (11) | 0.0772 (16) | 0.0078 (9) | 0.0129 (11) | 0.0068 (10) |
C16 | 0.0371 (10) | 0.0536 (12) | 0.0489 (12) | 0.0151 (9) | 0.0006 (9) | 0.0020 (9) |
C17 | 0.0759 (17) | 0.0615 (15) | 0.0601 (15) | 0.0366 (13) | −0.0060 (13) | −0.0072 (12) |
C18 | 0.0822 (19) | 0.105 (2) | 0.0592 (16) | 0.0554 (19) | −0.0064 (14) | −0.0240 (16) |
C19 | 0.0719 (19) | 0.119 (3) | 0.0550 (16) | 0.0290 (19) | 0.0155 (14) | −0.0095 (17) |
C20 | 0.0587 (15) | 0.0762 (17) | 0.0548 (14) | 0.0143 (13) | 0.0084 (11) | 0.0054 (12) |
Cl1 | 0.0434 (3) | 0.0362 (2) | 0.0537 (3) | 0.01821 (19) | 0.0054 (2) | 0.00373 (19) |
O1 | 0.068 (4) | 0.084 (3) | 0.060 (3) | 0.034 (3) | −0.012 (2) | 0.0022 (18) |
O2 | 0.057 (3) | 0.047 (3) | 0.086 (3) | 0.012 (2) | −0.016 (2) | −0.003 (2) |
O3 | 0.088 (4) | 0.071 (3) | 0.101 (4) | 0.060 (3) | 0.009 (3) | 0.005 (3) |
O4 | 0.076 (3) | 0.060 (2) | 0.079 (3) | 0.0132 (19) | 0.033 (2) | 0.003 (2) |
O1A | 0.050 (6) | 0.044 (4) | 0.148 (11) | 0.021 (4) | −0.039 (6) | −0.013 (5) |
O2A | 0.040 (5) | 0.033 (4) | 0.098 (8) | 0.013 (3) | 0.009 (5) | 0.007 (4) |
O3A | 0.097 (6) | 0.057 (4) | 0.091 (8) | 0.049 (4) | 0.029 (5) | 0.014 (5) |
O4A | 0.151 (14) | 0.085 (6) | 0.086 (6) | 0.043 (8) | 0.051 (7) | 0.051 (5) |
Cl2 | 0.0486 (3) | 0.0477 (3) | 0.0509 (3) | 0.0183 (2) | −0.0043 (2) | 0.0072 (2) |
O5 | 0.141 (7) | 0.260 (13) | 0.065 (2) | 0.127 (9) | 0.025 (3) | −0.008 (4) |
O6 | 0.054 (3) | 0.069 (4) | 0.092 (4) | 0.015 (3) | −0.022 (3) | 0.026 (3) |
O7 | 0.135 (4) | 0.090 (4) | 0.179 (9) | 0.028 (3) | −0.035 (5) | 0.073 (4) |
O8 | 0.091 (4) | 0.101 (5) | 0.120 (5) | 0.035 (3) | −0.048 (3) | −0.053 (4) |
O5A | 0.108 (7) | 0.107 (7) | 0.154 (10) | 0.055 (6) | 0.017 (7) | −0.047 (7) |
O6A | 0.070 (8) | 0.124 (11) | 0.099 (8) | 0.070 (7) | 0.039 (6) | 0.035 (7) |
O7A | 0.176 (14) | 0.24 (2) | 0.073 (6) | 0.104 (16) | −0.007 (6) | 0.081 (8) |
O8A | 0.039 (3) | 0.096 (8) | 0.30 (3) | 0.005 (4) | 0.001 (7) | 0.101 (13) |
S1—C8 | 1.813 (2) | C11—C12 | 1.514 (3) |
S1—C11 | 1.814 (2) | C11—H11A | 0.9700 |
S2—C10 | 1.810 (2) | C11—H11B | 0.9700 |
S2—C13 | 1.814 (2) | C12—H12A | 0.9700 |
N1—C6 | 1.498 (2) | C12—H12B | 0.9700 |
N1—C9 | 1.501 (3) | C13—C14 | 1.508 (3) |
N1—C7 | 1.511 (3) | C13—H13A | 0.9700 |
N1—H1A | 0.85 (2) | C13—H13B | 0.9700 |
N2—C12 | 1.495 (3) | C14—H14A | 0.9700 |
N2—C14 | 1.504 (3) | C14—H14B | 0.9700 |
N2—C15 | 1.507 (3) | C15—C16 | 1.508 (3) |
N2—H1B | 0.89 (2) | C15—H15A | 0.9700 |
N3—C5 | 1.328 (3) | C15—H15B | 0.9700 |
N3—C1 | 1.344 (3) | C16—C20 | 1.373 (3) |
N4—C16 | 1.330 (3) | C17—C18 | 1.373 (4) |
N4—C17 | 1.338 (3) | C17—H17 | 0.9300 |
C1—C2 | 1.367 (3) | C18—C19 | 1.368 (5) |
C1—H1 | 0.9300 | C18—H18 | 0.9300 |
C2—C3 | 1.374 (4) | C19—C20 | 1.373 (4) |
C2—H2 | 0.9300 | C19—H19 | 0.9300 |
C3—C4 | 1.378 (3) | C20—H20 | 0.9300 |
C3—H3 | 0.9300 | Cl1—O3 | 1.410 (6) |
C4—C5 | 1.381 (3) | Cl1—O2 | 1.413 (7) |
C4—H4 | 0.9300 | Cl1—O4A | 1.418 (10) |
C5—C6 | 1.503 (3) | Cl1—O1A | 1.422 (10) |
C6—H6A | 0.9700 | Cl1—O1 | 1.423 (6) |
C6—H6B | 0.9700 | Cl1—O3A | 1.424 (11) |
C7—C8 | 1.508 (3) | Cl1—O4 | 1.425 (6) |
C7—H7A | 0.9700 | Cl1—O2A | 1.437 (11) |
C7—H7B | 0.9700 | Cl2—O5A | 1.365 (6) |
C8—H8A | 0.9700 | Cl2—O7A | 1.365 (6) |
C8—H8B | 0.9700 | Cl2—O8A | 1.366 (5) |
C9—C10 | 1.505 (3) | Cl2—O7 | 1.389 (4) |
C9—H9A | 0.9700 | Cl2—O5 | 1.396 (4) |
C9—H9B | 0.9700 | Cl2—O8 | 1.400 (4) |
C10—H10A | 0.9700 | Cl2—O6A | 1.403 (7) |
C10—H10B | 0.9700 | Cl2—O6 | 1.421 (4) |
C8—S1—C11 | 100.22 (12) | H13A—C13—H13B | 108.2 |
C10—S2—C13 | 101.11 (10) | N2—C14—C13 | 113.20 (17) |
C6—N1—C9 | 111.86 (16) | N2—C14—H14A | 108.9 |
C6—N1—C7 | 110.19 (15) | C13—C14—H14A | 108.9 |
C9—N1—C7 | 111.66 (16) | N2—C14—H14B | 108.9 |
C6—N1—H1A | 108.5 (15) | C13—C14—H14B | 108.9 |
C9—N1—H1A | 108.7 (15) | H14A—C14—H14B | 107.8 |
C7—N1—H1A | 105.7 (15) | N2—C15—C16 | 109.51 (17) |
C12—N2—C14 | 112.94 (17) | N2—C15—H15A | 109.8 |
C12—N2—C15 | 112.52 (18) | C16—C15—H15A | 109.8 |
C14—N2—C15 | 111.17 (17) | N2—C15—H15B | 109.8 |
C12—N2—H1B | 106.4 (15) | C16—C15—H15B | 109.8 |
C14—N2—H1B | 109.7 (15) | H15A—C15—H15B | 108.2 |
C15—N2—H1B | 103.5 (15) | N4—C16—C20 | 123.1 (2) |
C5—N3—C1 | 116.90 (19) | N4—C16—C15 | 115.22 (19) |
C16—N4—C17 | 118.0 (2) | C20—C16—C15 | 121.6 (2) |
N3—C1—C2 | 123.6 (2) | N4—C17—C18 | 122.2 (3) |
N3—C1—H1 | 118.2 | N4—C17—H17 | 118.9 |
C2—C1—H1 | 118.2 | C18—C17—H17 | 118.9 |
C1—C2—C3 | 118.7 (2) | C19—C18—C17 | 119.1 (3) |
C1—C2—H2 | 120.6 | C19—C18—H18 | 120.5 |
C3—C2—H2 | 120.6 | C17—C18—H18 | 120.5 |
C2—C3—C4 | 118.8 (2) | C18—C19—C20 | 119.4 (3) |
C2—C3—H3 | 120.6 | C18—C19—H19 | 120.3 |
C4—C3—H3 | 120.6 | C20—C19—H19 | 120.3 |
C3—C4—C5 | 118.6 (2) | C16—C20—C19 | 118.2 (3) |
C3—C4—H4 | 120.7 | C16—C20—H20 | 120.9 |
C5—C4—H4 | 120.7 | C19—C20—H20 | 120.9 |
N3—C5—C4 | 123.37 (19) | O3—Cl1—O2 | 111.7 (3) |
N3—C5—C6 | 116.43 (17) | O3—Cl1—O4A | 93.2 (8) |
C4—C5—C6 | 120.16 (18) | O2—Cl1—O4A | 100.5 (9) |
N1—C6—C5 | 111.39 (16) | O3—Cl1—O1A | 119.0 (9) |
N1—C6—H6A | 109.4 | O2—Cl1—O1A | 117.5 (7) |
C5—C6—H6A | 109.4 | O4A—Cl1—O1A | 110.3 (5) |
N1—C6—H6B | 109.4 | O3—Cl1—O1 | 109.2 (3) |
C5—C6—H6B | 109.4 | O2—Cl1—O1 | 108.7 (3) |
H6A—C6—H6B | 108.0 | O4A—Cl1—O1 | 132.2 (10) |
C8—C7—N1 | 113.97 (16) | O2—Cl1—O3A | 108.6 (10) |
C8—C7—H7A | 108.8 | O4A—Cl1—O3A | 109.5 (5) |
N1—C7—H7A | 108.8 | O1A—Cl1—O3A | 110.0 (5) |
C8—C7—H7B | 108.8 | O1—Cl1—O3A | 96.1 (9) |
N1—C7—H7B | 108.8 | O3—Cl1—O4 | 109.7 (3) |
H7A—C7—H7B | 107.7 | O2—Cl1—O4 | 110.1 (3) |
C7—C8—S1 | 111.49 (15) | O1A—Cl1—O4 | 85.3 (9) |
C7—C8—H8A | 109.3 | O1—Cl1—O4 | 107.4 (3) |
S1—C8—H8A | 109.3 | O3A—Cl1—O4 | 124.4 (7) |
C7—C8—H8B | 109.3 | O3—Cl1—O2A | 115.5 (9) |
S1—C8—H8B | 109.3 | O4A—Cl1—O2A | 109.6 (5) |
H8A—C8—H8B | 108.0 | O1A—Cl1—O2A | 108.1 (5) |
N1—C9—C10 | 113.65 (16) | O1—Cl1—O2A | 98.1 (8) |
N1—C9—H9A | 108.8 | O3A—Cl1—O2A | 109.4 (5) |
C10—C9—H9A | 108.8 | O4—Cl1—O2A | 115.9 (8) |
N1—C9—H9B | 108.8 | O5A—Cl2—O7A | 109.7 (5) |
C10—C9—H9B | 108.8 | O5A—Cl2—O8A | 111.1 (5) |
H9A—C9—H9B | 107.7 | O7A—Cl2—O8A | 111.1 (5) |
C9—C10—S2 | 113.47 (14) | O5A—Cl2—O7 | 69.0 (5) |
C9—C10—H10A | 108.9 | O8A—Cl2—O7 | 141.3 (4) |
S2—C10—H10A | 108.9 | O5A—Cl2—O5 | 47.2 (4) |
C9—C10—H10B | 108.9 | O7A—Cl2—O5 | 136.7 (5) |
S2—C10—H10B | 108.9 | O8A—Cl2—O5 | 65.0 (5) |
H10A—C10—H10B | 107.7 | O7—Cl2—O5 | 110.9 (3) |
C12—C11—S1 | 114.19 (15) | O5A—Cl2—O8 | 143.4 (4) |
C12—C11—H11A | 108.7 | O7A—Cl2—O8 | 67.6 (6) |
S1—C11—H11A | 108.7 | O8A—Cl2—O8 | 46.7 (6) |
C12—C11—H11B | 108.7 | O7—Cl2—O8 | 109.0 (3) |
S1—C11—H11B | 108.7 | O5—Cl2—O8 | 108.0 (3) |
H11A—C11—H11B | 107.6 | O5A—Cl2—O6A | 108.4 (5) |
N2—C12—C11 | 111.90 (19) | O7A—Cl2—O6A | 107.7 (4) |
N2—C12—H12A | 109.2 | O8A—Cl2—O6A | 108.7 (4) |
C11—C12—H12A | 109.2 | O7—Cl2—O6A | 107.5 (5) |
N2—C12—H12B | 109.2 | O5—Cl2—O6A | 114.3 (5) |
C11—C12—H12B | 109.2 | O8—Cl2—O6A | 106.9 (5) |
H12A—C12—H12B | 107.9 | O5A—Cl2—O6 | 104.1 (5) |
C14—C13—S2 | 109.68 (15) | O7A—Cl2—O6 | 112.2 (6) |
C14—C13—H13A | 109.7 | O8A—Cl2—O6 | 108.6 (4) |
S2—C13—H13A | 109.7 | O7—Cl2—O6 | 108.8 (3) |
C14—C13—H13B | 109.7 | O5—Cl2—O6 | 109.5 (3) |
S2—C13—H13B | 109.7 | O8—Cl2—O6 | 110.6 (3) |
C5—N3—C1—C2 | −0.3 (4) | C8—S1—C11—C12 | 80.8 (2) |
N3—C1—C2—C3 | 0.5 (4) | C14—N2—C12—C11 | −165.53 (18) |
C1—C2—C3—C4 | −0.7 (4) | C15—N2—C12—C11 | 67.6 (2) |
C2—C3—C4—C5 | 0.6 (4) | S1—C11—C12—N2 | 62.8 (2) |
C1—N3—C5—C4 | 0.2 (3) | C10—S2—C13—C14 | −159.75 (16) |
C1—N3—C5—C6 | 177.6 (2) | C12—N2—C14—C13 | 67.5 (2) |
C3—C4—C5—N3 | −0.4 (3) | C15—N2—C14—C13 | −164.93 (18) |
C3—C4—C5—C6 | −177.7 (2) | S2—C13—C14—N2 | 60.1 (2) |
C9—N1—C6—C5 | −157.83 (16) | C12—N2—C15—C16 | −103.4 (2) |
C7—N1—C6—C5 | 77.3 (2) | C14—N2—C15—C16 | 128.8 (2) |
N3—C5—C6—N1 | 13.8 (2) | C17—N4—C16—C20 | 1.5 (3) |
C4—C5—C6—N1 | −168.68 (18) | C17—N4—C16—C15 | −176.4 (2) |
C6—N1—C7—C8 | −163.84 (18) | N2—C15—C16—N4 | −27.6 (3) |
C9—N1—C7—C8 | 71.2 (2) | N2—C15—C16—C20 | 154.5 (2) |
N1—C7—C8—S1 | 57.5 (2) | C16—N4—C17—C18 | 0.9 (4) |
C11—S1—C8—C7 | −157.69 (17) | N4—C17—C18—C19 | −2.1 (4) |
C6—N1—C9—C10 | 72.1 (2) | C17—C18—C19—C20 | 1.0 (5) |
C7—N1—C9—C10 | −163.87 (17) | N4—C16—C20—C19 | −2.5 (4) |
N1—C9—C10—S2 | 61.1 (2) | C15—C16—C20—C19 | 175.2 (2) |
C13—S2—C10—C9 | 83.22 (16) | C18—C19—C20—C16 | 1.2 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1B···N4 | 0.89 (2) | 2.06 (2) | 2.661 (3) | 123.6 (19) |
Experimental details
Crystal data | |
Chemical formula | C20H30N4S22+·2(ClO4−) |
Mr | 589.52 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 10.4491 (6), 11.6146 (7), 11.7795 (7) |
α, β, γ (°) | 96.167 (1), 90.340 (1), 113.830 (1) |
V (Å3) | 1298.23 (13) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.46 |
Crystal size (mm) | 0.35 × 0.30 × 0.25 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.850, 0.891 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12276, 6516, 4865 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.114, 1.04 |
No. of reflections | 6516 |
No. of parameters | 407 |
No. of restraints | 84 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.37, −0.37 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1B···N4 | 0.89 (2) | 2.06 (2) | 2.661 (3) | 123.6 (19) |
Acknowledgements
The authors acknowledge the Education Department of Jiangxi Province (GJJ11033) and Nanchang University for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Macrocyclic ligands have the ability to form transition metal complexes with tunable physicochemical and functional properties (Fabbrizzi et al. 1999). The resulting complexes are found to have diverse applications such as with medicinal inorganic compounds, photosensitizers in solar cells, catalysts for organic transformations, molecular devices based on tunable properties, mimics for enzymes catalyzing redox and hydrolytic processes (De Silva et al. 2003; Habata et al. 2006; Bilgin et al. 2009; Bernier et al. 2011). Among the large number of known macrocyclic ligands, there has been particular interest in the preparation and characterization of macrocyclic ligands with pendant substituents (Peng et al. 2009; Wasitlewski et al. 1990). For example, N, S-functionalized macrocycles with pyridyl pendant arms may enhance their metal-ion selectivity depending on their the macrocyclic ring size as well as the pendent moiety. These novel ligands containing the thioether donors as well as aliphatic and pyridyl nitrogen donors, provide a strong mixed nitrogen/sulfur metal coordination environment (Funkemeier et al. 1993). In this work, the structure of the title compound with the {py2N2S2}-donor set as a macrocyclic cation is reported.
In the cation, the twelve-membered ring adopts a distorted crown conformation with the sulfur and nitrogen atoms at the point and carbon atoms at the edges (Fig. 1). Due to the preference of C—S bonds to adopt a gauche conformation, the sulfur atoms are oriented with their lone pairs pointing out of the ring (Chak et al. 2006). The protonated hydrogen atoms bound to the amide atoms are oriented at the inner cavity. The two pyridyl pendent arms are located at the same side, but not parallel to each other with the dihedral angle between the pyridyl rings being 14.61 (13)°. The H1B atom bonded to N2 is involved in a N2—H1B···N4 intramolecular hydrogen bond. There are no hydrogen bonds between the O atoms of ClO4- and the amide H atoms. The ClO4- anions are embedded in the cavity formed by cations (Fig. 2).