organic compounds
2-(5,6-Dihydrobenzimidazo[1,2-c]quinazolin-6-yl)-5-methylphenol
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Chemistry, Faculty of Pure and Applied Sciences, International University of Africa, Sudan, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C21H17N3O, the imidazole ring is essentially planar, with a maximum deviation of 0.009 (1) Å. The molecule is disordered over two sites corresponding to a rotation of approximately 180° with a refined occupancy ratio of 0.9180 (14):0.0820 (14). The central pyrimidine ring makes dihedral angles of 5.02 (5), 3.97 (5) and 6.28 (5)°, respectively, with the planes of the imidazole and the terminal phenyl rings for the major component; the values for the minor component are 5.8 (7), 5.0 (6) and 8.5 (6)°, respectively. Part of the observed planarity is accounted for in terms of an intramolecular N—H⋯O hydrogen bond. In the crystal, molecules of the major component are connected by O—H⋯N hydrogen bonds, forming supramolecular chains along the c axis.
Related literature
For applications of benzimidazoles, see: Sun et al. (2010); Harrell et al. (2004). For related structures, see: Eltayeb et al. (2007, 2009, 2011). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811032673/tk2779sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811032673/tk2779Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811032673/tk2779Isup3.cml
To a solution of 2-(2-aminophenyl)-1H-benzimidazole (0.418 g, 2.0 mmol) in ethanol (30 mL) was added 2-hydroxy-4-methylbenzaldehyde (0.272 g, 2.0 mmol). The mixture was refluxed with stirring for two hours after which the colour of the resulting solution turned pale-yellow. Colourless crystals were formed after several days of slow evaporation of its ethanol solution held at room temperature.
Atom H1O1 was located from a difference Fourier maps and refined freely [O—H = 0.919 (16) Å]. The N—H H atoms were located from a difference map and fixed at those positions and refined with Uiso(H) = 1.2 Ueq(N). The remaining H atoms were positioned geometrically [C—H = 0.95–1.00 Å] and were refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating group model was applied to the methyl groups. The molecule is disordered over two sites with a refined occupancy ratio of 0.9180 (14):0.0820 (14); the minor component was refined with isotropic displacement parameters.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008; molecular graphics: SHELXTL (Sheldrick, 2008; software used to prepare material for publication: SHELXTL (Sheldrick, 2008 and PLATON (Spek, 2009).C21H17N3O | F(000) = 1376 |
Mr = 327.38 | Dx = 1.371 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 7250 reflections |
a = 15.1292 (3) Å | θ = 2.4–33.4° |
b = 12.2648 (2) Å | µ = 0.09 mm−1 |
c = 17.1909 (3) Å | T = 100 K |
β = 96.233 (1)° | Block, colourless |
V = 3171.03 (10) Å3 | 0.59 × 0.21 × 0.20 mm |
Z = 8 |
Bruker SMART APEXII CCD area-detector diffractometer | 6164 independent reflections |
Radiation source: fine-focus sealed tube | 4808 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ϕ and ω scans | θmax = 33.5°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −23→21 |
Tmin = 0.951, Tmax = 0.983 | k = −18→19 |
24277 measured reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.126 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0635P)2 + 1.1622P] where P = (Fo2 + 2Fc2)/3 |
6164 reflections | (Δ/σ)max = 0.001 |
296 parameters | Δρmax = 0.41 e Å−3 |
44 restraints | Δρmin = −0.25 e Å−3 |
C21H17N3O | V = 3171.03 (10) Å3 |
Mr = 327.38 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.1292 (3) Å | µ = 0.09 mm−1 |
b = 12.2648 (2) Å | T = 100 K |
c = 17.1909 (3) Å | 0.59 × 0.21 × 0.20 mm |
β = 96.233 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 6164 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4808 reflections with I > 2σ(I) |
Tmin = 0.951, Tmax = 0.983 | Rint = 0.029 |
24277 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 44 restraints |
wR(F2) = 0.126 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.41 e Å−3 |
6164 reflections | Δρmin = −0.25 e Å−3 |
296 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.11427 (4) | 0.39987 (6) | 1.02884 (4) | 0.02061 (14) | |
C14 | 0.09940 (6) | 0.43709 (8) | 0.86934 (5) | 0.01907 (17) | |
H14A | 0.0600 | 0.3742 | 0.8790 | 0.023* | 0.9180 (14) |
H14B | 0.0558 | 0.4551 | 0.9038 | 0.023* | 0.0820 (14) |
C15 | 0.18959 (6) | 0.41867 (7) | 0.91603 (5) | 0.01793 (16) | |
C16 | 0.26904 (6) | 0.41994 (8) | 0.88195 (5) | 0.02215 (18) | |
H16A | 0.2675 | 0.4300 | 0.8270 | 0.027* | |
C17 | 0.35059 (6) | 0.40677 (8) | 0.92684 (5) | 0.02231 (18) | |
H17A | 0.4040 | 0.4083 | 0.9025 | 0.027* | |
C18 | 0.35418 (6) | 0.39130 (7) | 1.00739 (5) | 0.01832 (16) | |
C19 | 0.27492 (6) | 0.38872 (7) | 1.04197 (5) | 0.01798 (16) | |
H19A | 0.2766 | 0.3778 | 1.0968 | 0.022* | |
C20 | 0.19305 (5) | 0.40201 (7) | 0.99689 (5) | 0.01667 (15) | |
C21 | 0.44220 (6) | 0.37331 (8) | 1.05544 (5) | 0.02230 (18) | |
H21A | 0.4406 | 0.4057 | 1.1074 | 0.033* | |
H21B | 0.4895 | 0.4076 | 1.0294 | 0.033* | |
H21C | 0.4537 | 0.2949 | 1.0608 | 0.033* | |
N1 | 0.10675 (5) | 0.44305 (7) | 0.78585 (4) | 0.01890 (16) | 0.9180 (14) |
N2 | 0.14473 (6) | 0.52085 (8) | 0.67606 (5) | 0.02089 (17) | 0.9180 (14) |
N3 | 0.05600 (5) | 0.53695 (7) | 0.89063 (5) | 0.02081 (17) | 0.9180 (14) |
H1N3 | 0.0569 | 0.5417 | 0.9427 | 0.031* | 0.9180 (14) |
C1 | 0.12136 (6) | 0.35766 (10) | 0.73616 (6) | 0.01981 (19) | 0.9180 (14) |
C2 | 0.11768 (7) | 0.24516 (11) | 0.74523 (7) | 0.0247 (2) | 0.9180 (14) |
H2A | 0.1025 | 0.2128 | 0.7922 | 0.030* | 0.9180 (14) |
C3 | 0.13738 (8) | 0.18239 (10) | 0.68194 (8) | 0.0260 (2) | 0.9180 (14) |
H3A | 0.1354 | 0.1052 | 0.6855 | 0.031* | 0.9180 (14) |
C4 | 0.16018 (8) | 0.23106 (12) | 0.61273 (6) | 0.0255 (2) | 0.9180 (14) |
H4A | 0.1736 | 0.1858 | 0.5707 | 0.031* | 0.9180 (14) |
C5 | 0.16364 (7) | 0.34331 (11) | 0.60427 (6) | 0.0238 (2) | 0.9180 (14) |
H5A | 0.1787 | 0.3755 | 0.5572 | 0.029* | 0.9180 (14) |
C6 | 0.14422 (6) | 0.40766 (9) | 0.66750 (6) | 0.02034 (19) | 0.9180 (14) |
C7 | 0.12315 (7) | 0.53821 (11) | 0.74761 (7) | 0.01833 (19) | 0.9180 (14) |
C8 | 0.11421 (6) | 0.64094 (9) | 0.78768 (6) | 0.01890 (18) | 0.9180 (14) |
C9 | 0.13375 (7) | 0.74150 (10) | 0.75533 (6) | 0.0228 (2) | 0.9180 (14) |
H9A | 0.1549 | 0.7441 | 0.7053 | 0.027* | 0.9180 (14) |
C10 | 0.12243 (8) | 0.83764 (11) | 0.79570 (8) | 0.0267 (2) | 0.9180 (14) |
H10A | 0.1356 | 0.9060 | 0.7736 | 0.032* | 0.9180 (14) |
C11 | 0.09131 (8) | 0.83251 (12) | 0.86945 (7) | 0.0254 (2) | 0.9180 (14) |
H11A | 0.0844 | 0.8979 | 0.8978 | 0.030* | 0.9180 (14) |
C12 | 0.07047 (7) | 0.73363 (10) | 0.90174 (6) | 0.0229 (2) | 0.9180 (14) |
H12A | 0.0484 | 0.7319 | 0.9514 | 0.027* | 0.9180 (14) |
C13 | 0.08176 (6) | 0.63642 (9) | 0.86160 (6) | 0.01901 (18) | 0.9180 (14) |
N1X | 0.1041 (7) | 0.5258 (8) | 0.8082 (6) | 0.028 (2)* | 0.0820 (14) |
N2X | 0.1354 (7) | 0.6061 (8) | 0.6958 (6) | 0.029 (2)* | 0.0820 (14) |
N3X | 0.0707 (8) | 0.3422 (9) | 0.8217 (6) | 0.034 (3)* | 0.0820 (14) |
H3XB | 0.0286 | 0.3007 | 0.8375 | 0.040* | 0.0820 (14) |
C1X | 0.1029 (6) | 0.6359 (7) | 0.8222 (6) | 0.0121 (17)* | 0.0820 (14) |
C2X | 0.0875 (8) | 0.6912 (10) | 0.8879 (6) | 0.019 (2)* | 0.0820 (14) |
H2XA | 0.0751 | 0.6539 | 0.9339 | 0.023* | 0.0820 (14) |
C3X | 0.0905 (11) | 0.7992 (12) | 0.8855 (9) | 0.029 (4)* | 0.0820 (14) |
H3XA | 0.0785 | 0.8413 | 0.9295 | 0.035* | 0.0820 (14) |
C4X | 0.1115 (12) | 0.8496 (12) | 0.8177 (9) | 0.030 (4)* | 0.0820 (14) |
H4XA | 0.1149 | 0.9269 | 0.8181 | 0.035* | 0.0820 (14) |
C5X | 0.1276 (9) | 0.7977 (10) | 0.7500 (7) | 0.028 (3)* | 0.0820 (14) |
H5XA | 0.1411 | 0.8352 | 0.7044 | 0.034* | 0.0820 (14) |
C6X | 0.1223 (8) | 0.6841 (9) | 0.7548 (6) | 0.021 (2)* | 0.0820 (14) |
C7X | 0.1253 (14) | 0.5126 (10) | 0.7308 (9) | 0.034 (5)* | 0.0820 (14) |
C8X | 0.1320 (7) | 0.3976 (8) | 0.7053 (7) | 0.0171 (19)* | 0.0820 (14) |
C9X | 0.1614 (7) | 0.3764 (9) | 0.6341 (7) | 0.017 (2)* | 0.0820 (14) |
H9XA | 0.1765 | 0.4355 | 0.6025 | 0.021* | 0.0820 (14) |
C10X | 0.1692 (11) | 0.2743 (12) | 0.6081 (8) | 0.029 (3)* | 0.0820 (14) |
H10B | 0.1906 | 0.2606 | 0.5591 | 0.034* | 0.0820 (14) |
C11X | 0.1456 (11) | 0.1902 (12) | 0.6538 (9) | 0.030 (4)* | 0.0820 (14) |
H11B | 0.1510 | 0.1172 | 0.6365 | 0.036* | 0.0820 (14) |
C12X | 0.1147 (9) | 0.2095 (10) | 0.7232 (8) | 0.025 (3)* | 0.0820 (14) |
H12B | 0.0983 | 0.1493 | 0.7534 | 0.031* | 0.0820 (14) |
C13X | 0.1062 (9) | 0.3127 (10) | 0.7517 (7) | 0.025 (2)* | 0.0820 (14) |
H1O1 | 0.1244 (10) | 0.4082 (13) | 1.0822 (10) | 0.046 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0165 (3) | 0.0344 (4) | 0.0115 (3) | −0.0010 (2) | 0.0041 (2) | −0.0009 (2) |
C14 | 0.0158 (4) | 0.0302 (4) | 0.0115 (3) | −0.0020 (3) | 0.0024 (3) | 0.0028 (3) |
C15 | 0.0160 (4) | 0.0263 (4) | 0.0116 (3) | −0.0006 (3) | 0.0019 (3) | 0.0011 (3) |
C16 | 0.0182 (4) | 0.0354 (5) | 0.0132 (4) | −0.0006 (3) | 0.0032 (3) | 0.0027 (3) |
C17 | 0.0163 (4) | 0.0340 (5) | 0.0172 (4) | 0.0000 (3) | 0.0042 (3) | 0.0021 (3) |
C18 | 0.0172 (4) | 0.0218 (4) | 0.0157 (4) | 0.0005 (3) | 0.0007 (3) | 0.0002 (3) |
C19 | 0.0176 (4) | 0.0241 (4) | 0.0121 (3) | 0.0005 (3) | 0.0011 (3) | 0.0000 (3) |
C20 | 0.0158 (3) | 0.0221 (4) | 0.0124 (3) | −0.0005 (3) | 0.0031 (3) | −0.0009 (3) |
C21 | 0.0180 (4) | 0.0285 (4) | 0.0199 (4) | 0.0017 (3) | −0.0004 (3) | 0.0023 (3) |
N1 | 0.0170 (3) | 0.0294 (4) | 0.0104 (3) | −0.0026 (3) | 0.0021 (2) | 0.0019 (3) |
N2 | 0.0194 (4) | 0.0322 (4) | 0.0114 (3) | 0.0007 (3) | 0.0031 (3) | 0.0018 (3) |
N3 | 0.0171 (4) | 0.0327 (4) | 0.0135 (3) | 0.0030 (3) | 0.0060 (3) | 0.0039 (3) |
C1 | 0.0157 (4) | 0.0308 (5) | 0.0127 (4) | −0.0031 (4) | 0.0006 (3) | −0.0001 (4) |
C2 | 0.0242 (5) | 0.0323 (6) | 0.0174 (5) | −0.0038 (4) | 0.0020 (4) | −0.0006 (4) |
C3 | 0.0249 (5) | 0.0312 (6) | 0.0214 (6) | −0.0048 (4) | 0.0012 (4) | −0.0016 (4) |
C4 | 0.0237 (5) | 0.0340 (7) | 0.0182 (5) | −0.0030 (5) | 0.0002 (3) | −0.0039 (4) |
C5 | 0.0229 (5) | 0.0349 (6) | 0.0138 (4) | −0.0010 (4) | 0.0023 (3) | −0.0020 (4) |
C6 | 0.0167 (4) | 0.0323 (5) | 0.0118 (4) | −0.0013 (4) | 0.0007 (3) | 0.0000 (4) |
C7 | 0.0127 (4) | 0.0315 (5) | 0.0108 (4) | −0.0006 (4) | 0.0015 (3) | 0.0033 (4) |
C8 | 0.0146 (4) | 0.0301 (5) | 0.0122 (4) | 0.0028 (3) | 0.0027 (3) | 0.0034 (3) |
C9 | 0.0219 (5) | 0.0298 (6) | 0.0177 (4) | 0.0039 (4) | 0.0060 (3) | 0.0051 (4) |
C10 | 0.0266 (6) | 0.0327 (6) | 0.0222 (6) | 0.0056 (4) | 0.0093 (4) | 0.0059 (5) |
C11 | 0.0262 (5) | 0.0291 (6) | 0.0220 (5) | 0.0065 (5) | 0.0075 (4) | 0.0021 (5) |
C12 | 0.0208 (4) | 0.0316 (5) | 0.0170 (4) | 0.0062 (4) | 0.0050 (3) | 0.0013 (4) |
C13 | 0.0136 (4) | 0.0312 (5) | 0.0124 (4) | 0.0031 (3) | 0.0021 (3) | 0.0030 (3) |
O1—C20 | 1.3658 (10) | C7—C8 | 1.4493 (18) |
O1—H1O1 | 0.919 (16) | C8—C9 | 1.3976 (15) |
C14—N1 | 1.4534 (11) | C8—C13 | 1.4122 (13) |
C14—N3 | 1.4551 (13) | C9—C10 | 1.3883 (19) |
C14—N3X | 1.462 (12) | C9—H9A | 0.9500 |
C14—N1X | 1.520 (10) | C10—C11 | 1.4010 (17) |
C14—C15 | 1.5230 (12) | C10—H10A | 0.9500 |
C14—H14A | 1.0000 | C11—C12 | 1.3842 (17) |
C14—H14B | 0.9600 | C11—H11A | 0.9500 |
C15—C16 | 1.3932 (12) | C12—C13 | 1.3973 (15) |
C15—C20 | 1.4003 (11) | C12—H12A | 0.9500 |
C16—C17 | 1.3918 (13) | N1X—C1X | 1.372 (11) |
C16—H16A | 0.9500 | N1X—C7X | 1.411 (14) |
C17—C18 | 1.3928 (12) | N2X—C7X | 1.310 (14) |
C17—H17A | 0.9500 | N2X—C6X | 1.424 (12) |
C18—C19 | 1.3955 (12) | N3X—C13X | 1.416 (13) |
C18—C21 | 1.5052 (12) | N3X—H3XB | 0.8800 |
C19—C20 | 1.3974 (11) | C1X—C6X | 1.360 (13) |
C19—H19A | 0.9500 | C1X—C2X | 1.360 (13) |
C21—H21A | 0.9800 | C2X—C3X | 1.326 (14) |
C21—H21B | 0.9800 | C2X—H2XA | 0.9500 |
C21—H21C | 0.9800 | C3X—C4X | 1.386 (15) |
N1—C7 | 1.3752 (14) | C3X—H3XA | 0.9500 |
N1—C1 | 1.3843 (13) | C4X—C5X | 1.371 (14) |
N2—C7 | 1.3236 (14) | C4X—H4XA | 0.9500 |
N2—C6 | 1.3959 (14) | C5X—C6X | 1.399 (14) |
N3—C13 | 1.3898 (13) | C5X—H5XA | 0.9500 |
N3—H14B | 1.0293 | C7X—C8X | 1.484 (13) |
N3—H1N3 | 0.8957 | C8X—C9X | 1.372 (13) |
C1—C2 | 1.3904 (17) | C8X—C13X | 1.394 (14) |
C1—C6 | 1.4063 (14) | C9X—C10X | 1.339 (14) |
C2—C3 | 1.3912 (17) | C9X—H9XA | 0.9500 |
C2—H2A | 0.9500 | C10X—C11X | 1.367 (15) |
C3—C4 | 1.4071 (17) | C10X—H10B | 0.9500 |
C3—H3A | 0.9500 | C11X—C12X | 1.349 (14) |
C4—C5 | 1.3860 (18) | C11X—H11B | 0.9500 |
C4—H4A | 0.9500 | C12X—C13X | 1.368 (14) |
C5—C6 | 1.3999 (14) | C12X—H12B | 0.9500 |
C5—H5A | 0.9500 | ||
C20—O1—H1O1 | 109.9 (10) | N2—C6—C1 | 110.13 (9) |
N1—C14—N3 | 106.92 (7) | C5—C6—C1 | 119.82 (10) |
N1—C14—N3X | 62.4 (4) | N2—C7—N1 | 112.53 (12) |
N3—C14—N3X | 134.1 (5) | N2—C7—C8 | 128.81 (10) |
N3—C14—N1X | 68.1 (4) | N1—C7—C8 | 118.66 (10) |
N3X—C14—N1X | 102.5 (6) | C9—C8—C13 | 120.12 (10) |
N1—C14—C15 | 111.57 (7) | C9—C8—C7 | 122.91 (10) |
N3—C14—C15 | 113.28 (7) | C13—C8—C7 | 116.94 (9) |
N3X—C14—C15 | 111.8 (5) | C10—C9—C8 | 120.51 (10) |
N1X—C14—C15 | 111.4 (4) | C10—C9—H9A | 119.7 |
N1—C14—H14A | 108.3 | C8—C9—H9A | 119.7 |
N3—C14—H14A | 108.3 | C9—C10—C11 | 119.08 (12) |
N3X—C14—H14A | 48.1 | C9—C10—H10A | 120.5 |
N1X—C14—H14A | 137.8 | C11—C10—H10A | 120.5 |
C15—C14—H14A | 108.3 | C12—C11—C10 | 121.04 (12) |
N1—C14—H14B | 136.9 | C12—C11—H11A | 119.5 |
N3X—C14—H14B | 110.3 | C10—C11—H11A | 119.5 |
N1X—C14—H14B | 110.5 | C11—C12—C13 | 120.28 (9) |
C15—C14—H14B | 110.2 | C11—C12—H12A | 119.9 |
H14A—C14—H14B | 67.2 | C13—C12—H12A | 119.9 |
C16—C15—C20 | 118.56 (8) | N3—C13—C12 | 121.17 (9) |
C16—C15—C14 | 122.77 (7) | N3—C13—C8 | 119.74 (9) |
C20—C15—C14 | 118.66 (7) | C12—C13—C8 | 118.94 (9) |
C17—C16—C15 | 121.26 (8) | C1X—N1X—C7X | 106.7 (9) |
C17—C16—H16A | 119.4 | C1X—N1X—C14 | 125.5 (8) |
C15—C16—H16A | 119.4 | C7X—N1X—C14 | 127.1 (8) |
C16—C17—C18 | 120.23 (8) | C7X—N2X—C6X | 103.3 (9) |
C16—C17—H17A | 119.9 | C13X—N3X—C14 | 124.2 (10) |
C18—C17—H17A | 119.9 | C13X—N3X—H3XB | 117.9 |
C17—C18—C19 | 118.96 (8) | C14—N3X—H3XB | 117.9 |
C17—C18—C21 | 120.15 (8) | C6X—C1X—C2X | 124.2 (9) |
C19—C18—C21 | 120.85 (8) | C6X—C1X—N1X | 105.7 (9) |
C18—C19—C20 | 120.79 (8) | C2X—C1X—N1X | 130.1 (10) |
C18—C19—H19A | 119.6 | C3X—C2X—C1X | 117.6 (10) |
C20—C19—H19A | 119.6 | C3X—C2X—H2XA | 121.2 |
O1—C20—C19 | 122.30 (7) | C1X—C2X—H2XA | 121.2 |
O1—C20—C15 | 117.50 (7) | C2X—C3X—C4X | 118.9 (13) |
C19—C20—C15 | 120.19 (8) | C2X—C3X—H3XA | 120.5 |
C18—C21—H21A | 109.5 | C4X—C3X—H3XA | 120.5 |
C18—C21—H21B | 109.5 | C5X—C4X—C3X | 125.8 (14) |
H21A—C21—H21B | 109.5 | C5X—C4X—H4XA | 117.1 |
C18—C21—H21C | 109.5 | C3X—C4X—H4XA | 117.1 |
H21A—C21—H21C | 109.5 | C4X—C5X—C6X | 113.3 (12) |
H21B—C21—H21C | 109.5 | C4X—C5X—H5XA | 123.4 |
C7—N1—C1 | 107.34 (9) | C6X—C5X—H5XA | 123.4 |
C7—N1—C14 | 123.50 (9) | C1X—C6X—C5X | 120.2 (9) |
C1—N1—C14 | 127.28 (9) | C1X—C6X—N2X | 111.9 (9) |
C7—N2—C6 | 105.01 (9) | C5X—C6X—N2X | 127.9 (10) |
C13—N3—C14 | 119.79 (8) | N2X—C7X—N1X | 112.5 (10) |
C13—N3—H14B | 160.6 | N2X—C7X—C8X | 132.9 (12) |
C13—N3—H1N3 | 109.1 | N1X—C7X—C8X | 114.6 (11) |
C14—N3—H1N3 | 110.4 | C9X—C8X—C13X | 120.4 (9) |
H14B—N3—H1N3 | 81.0 | C9X—C8X—C7X | 118.9 (10) |
N1—C1—C2 | 132.12 (10) | C13X—C8X—C7X | 120.6 (10) |
N1—C1—C6 | 104.97 (10) | C10X—C9X—C8X | 121.7 (10) |
C2—C1—C6 | 122.91 (10) | C10X—C9X—H9XA | 119.2 |
C1—C2—C3 | 116.55 (10) | C8X—C9X—H9XA | 119.2 |
C1—C2—H2A | 121.7 | C9X—C10X—C11X | 118.3 (12) |
C3—C2—H2A | 121.7 | C9X—C10X—H10B | 120.8 |
C2—C3—C4 | 121.30 (12) | C11X—C10X—H10B | 120.8 |
C2—C3—H3A | 119.4 | C12X—C11X—C10X | 120.9 (13) |
C4—C3—H3A | 119.4 | C12X—C11X—H11B | 119.5 |
C5—C4—C3 | 121.71 (11) | C10X—C11X—H11B | 119.5 |
C5—C4—H4A | 119.1 | C11X—C12X—C13X | 122.3 (12) |
C3—C4—H4A | 119.1 | C11X—C12X—H12B | 118.8 |
C4—C5—C6 | 117.71 (10) | C13X—C12X—H12B | 118.8 |
C4—C5—H5A | 121.1 | C12X—C13X—C8X | 116.3 (10) |
C6—C5—H5A | 121.1 | C12X—C13X—N3X | 126.9 (11) |
N2—C6—C5 | 130.04 (10) | C8X—C13X—N3X | 116.8 (10) |
N1—C14—C15—C16 | 6.57 (13) | C9—C10—C11—C12 | −1.08 (18) |
N3—C14—C15—C16 | −114.14 (10) | C10—C11—C12—C13 | 1.18 (17) |
N3X—C14—C15—C16 | 74.4 (5) | C14—N3—C13—C12 | −154.10 (9) |
N1X—C14—C15—C16 | −39.6 (4) | C14—N3—C13—C8 | 30.38 (13) |
N1—C14—C15—C20 | −174.80 (8) | C11—C12—C13—N3 | −175.88 (10) |
N3—C14—C15—C20 | 64.49 (11) | C11—C12—C13—C8 | −0.33 (15) |
N3X—C14—C15—C20 | −107.0 (5) | C9—C8—C13—N3 | 175.03 (9) |
N1X—C14—C15—C20 | 139.0 (4) | C7—C8—C13—N3 | −3.20 (13) |
C20—C15—C16—C17 | −1.02 (14) | C9—C8—C13—C12 | −0.59 (14) |
C14—C15—C16—C17 | 177.62 (9) | C7—C8—C13—C12 | −178.82 (9) |
C15—C16—C17—C18 | 0.38 (15) | N1—C14—N1X—C1X | −179.2 (14) |
C16—C17—C18—C19 | 0.31 (14) | N3—C14—N1X—C1X | 27.4 (9) |
C16—C17—C18—C21 | 177.94 (9) | N3X—C14—N1X—C1X | 160.2 (10) |
C17—C18—C19—C20 | −0.36 (13) | C15—C14—N1X—C1X | −80.1 (10) |
C21—C18—C19—C20 | −177.97 (8) | N1—C14—N1X—C7X | −10.8 (12) |
C18—C19—C20—O1 | 179.97 (8) | N3—C14—N1X—C7X | −164.3 (15) |
C18—C19—C20—C15 | −0.29 (13) | N3X—C14—N1X—C7X | −31.4 (15) |
C16—C15—C20—O1 | −179.28 (8) | C15—C14—N1X—C7X | 88.3 (14) |
C14—C15—C20—O1 | 2.03 (12) | N1—C14—N3X—C13X | 28.9 (9) |
C16—C15—C20—C19 | 0.97 (13) | N3—C14—N3X—C13X | 116.0 (10) |
C14—C15—C20—C19 | −177.72 (8) | N1X—C14—N3X—C13X | 44.5 (12) |
N3—C14—N1—C7 | 36.05 (12) | C15—C14—N3X—C13X | −74.9 (11) |
N3X—C14—N1—C7 | 167.5 (5) | C7X—N1X—C1X—C6X | 0.4 (14) |
N1X—C14—N1—C7 | 10.3 (6) | C14—N1X—C1X—C6X | 170.7 (9) |
C15—C14—N1—C7 | −88.30 (11) | C7X—N1X—C1X—C2X | −178.8 (13) |
N3—C14—N1—C1 | −161.62 (9) | C14—N1X—C1X—C2X | −8.5 (18) |
N3X—C14—N1—C1 | −30.1 (5) | C6X—C1X—C2X—C3X | 0.9 (18) |
N1X—C14—N1—C1 | 172.6 (6) | N1X—C1X—C2X—C3X | 180.0 (13) |
C15—C14—N1—C1 | 74.02 (11) | C1X—C2X—C3X—C4X | −2 (2) |
N1—C14—N3—C13 | −43.94 (11) | C2X—C3X—C4X—C5X | 2 (3) |
N3X—C14—N3—C13 | −111.7 (6) | C3X—C4X—C5X—C6X | −1 (2) |
N1X—C14—N3—C13 | −25.4 (4) | C2X—C1X—C6X—C5X | 0.1 (18) |
C15—C14—N3—C13 | 79.37 (10) | N1X—C1X—C6X—C5X | −179.1 (11) |
C7—N1—C1—C2 | 177.61 (11) | C2X—C1X—C6X—N2X | 179.9 (10) |
C14—N1—C1—C2 | 12.99 (17) | N1X—C1X—C6X—N2X | 0.6 (13) |
C7—N1—C1—C6 | −1.60 (10) | C4X—C5X—C6X—C1X | −0.2 (19) |
C14—N1—C1—C6 | −166.22 (8) | C4X—C5X—C6X—N2X | −179.9 (13) |
N1—C1—C2—C3 | −179.53 (10) | C7X—N2X—C6X—C1X | −1.4 (16) |
C6—C1—C2—C3 | −0.44 (15) | C7X—N2X—C6X—C5X | 178.3 (15) |
C1—C2—C3—C4 | 0.29 (16) | C6X—N2X—C7X—N1X | 1.6 (19) |
C2—C3—C4—C5 | −0.32 (17) | C6X—N2X—C7X—C8X | −178.1 (19) |
C3—C4—C5—C6 | 0.48 (16) | C1X—N1X—C7X—N2X | −1.4 (19) |
C7—N2—C6—C5 | −178.71 (10) | C14—N1X—C7X—N2X | −171.5 (11) |
C7—N2—C6—C1 | 0.18 (11) | C1X—N1X—C7X—C8X | 178.5 (13) |
C4—C5—C6—N2 | 178.19 (10) | C14—N1X—C7X—C8X | 8 (2) |
C4—C5—C6—C1 | −0.61 (14) | N2X—C7X—C8X—C9X | 6 (3) |
N1—C1—C6—N2 | 0.90 (10) | N1X—C7X—C8X—C9X | −173.3 (13) |
C2—C1—C6—N2 | −178.40 (9) | N2X—C7X—C8X—C13X | −171.4 (19) |
N1—C1—C6—C5 | 179.92 (9) | N1X—C7X—C8X—C13X | 9 (2) |
C2—C1—C6—C5 | 0.62 (15) | C13X—C8X—C9X—C10X | −2.4 (18) |
C6—N2—C7—N1 | −1.25 (11) | C7X—C8X—C9X—C10X | 179.7 (14) |
C6—N2—C7—C8 | 179.60 (10) | C8X—C9X—C10X—C11X | 1 (2) |
C1—N1—C7—N2 | 1.86 (12) | C9X—C10X—C11X—C12X | 0 (2) |
C14—N1—C7—N2 | 167.20 (8) | C10X—C11X—C12X—C13X | −1 (2) |
C1—N1—C7—C8 | −178.89 (9) | C11X—C12X—C13X—C8X | −1 (2) |
C14—N1—C7—C8 | −13.55 (14) | C11X—C12X—C13X—N3X | 176.7 (14) |
N2—C7—C8—C9 | −4.22 (17) | C9X—C8X—C13X—C12X | 2.0 (18) |
N1—C7—C8—C9 | 176.67 (9) | C7X—C8X—C13X—C12X | 179.9 (14) |
N2—C7—C8—C13 | 173.96 (10) | C9X—C8X—C13X—N3X | −175.5 (11) |
N1—C7—C8—C13 | −5.15 (14) | C7X—C8X—C13X—N3X | 2.3 (19) |
C13—C8—C9—C10 | 0.68 (15) | C14—N3X—C13X—C12X | 148.8 (13) |
C7—C8—C9—C10 | 178.80 (10) | C14—N3X—C13X—C8X | −33.9 (17) |
C8—C9—C10—C11 | 0.14 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···O1 | 0.90 | 2.39 | 2.9655 (11) | 123 |
O1—H1O1···N2i | 0.919 (16) | 1.830 (16) | 2.7038 (10) | 158.0 (15) |
Symmetry code: (i) x, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H17N3O |
Mr | 327.38 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 15.1292 (3), 12.2648 (2), 17.1909 (3) |
β (°) | 96.233 (1) |
V (Å3) | 3171.03 (10) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.59 × 0.21 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.951, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 24277, 6164, 4808 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.776 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.126, 1.04 |
No. of reflections | 6164 |
No. of parameters | 296 |
No. of restraints | 44 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.25 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008), SHELXTL (Sheldrick, 2008 and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···O1 | 0.90 | 2.39 | 2.9655 (11) | 123 |
O1—H1O1···N2i | 0.919 (16) | 1.830 (16) | 2.7038 (10) | 158.0 (15) |
Symmetry code: (i) x, −y+1, z+1/2. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
NEE and SGT thank the Malaysian Government and Universiti Sains Malaysia for the RU research grant (1001/PKIMIA/815067). NEE also thanks Universiti Sains Malaysia for a post-doctoral fellowship and the International University of Africa (Sudan) for providing study leave. HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811160. MH also thanks the Universiti Sains Malaysia for a post-doctoral research fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazoles are known to be strong chelating agents coordinating through both the C═N N atoms (Sun et al., 2010). The benzimidazole ring system is present in the clinically approved anthelmintics, anti-ulcer, anti-viral, and anti-histamine drugs (Harrell et al., 2004). As part of our on-going structural studies of benzimidazoles (Eltayeb et al., 2007, 2009, 2011), we now describe in this paper the single-crystal X-ray diffraction study of title compound (I).
The molecular structure of (I) is shown in Fig. 1. The 2-(5,6 dihydrobenzimidazo[1,2-c]quinazolin-6-yl) molecule is disordered over two sites corresponding to a rotation of approximately 180\% with a refined occupancy ratio of 0.9180 (14):0.0820 (14). The imidazole (N1/N2/C6/C7/C8) ring is essentially planar, with a maximum deviation of 0.009 (1) Å for atom C7. The central pyrimidine ring makes dihedral angles of 5.02 (5), 3.97 (5), 6.28 (5) ° for the major component, and 5.8 (7), 5.0 (6) and 8.5 (6) ° for the minor component, respectively, with the plane of the imidazole and with those through the terminal phenyl rings.
In the crystal structure (Fig. 2), the molecules of the major component are connected by O1—H1O1···N2 hydrogen bonds (Table 1) forming a supramolecular chain along the c-axis.