organic compounds
1′-Methyl-4′-phenyldispiro[indan-2,2′-pyrrolidine-3′,2′′-indan]-1,3,1′′-trione
aInstitute for Research in Molecular Medicine, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The conformation of the title compound, C27H21NO3, is stabilized by a weak intramolecular C—H⋯O hydrogen bond, which generates an S(6) ring motif. The pyrrolidine ring adopts a half-chair conformation. Both of the other five-membered rings are in envelope conformations. No significant intermolecular hydrogen bonds are observed.
Related literature
For general background to and the biological activity of the title compound, see: Amalraj et al. (2003); Karthikeyan et al. (2010); Chande et al. (2005); Sriram et al. (2009); Duncan & Barry (2004). For reference bond-length data, see: Allen et al. (1987). For related structures, see: Kumar et al. (2010); Wei et al. (2011). For hydrogen-bond motifs, see: Bernstein et al. (1995). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811032934/wn2448sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811032934/wn2448Isup2.hkl
A mixture of (E)-(2-benzylidene)-2,3-dihydro-IH-indene-1-one (0.001 mmol), ninhydrin (0.001 mmol) and sarcosine (0.002 mmol) (1:1:2) was dissolved in methanol (10 ml) and refluxed for 4 h. After completion of the reaction, as evident from TLC, the mixture was poured into water (50 ml). The precipitated solid was filtered, washed with water and recrystallised from a pet. ether - ethyl acetate mixture (1:1) to yield the title compound as yellow crystals.
All H atoms were positioned geometrically and refined using a riding model with C–H = 0.93-0.98 Å and Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating-group model was applied for the methyl group.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 30% probability displacement ellipsoids for non-H atoms. The intramolecular hydrogen bond is shown as a dashed line. |
C27H21NO3 | F(000) = 856 |
Mr = 407.45 | Dx = 1.292 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5963 reflections |
a = 8.4578 (7) Å | θ = 2.6–28.2° |
b = 11.6194 (9) Å | µ = 0.08 mm−1 |
c = 22.6360 (16) Å | T = 296 K |
β = 109.693 (2)° | Block, yellow |
V = 2094.4 (3) Å3 | 0.34 × 0.26 × 0.15 mm |
Z = 4 |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 6084 independent reflections |
Radiation source: fine-focus sealed tube | 3982 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
ϕ and ω scans | θmax = 30.1°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→11 |
Tmin = 0.972, Tmax = 0.988 | k = −15→16 |
23854 measured reflections | l = −31→31 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.163 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0731P)2 + 0.4081P] where P = (Fo2 + 2Fc2)/3 |
6084 reflections | (Δ/σ)max = 0.001 |
281 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C27H21NO3 | V = 2094.4 (3) Å3 |
Mr = 407.45 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.4578 (7) Å | µ = 0.08 mm−1 |
b = 11.6194 (9) Å | T = 296 K |
c = 22.6360 (16) Å | 0.34 × 0.26 × 0.15 mm |
β = 109.693 (2)° |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 6084 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3982 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 0.988 | Rint = 0.035 |
23854 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.163 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.20 e Å−3 |
6084 reflections | Δρmin = −0.21 e Å−3 |
281 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.34827 (16) | 0.31094 (11) | 0.95641 (6) | 0.0717 (4) | |
O2 | 1.00814 (19) | 0.39487 (11) | 0.75292 (5) | 0.0679 (4) | |
O3 | 0.98637 (17) | 0.36481 (11) | 0.97255 (5) | 0.0622 (3) | |
N1 | 1.15973 (17) | 0.19994 (11) | 0.83324 (7) | 0.0517 (3) | |
C1 | 0.7927 (4) | 0.0968 (2) | 0.94738 (12) | 0.0926 (8) | |
H1A | 0.8054 | 0.1696 | 0.9654 | 0.111* | |
C2 | 0.6731 (4) | 0.0227 (2) | 0.95567 (14) | 0.1032 (9) | |
H2A | 0.6047 | 0.0476 | 0.9778 | 0.124* | |
C3 | 0.6549 (3) | −0.0845 (2) | 0.93209 (12) | 0.0863 (7) | |
H3A | 0.5778 | −0.1352 | 0.9390 | 0.104* | |
C4 | 0.7512 (4) | −0.1166 (2) | 0.89819 (17) | 0.1153 (10) | |
H4A | 0.7393 | −0.1902 | 0.8812 | 0.138* | |
C5 | 0.8678 (3) | −0.04216 (18) | 0.88813 (14) | 0.0938 (8) | |
H5A | 0.9306 | −0.0661 | 0.8637 | 0.113* | |
C6 | 0.89185 (19) | 0.06577 (13) | 0.91353 (7) | 0.0457 (3) | |
C7 | 1.02348 (18) | 0.14830 (12) | 0.90680 (7) | 0.0415 (3) | |
H7A | 1.0976 | 0.1668 | 0.9494 | 0.050* | |
C8 | 1.1369 (2) | 0.10356 (15) | 0.87084 (10) | 0.0607 (5) | |
H8A | 1.2442 | 0.0783 | 0.8999 | 0.073* | |
H8B | 1.0839 | 0.0394 | 0.8441 | 0.073* | |
C9 | 1.3153 (3) | 0.2003 (2) | 0.81922 (12) | 0.0852 (7) | |
H9A | 1.3127 | 0.2618 | 0.7906 | 0.128* | |
H9B | 1.3275 | 0.1282 | 0.8005 | 0.128* | |
H9C | 1.4084 | 0.2112 | 0.8573 | 0.128* | |
C10 | 1.11262 (17) | 0.30515 (12) | 0.85686 (7) | 0.0414 (3) | |
C11 | 1.24588 (18) | 0.36203 (13) | 0.91420 (7) | 0.0466 (3) | |
C12 | 1.22771 (17) | 0.48842 (13) | 0.90556 (7) | 0.0424 (3) | |
C13 | 1.2992 (2) | 0.57672 (14) | 0.94769 (8) | 0.0504 (4) | |
H13A | 1.3671 | 0.5608 | 0.9886 | 0.060* | |
C14 | 1.2661 (2) | 0.68821 (15) | 0.92684 (9) | 0.0575 (4) | |
H14A | 1.3126 | 0.7485 | 0.9542 | 0.069* | |
C15 | 1.1648 (2) | 0.71263 (15) | 0.86571 (9) | 0.0599 (4) | |
H15A | 1.1453 | 0.7889 | 0.8529 | 0.072* | |
C16 | 1.0922 (2) | 0.62575 (14) | 0.82347 (8) | 0.0523 (4) | |
H16A | 1.0239 | 0.6422 | 0.7826 | 0.063* | |
C17 | 1.12528 (18) | 0.51301 (13) | 0.84439 (7) | 0.0428 (3) | |
C18 | 1.07040 (19) | 0.40499 (14) | 0.80921 (7) | 0.0461 (3) | |
C19 | 0.95609 (16) | 0.26431 (12) | 0.87430 (6) | 0.0378 (3) | |
C20 | 0.91217 (19) | 0.35346 (12) | 0.91692 (7) | 0.0428 (3) | |
C21 | 0.76765 (19) | 0.42024 (13) | 0.87730 (8) | 0.0477 (4) | |
C22 | 0.7002 (3) | 0.52158 (15) | 0.89235 (11) | 0.0663 (5) | |
H22A | 0.7461 | 0.5559 | 0.9316 | 0.080* | |
C23 | 0.5639 (3) | 0.5683 (2) | 0.84708 (15) | 0.0856 (7) | |
H23A | 0.5155 | 0.6354 | 0.8555 | 0.103* | |
C24 | 0.4974 (3) | 0.5161 (2) | 0.78866 (14) | 0.0898 (8) | |
H24A | 0.4044 | 0.5491 | 0.7588 | 0.108* | |
C25 | 0.5656 (2) | 0.41625 (19) | 0.77349 (10) | 0.0710 (6) | |
H25A | 0.5206 | 0.3829 | 0.7340 | 0.085* | |
C26 | 0.70320 (18) | 0.36772 (13) | 0.81919 (8) | 0.0477 (4) | |
C27 | 0.79686 (18) | 0.25889 (13) | 0.81565 (7) | 0.0456 (3) | |
H27A | 0.8256 | 0.2571 | 0.7776 | 0.055* | |
H27B | 0.7304 | 0.1914 | 0.8167 | 0.055* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0569 (7) | 0.0572 (7) | 0.0736 (8) | −0.0085 (6) | −0.0143 (6) | 0.0166 (6) |
O2 | 0.0945 (10) | 0.0639 (8) | 0.0383 (6) | −0.0176 (7) | 0.0131 (6) | 0.0000 (5) |
O3 | 0.0805 (8) | 0.0580 (7) | 0.0440 (7) | −0.0050 (6) | 0.0155 (6) | −0.0125 (5) |
N1 | 0.0550 (7) | 0.0446 (7) | 0.0638 (9) | −0.0008 (6) | 0.0309 (7) | −0.0027 (6) |
C1 | 0.128 (2) | 0.0670 (13) | 0.119 (2) | −0.0339 (13) | 0.0878 (18) | −0.0193 (13) |
C2 | 0.122 (2) | 0.0954 (19) | 0.125 (2) | −0.0344 (16) | 0.0859 (18) | −0.0022 (16) |
C3 | 0.0723 (13) | 0.0836 (16) | 0.0965 (17) | −0.0276 (12) | 0.0200 (12) | 0.0272 (13) |
C4 | 0.119 (2) | 0.0597 (14) | 0.181 (3) | −0.0419 (14) | 0.069 (2) | −0.0216 (17) |
C5 | 0.0971 (16) | 0.0507 (11) | 0.155 (2) | −0.0228 (11) | 0.0698 (17) | −0.0251 (13) |
C6 | 0.0477 (7) | 0.0391 (7) | 0.0461 (8) | −0.0035 (6) | 0.0103 (6) | 0.0053 (6) |
C7 | 0.0449 (7) | 0.0352 (7) | 0.0431 (8) | −0.0017 (5) | 0.0130 (6) | 0.0005 (6) |
C8 | 0.0684 (11) | 0.0437 (9) | 0.0810 (13) | 0.0068 (8) | 0.0396 (10) | 0.0044 (8) |
C9 | 0.0804 (14) | 0.0779 (14) | 0.122 (2) | 0.0045 (11) | 0.0670 (14) | 0.0036 (13) |
C10 | 0.0420 (7) | 0.0378 (7) | 0.0428 (8) | −0.0054 (5) | 0.0120 (6) | −0.0010 (6) |
C11 | 0.0398 (7) | 0.0463 (8) | 0.0475 (8) | −0.0071 (6) | 0.0064 (6) | 0.0056 (7) |
C12 | 0.0391 (6) | 0.0417 (7) | 0.0457 (8) | −0.0060 (6) | 0.0131 (6) | 0.0017 (6) |
C13 | 0.0497 (8) | 0.0520 (9) | 0.0476 (8) | −0.0098 (7) | 0.0139 (7) | −0.0029 (7) |
C14 | 0.0677 (10) | 0.0469 (9) | 0.0613 (11) | −0.0081 (8) | 0.0260 (9) | −0.0119 (8) |
C15 | 0.0736 (11) | 0.0420 (9) | 0.0670 (11) | 0.0037 (8) | 0.0275 (9) | 0.0034 (8) |
C16 | 0.0571 (9) | 0.0498 (9) | 0.0498 (9) | 0.0016 (7) | 0.0176 (7) | 0.0083 (7) |
C17 | 0.0429 (7) | 0.0429 (8) | 0.0426 (8) | −0.0046 (6) | 0.0146 (6) | 0.0033 (6) |
C18 | 0.0485 (8) | 0.0489 (8) | 0.0396 (8) | −0.0080 (6) | 0.0132 (6) | 0.0010 (6) |
C19 | 0.0380 (6) | 0.0349 (7) | 0.0383 (7) | −0.0038 (5) | 0.0098 (5) | −0.0032 (5) |
C20 | 0.0477 (7) | 0.0362 (7) | 0.0453 (8) | −0.0065 (6) | 0.0170 (6) | −0.0035 (6) |
C21 | 0.0480 (8) | 0.0405 (8) | 0.0611 (10) | 0.0006 (6) | 0.0267 (7) | 0.0062 (7) |
C22 | 0.0780 (12) | 0.0463 (9) | 0.0926 (14) | 0.0087 (8) | 0.0524 (11) | 0.0089 (9) |
C23 | 0.0805 (14) | 0.0618 (13) | 0.134 (2) | 0.0262 (11) | 0.0619 (16) | 0.0306 (14) |
C24 | 0.0582 (11) | 0.0838 (16) | 0.129 (2) | 0.0260 (11) | 0.0339 (13) | 0.0571 (16) |
C25 | 0.0481 (9) | 0.0771 (13) | 0.0796 (13) | 0.0005 (9) | 0.0108 (9) | 0.0307 (11) |
C26 | 0.0370 (7) | 0.0469 (8) | 0.0578 (9) | −0.0028 (6) | 0.0141 (6) | 0.0135 (7) |
C27 | 0.0434 (7) | 0.0443 (8) | 0.0428 (8) | −0.0079 (6) | 0.0064 (6) | −0.0026 (6) |
O1—C11 | 1.2073 (18) | C11—C12 | 1.483 (2) |
O2—C18 | 1.2092 (18) | C12—C13 | 1.393 (2) |
O3—C20 | 1.2102 (18) | C12—C17 | 1.393 (2) |
N1—C10 | 1.4432 (19) | C13—C14 | 1.375 (2) |
N1—C9 | 1.454 (2) | C13—H13A | 0.9300 |
N1—C8 | 1.459 (2) | C14—C15 | 1.389 (3) |
C1—C6 | 1.362 (3) | C14—H14A | 0.9300 |
C1—C2 | 1.388 (3) | C15—C16 | 1.384 (2) |
C1—H1A | 0.9300 | C15—H15A | 0.9300 |
C2—C3 | 1.344 (4) | C16—C17 | 1.389 (2) |
C2—H2A | 0.9300 | C16—H16A | 0.9300 |
C3—C4 | 1.346 (4) | C17—C18 | 1.475 (2) |
C3—H3A | 0.9300 | C19—C27 | 1.5411 (19) |
C4—C5 | 1.387 (3) | C19—C20 | 1.5438 (19) |
C4—H4A | 0.9300 | C20—C21 | 1.470 (2) |
C5—C6 | 1.366 (3) | C21—C26 | 1.384 (2) |
C5—H5A | 0.9300 | C21—C22 | 1.400 (2) |
C6—C7 | 1.515 (2) | C22—C23 | 1.370 (3) |
C7—C8 | 1.542 (2) | C22—H22A | 0.9300 |
C7—C19 | 1.549 (2) | C23—C24 | 1.390 (4) |
C7—H7A | 0.9800 | C23—H23A | 0.9300 |
C8—H8A | 0.9700 | C24—C25 | 1.390 (3) |
C8—H8B | 0.9700 | C24—H24A | 0.9300 |
C9—H9A | 0.9600 | C25—C26 | 1.389 (2) |
C9—H9B | 0.9600 | C25—H25A | 0.9300 |
C9—H9C | 0.9600 | C26—C27 | 1.508 (2) |
C10—C18 | 1.542 (2) | C27—H27A | 0.9700 |
C10—C11 | 1.551 (2) | C27—H27B | 0.9700 |
C10—C19 | 1.5766 (19) | ||
C10—N1—C9 | 117.49 (14) | C14—C13—C12 | 117.91 (16) |
C10—N1—C8 | 109.06 (12) | C14—C13—H13A | 121.0 |
C9—N1—C8 | 115.95 (15) | C12—C13—H13A | 121.0 |
C6—C1—C2 | 121.8 (2) | C13—C14—C15 | 121.34 (16) |
C6—C1—H1A | 119.1 | C13—C14—H14A | 119.3 |
C2—C1—H1A | 119.1 | C15—C14—H14A | 119.3 |
C3—C2—C1 | 120.8 (2) | C16—C15—C14 | 121.36 (16) |
C3—C2—H2A | 119.6 | C16—C15—H15A | 119.3 |
C1—C2—H2A | 119.6 | C14—C15—H15A | 119.3 |
C2—C3—C4 | 118.2 (2) | C15—C16—C17 | 117.45 (15) |
C2—C3—H3A | 120.9 | C15—C16—H16A | 121.3 |
C4—C3—H3A | 120.9 | C17—C16—H16A | 121.3 |
C3—C4—C5 | 121.4 (2) | C16—C17—C12 | 121.24 (14) |
C3—C4—H4A | 119.3 | C16—C17—C18 | 128.89 (14) |
C5—C4—H4A | 119.3 | C12—C17—C18 | 109.83 (13) |
C6—C5—C4 | 121.1 (2) | O2—C18—C17 | 126.70 (14) |
C6—C5—H5A | 119.4 | O2—C18—C10 | 125.44 (14) |
C4—C5—H5A | 119.4 | C17—C18—C10 | 107.82 (12) |
C1—C6—C5 | 116.57 (17) | C27—C19—C20 | 103.96 (11) |
C1—C6—C7 | 120.11 (15) | C27—C19—C7 | 116.64 (11) |
C5—C6—C7 | 123.30 (16) | C20—C19—C7 | 114.48 (12) |
C6—C7—C8 | 116.63 (13) | C27—C19—C10 | 111.13 (11) |
C6—C7—C19 | 115.67 (12) | C20—C19—C10 | 110.71 (11) |
C8—C7—C19 | 103.73 (12) | C7—C19—C10 | 100.09 (11) |
C6—C7—H7A | 106.7 | O3—C20—C21 | 127.61 (14) |
C8—C7—H7A | 106.7 | O3—C20—C19 | 125.02 (14) |
C19—C7—H7A | 106.7 | C21—C20—C19 | 107.37 (12) |
N1—C8—C7 | 106.11 (12) | C26—C21—C22 | 122.67 (16) |
N1—C8—H8A | 110.5 | C26—C21—C20 | 109.10 (13) |
C7—C8—H8A | 110.5 | C22—C21—C20 | 128.23 (17) |
N1—C8—H8B | 110.5 | C23—C22—C21 | 117.4 (2) |
C7—C8—H8B | 110.5 | C23—C22—H22A | 121.3 |
H8A—C8—H8B | 108.7 | C21—C22—H22A | 121.3 |
N1—C9—H9A | 109.5 | C22—C23—C24 | 120.5 (2) |
N1—C9—H9B | 109.5 | C22—C23—H23A | 119.7 |
H9A—C9—H9B | 109.5 | C24—C23—H23A | 119.7 |
N1—C9—H9C | 109.5 | C23—C24—C25 | 122.1 (2) |
H9A—C9—H9C | 109.5 | C23—C24—H24A | 119.0 |
H9B—C9—H9C | 109.5 | C25—C24—H24A | 119.0 |
N1—C10—C18 | 113.94 (12) | C26—C25—C24 | 117.9 (2) |
N1—C10—C11 | 117.22 (13) | C26—C25—H25A | 121.0 |
C18—C10—C11 | 101.33 (11) | C24—C25—H25A | 121.0 |
N1—C10—C19 | 101.41 (11) | C21—C26—C25 | 119.43 (17) |
C18—C10—C19 | 112.68 (12) | C21—C26—C27 | 111.98 (13) |
C11—C10—C19 | 110.70 (11) | C25—C26—C27 | 128.58 (17) |
O1—C11—C12 | 127.32 (14) | C26—C27—C19 | 104.01 (12) |
O1—C11—C10 | 125.30 (15) | C26—C27—H27A | 111.0 |
C12—C11—C10 | 107.33 (12) | C19—C27—H27A | 111.0 |
C13—C12—C17 | 120.70 (14) | C26—C27—H27B | 111.0 |
C13—C12—C11 | 129.62 (14) | C19—C27—H27B | 111.0 |
C17—C12—C11 | 109.66 (13) | H27A—C27—H27B | 109.0 |
C6—C1—C2—C3 | 2.3 (5) | N1—C10—C18—O2 | 32.0 (2) |
C1—C2—C3—C4 | −2.5 (5) | C11—C10—C18—O2 | 158.81 (16) |
C2—C3—C4—C5 | 0.7 (5) | C19—C10—C18—O2 | −82.9 (2) |
C3—C4—C5—C6 | 1.5 (5) | N1—C10—C18—C17 | −145.92 (13) |
C2—C1—C6—C5 | 0.0 (4) | C11—C10—C18—C17 | −19.09 (15) |
C2—C1—C6—C7 | −178.7 (2) | C19—C10—C18—C17 | 99.24 (14) |
C4—C5—C6—C1 | −1.8 (4) | C6—C7—C19—C27 | −42.73 (18) |
C4—C5—C6—C7 | 176.8 (2) | C8—C7—C19—C27 | 86.27 (15) |
C1—C6—C7—C8 | 176.65 (19) | C6—C7—C19—C20 | 78.95 (15) |
C5—C6—C7—C8 | −1.9 (3) | C8—C7—C19—C20 | −152.06 (13) |
C1—C6—C7—C19 | −61.0 (2) | C6—C7—C19—C10 | −162.65 (12) |
C5—C6—C7—C19 | 120.5 (2) | C8—C7—C19—C10 | −33.65 (14) |
C10—N1—C8—C7 | 16.59 (18) | N1—C10—C19—C27 | −80.25 (14) |
C9—N1—C8—C7 | 151.92 (17) | C18—C10—C19—C27 | 41.96 (16) |
C6—C7—C8—N1 | 140.91 (14) | C11—C10—C19—C27 | 154.64 (12) |
C19—C7—C8—N1 | 12.50 (17) | N1—C10—C19—C20 | 164.75 (12) |
C9—N1—C10—C18 | 66.1 (2) | C18—C10—C19—C20 | −73.04 (15) |
C8—N1—C10—C18 | −159.39 (14) | C11—C10—C19—C20 | 39.63 (16) |
C9—N1—C10—C11 | −52.0 (2) | N1—C10—C19—C7 | 43.60 (13) |
C8—N1—C10—C11 | 82.57 (16) | C18—C10—C19—C7 | 165.81 (12) |
C9—N1—C10—C19 | −172.61 (16) | C11—C10—C19—C7 | −81.52 (13) |
C8—N1—C10—C19 | −38.06 (16) | C27—C19—C20—O3 | 162.64 (14) |
N1—C10—C11—O1 | −34.0 (2) | C7—C19—C20—O3 | 34.26 (19) |
C18—C10—C11—O1 | −158.66 (17) | C10—C19—C20—O3 | −77.95 (18) |
C19—C10—C11—O1 | 81.6 (2) | C27—C19—C20—C21 | −17.88 (14) |
N1—C10—C11—C12 | 143.58 (13) | C7—C19—C20—C21 | −146.26 (12) |
C18—C10—C11—C12 | 18.94 (15) | C10—C19—C20—C21 | 101.54 (13) |
C19—C10—C11—C12 | −100.80 (14) | O3—C20—C21—C26 | −169.99 (15) |
O1—C11—C12—C13 | −13.2 (3) | C19—C20—C21—C26 | 10.55 (16) |
C10—C11—C12—C13 | 169.23 (15) | O3—C20—C21—C22 | 10.7 (3) |
O1—C11—C12—C17 | 165.01 (17) | C19—C20—C21—C22 | −168.81 (15) |
C10—C11—C12—C17 | −12.52 (16) | C26—C21—C22—C23 | 0.6 (2) |
C17—C12—C13—C14 | −0.4 (2) | C20—C21—C22—C23 | 179.92 (17) |
C11—C12—C13—C14 | 177.69 (16) | C21—C22—C23—C24 | −0.3 (3) |
C12—C13—C14—C15 | 0.0 (2) | C22—C23—C24—C25 | −0.5 (3) |
C13—C14—C15—C16 | 0.4 (3) | C23—C24—C25—C26 | 0.9 (3) |
C14—C15—C16—C17 | −0.3 (3) | C22—C21—C26—C25 | −0.2 (2) |
C15—C16—C17—C12 | 0.0 (2) | C20—C21—C26—C25 | −179.63 (14) |
C15—C16—C17—C18 | −177.50 (16) | C22—C21—C26—C27 | −179.01 (14) |
C13—C12—C17—C16 | 0.4 (2) | C20—C21—C26—C27 | 1.59 (17) |
C11—C12—C17—C16 | −178.01 (14) | C24—C25—C26—C21 | −0.5 (3) |
C13—C12—C17—C18 | 178.31 (13) | C24—C25—C26—C27 | 178.03 (16) |
C11—C12—C17—C18 | −0.12 (17) | C21—C26—C27—C19 | −12.89 (16) |
C16—C17—C18—O2 | 12.6 (3) | C25—C26—C27—C19 | 168.47 (16) |
C12—C17—C18—O2 | −165.04 (16) | C20—C19—C27—C26 | 18.05 (14) |
C16—C17—C18—C10 | −169.50 (15) | C7—C19—C27—C26 | 145.09 (12) |
C12—C17—C18—C10 | 12.82 (16) | C10—C19—C27—C26 | −101.08 (13) |
Experimental details
Crystal data | |
Chemical formula | C27H21NO3 |
Mr | 407.45 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 8.4578 (7), 11.6194 (9), 22.6360 (16) |
β (°) | 109.693 (2) |
V (Å3) | 2094.4 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.34 × 0.26 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.972, 0.988 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23854, 6084, 3982 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.163, 1.03 |
No. of reflections | 6084 |
No. of parameters | 281 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.21 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Acknowledgements
The authors thank Universiti Sains Malaysia (USM), Penang, Malaysia for providing research facilities. HKF and CKQ also thank USM for the Research University Grant (No. 1001/PFIZIK/811160).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Heterocyclic compounds, especially those with five- and six-membered rings have received considerable attention as a result of their diverse biological activities (Amalraj et al., 2003). Substituted pyrrolidine analogues have high potential in the treatment of tuberculosis (TB) (Karthikeyan et al., 2010). Tuberculosis, an illness caused by Mycobacterium tuberculosis, is the leading cause of worldwide death from infectious diseases (Chande et al., 2005). Problems arise when patients develop bacterial resistance to the first-line drugs and the second-line drugs are too toxic and cannot be employed simultaneously (Sriram et al., 2009). Therefore, there is an impetus for the development of new antitubercular agents to shorten the treatment regime and which are effective against drug-resistant strains of M. tuberculosis (Duncan & Barry, 2004).
The molecular structure is shown in Fig. 1. Bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to those in related crystal structures (Kumar et al., 2010; Wei et al., 2011).
The pyrrolidine ring (N1/C7/C8/C10/C19) is twisted about the C10—C19 bond, with puckering parameters (Cremer & Pople, 1975) Q = 0.4335 (17) Å and ϕ = 126.7 (2)°, thereby adopting a half-chair conformation. The two five-membered carbocyclic rings, C10-C12/C17/C18 and C19-C21/C26/C27, are in envelope conformations: puckering parameters Q = 0.1992 (17) Å and ϕ = 179.8 (5)° with atom C10 at the flap; and Q = 0.1879 (16) Å and ϕ = 355.8 (5)° with atom C19 at the flap, respectively.
If the three benzene rings C1–C6, C12–C17 and C21–C26 are denoted by R4, R5, R6 then the dihedral angles for R4^R5, R5^R6 and R4^R6 are 79.88 (11), 34.21 (9) and 82.39 (12)°, respectively.
The molecular structure is stabilized by an intramolecular C27–H27A···O2 hydrogen bond (Table 1), which generates an S(6) ring motif (Fig. 1, Bernstein et al., 1995). No significant intermolecular hydrogen bond is observed. There is a short contact of 1.94 Å between H5A and H8B.