organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890

2-[3-(1H-Benzimidazol-2-yl)prop­yl]-1-decyl-1H-benzimidazole

aMoroccan Advanced Science, Innovation and Research Foundation, Institute of Nanomaterials and Nanotechnology, Rabat, Morocco, bLaboratoire de Chimie Organique Hétérocyclique, Faculté des Sciences, Université Mohammed V-Agdal, Rabat, Morocco, cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and dChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203 Jeddah, Saudi Arabia
*Correspondence e-mail: seikweng@um.edu.my

(Received 25 August 2011; accepted 26 August 2011; online 31 August 2011)

The asymmetric unit of the title compound, C27H36N4, contains two independent mol­ecules. Except for the atoms of the decyl chain, the non-H atoms of each mol­ecule are approximately coplanar (r.m.s. deviations = 0.075 and 0.164 Å) and the –CH2CH2CH2– link connecting the two benzimidazolyl fused-ring systems is slightly opened up at the middle C atom. The decyl substituent adopts an extended zigzag conformation in both mol­ecules. In the crystal, adjacent mol­ecules inter­act by N—H⋯N hydrogen bonds, generating a chain parallel to the c axis.

Related literature

For 2,2′-(propane-1,3-di­yl)bis­(benzimidazolium) dichloride and hydrogen perchlorate, see: Hu et al. (2006[Hu, B., Deng, X.-T., Wang, C.-G. & Wang, X.-Y. (2006). Acta Cryst. E62, m3477-m3478.]); Sun et al. (2004[Sun, Y., Liu, X.-H., Zhang, X., Song, H.-B. & Liu, X.-L. (2004). Chin. J. Struct. Chem. 23, 803-807.]).

[Scheme 1]

Experimental

Crystal data
  • C27H36N4

  • Mr = 416.60

  • Monoclinic, P 21 /c

  • a = 38.5580 (6) Å

  • b = 13.2052 (2) Å

  • c = 9.9623 (2) Å

  • β = 95.339 (1)°

  • V = 5050.46 (15) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.07 mm−1

  • T = 293 K

  • 0.30 × 0.20 × 0.10 mm

Data collection
  • Bruker APEXII diffractometer

  • 38663 measured reflections

  • 9083 independent reflections

  • 5547 reflections with I > 2σ(I)

  • Rint = 0.038

Refinement
  • R[F2 > 2σ(F2)] = 0.056

  • wR(F2) = 0.165

  • S = 1.02

  • 9083 reflections

  • 567 parameters

  • 36 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.20 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯N2i 0.88 (1) 1.96 (1) 2.813 (2) 162 (2)
N5—H5⋯N6ii 0.88 (1) 2.01 (1) 2.860 (2) 162 (2)
Symmetry codes: (i) [x, -y+{\script{3\over 2}}, z+{\script{1\over 2}}]; (ii) [x, -y+{\script{1\over 2}}, z-{\script{1\over 2}}].

Data collection: APEX2 (Bruker, 2005[Bruker (2005). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); cell refinement: SAINT (Bruker, 2005[Bruker (2005). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.]); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: X-SEED (Barbour, 2001[Barbour, L. J. (2001). J. Supramol. Chem. 1, 189-191.]); software used to prepare material for publication: publCIF (Westrip, 2010[Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925.]).

Supporting information


Comment top

Bis(2-benzimidazolyl)alkanes exhibit anti-viral activity; they are also N-heterocyclic compounds that form complexes with a range of metal salts. The crystal structure of the n-propane derivative is known as its chloride and hydrogen perchlorate salts (Hu et al., 2006; Sun et al., 2004). The nitrogen-bound hydrogen can be removed and the resulting anion used as a nucleophile in reacting with haloalkanes. In this study, the alkane is a ten-carbon chain; however, only one of the two H atoms can be removed. Except for the atoms of the decyl chain, the non-hydrogen atoms of the molecule of C27H26N4 (Scheme I) lie on an approximate plane and the –CH2CH2CH2– link connecting the two benzimidazolyl fused-ring systems is slightly opened up at the middle carbon (Fig. 1). The decyl substitutent adopts an extended zigzag conformation. Adjacent molecules interact by N–H···N hydrogen bonds to generate a chain parallel to the c-axis of the monoclinic unit cell (Table 1).

Related literature top

For 2,2'-(propane-1,3-diyl)bis(benzimidazolium) dichloride and hydrogen perchlorate, see: Hu et al. (2006); Sun et al. (2004).

Experimental top

To 1,3-bis(1H-benzmidazol-2-yl)propane (0.50 g, 1.8 mmol), potassium carbonate (0.82 g, 6 mmol), and tetra-n-butylammonium bromide (0.01 g, 0.03 mmol) in DMF (30 ml) was added 1-bromodecane (0.75 ml, 3.6 mmol). The mixturewas stirred for 48 h. After the completion of the reaction (as monitored byTLC), the inorganic salts were filtered and the solvent was removed under reduced pressure. The residue was purified by crystallization from ethanol. Colorless crystals were isolated.

Refinement top

Carbon-bound H-atoms were placed in calculated positions (C—H 0.93–0.97 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2–1.5U(C). The nitrogen-bound H-atoms were located in a difference Fourier map and were refined with a distance restraint of N–H 0.88±0.01 Å; their temperature factors were refined.

The decane chains of both molecules were tightly restrained by fixing the C–C distances to 1.540±0.005 Å and the 1,3-related C···C distances to 2.51±0.01 Å.

Computing details top

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Figures top
[Figure 1] Fig. 1. Thermal ellipsoid plot (Barbour, 2001) of two molecules of C27H26N4 at the 50% probability level; hydrogen atoms are drawn as arbitrary radius.
2-[3-(1H-Benzimidazol-2-yl)propyl]-1-decyl-1H-benzimidazole top
Crystal data top
C27H36N4F(000) = 1808
Mr = 416.60Dx = 1.096 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8029 reflections
a = 38.5580 (6) Åθ = 2.6–24.4°
b = 13.2052 (2) ŵ = 0.07 mm1
c = 9.9623 (2) ÅT = 293 K
β = 95.339 (1)°Block, colorless
V = 5050.46 (15) Å30.30 × 0.20 × 0.10 mm
Z = 8
Data collection top
Bruker APEXII
diffractometer
5547 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.038
Graphite monochromatorθmax = 25.2°, θmin = 1.6°
ϕ and ω scansh = 4644
38663 measured reflectionsk = 1514
9083 independent reflectionsl = 1111
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0741P)2 + 1.3151P]
where P = (Fo2 + 2Fc2)/3
9083 reflections(Δ/σ)max = 0.001
567 parametersΔρmax = 0.27 e Å3
36 restraintsΔρmin = 0.20 e Å3
Crystal data top
C27H36N4V = 5050.46 (15) Å3
Mr = 416.60Z = 8
Monoclinic, P21/cMo Kα radiation
a = 38.5580 (6) ŵ = 0.07 mm1
b = 13.2052 (2) ÅT = 293 K
c = 9.9623 (2) Å0.30 × 0.20 × 0.10 mm
β = 95.339 (1)°
Data collection top
Bruker APEXII
diffractometer
5547 reflections with I > 2σ(I)
38663 measured reflectionsRint = 0.038
9083 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.05636 restraints
wR(F2) = 0.165H atoms treated by a mixture of independent and constrained refinement
S = 1.02Δρmax = 0.27 e Å3
9083 reflectionsΔρmin = 0.20 e Å3
567 parameters
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.38712 (5)0.73128 (16)0.89834 (17)0.0511 (5)
N20.38956 (5)0.73064 (15)0.67692 (16)0.0503 (5)
N30.50737 (5)0.84168 (15)0.49188 (19)0.0538 (5)
N40.54455 (5)0.94076 (14)0.61882 (18)0.0528 (5)
N51.09927 (5)0.23121 (15)0.68081 (16)0.0486 (5)
N61.09643 (4)0.21660 (15)0.90136 (16)0.0483 (5)
N70.98714 (5)0.37234 (17)1.1126 (2)0.0629 (6)
N80.94086 (5)0.42176 (16)0.9762 (2)0.0600 (5)
C10.35798 (6)0.67934 (18)0.8460 (2)0.0491 (6)
C20.33103 (7)0.6332 (2)0.9050 (3)0.0681 (7)
H20.33010.63330.99790.082*
C30.30579 (7)0.5874 (2)0.8205 (3)0.0790 (8)
H30.28730.55570.85670.095*
C40.30719 (7)0.5872 (2)0.6820 (3)0.0769 (8)
H40.28950.55550.62770.092*
C50.33388 (7)0.6324 (2)0.6228 (2)0.0664 (7)
H5A0.33460.63170.52970.080*
C60.35983 (6)0.67936 (18)0.7071 (2)0.0497 (6)
C70.40487 (5)0.76069 (17)0.79393 (19)0.0448 (5)
C80.43760 (6)0.8199 (2)0.8138 (2)0.0550 (6)
H8A0.45210.79110.88890.066*
H8B0.43200.88880.83810.066*
C90.45816 (6)0.82310 (19)0.6925 (2)0.0521 (6)
H9A0.44350.84860.61550.062*
H9B0.46540.75500.67130.062*
C100.48999 (6)0.89011 (19)0.7176 (2)0.0551 (6)
H10A0.48240.95910.73100.066*
H10B0.50320.86840.80020.066*
C110.51341 (6)0.88951 (17)0.6072 (2)0.0490 (6)
C120.53629 (6)0.86276 (18)0.4222 (2)0.0523 (6)
C130.54351 (7)0.8351 (2)0.2934 (3)0.0665 (7)
H130.52800.79530.23930.080*
C140.57401 (8)0.8679 (2)0.2478 (3)0.0753 (8)
H140.57920.85020.16160.090*
C150.59736 (8)0.9274 (2)0.3283 (3)0.0778 (8)
H150.61800.94780.29500.093*
C160.59076 (7)0.9566 (2)0.4554 (3)0.0678 (7)
H160.60640.99640.50900.081*
C170.55965 (6)0.92400 (18)0.5005 (2)0.0524 (6)
C180.55776 (7)1.0071 (2)0.7284 (2)0.0664 (7)
H18A0.53831.04320.76120.080*
H18B0.57311.05680.69350.080*
C190.57748 (6)0.9520 (2)0.8460 (2)0.0704 (8)
H19A0.58351.00040.91770.084*
H19B0.56220.90190.88030.084*
C200.61033 (6)0.8999 (2)0.8114 (2)0.0690 (7)
H20A0.62540.94920.77410.083*
H20B0.60440.84900.74290.083*
C210.62994 (6)0.8496 (2)0.9333 (2)0.0752 (8)
H21A0.63450.89981.00380.090*
H21B0.61520.79760.96700.090*
C220.66398 (7)0.8024 (2)0.9037 (3)0.0824 (9)
H22A0.67820.85350.86540.099*
H22B0.65940.74950.83690.099*
C230.68426 (7)0.7575 (3)1.0278 (3)0.0852 (9)
H23A0.68740.80931.09680.102*
H23B0.67060.70341.06250.102*
C240.71935 (7)0.7162 (3)1.0024 (3)0.0941 (10)
H24A0.73270.76950.96430.113*
H24B0.71620.66240.93610.113*
C250.74007 (7)0.6753 (2)1.1267 (3)0.0823 (9)
H25A0.74540.73051.18960.099*
H25B0.72590.62661.17000.099*
C260.77357 (8)0.6252 (3)1.0967 (3)0.1020 (11)
H26A0.76830.57271.02970.122*
H26B0.78830.67501.05820.122*
C270.79343 (10)0.5788 (4)1.2187 (4)0.1507 (18)
H27A0.81450.54881.19320.226*
H27B0.77940.52761.25570.226*
H27C0.79900.63031.28520.226*
C281.13001 (6)0.18545 (18)0.7296 (2)0.0460 (5)
C291.15871 (6)0.1521 (2)0.6683 (2)0.0610 (7)
H291.15970.15740.57570.073*
C301.18557 (7)0.1109 (2)0.7504 (3)0.0689 (7)
H301.20540.08880.71260.083*
C311.18397 (7)0.1015 (2)0.8879 (3)0.0678 (7)
H311.20270.07310.94030.081*
C321.15530 (6)0.1332 (2)0.9488 (2)0.0598 (7)
H321.15430.12591.04120.072*
C331.12790 (6)0.17644 (17)0.8678 (2)0.0462 (5)
C341.08043 (5)0.24844 (17)0.78655 (19)0.0441 (5)
C351.04563 (5)0.29683 (19)0.7679 (2)0.0506 (6)
H35A1.03030.25400.70970.061*
H35B1.04780.36090.72180.061*
C361.02870 (5)0.31611 (19)0.8968 (2)0.0500 (6)
H36A1.04320.36170.95420.060*
H36B1.02670.25280.94490.060*
C370.99280 (6)0.3623 (2)0.8659 (2)0.0550 (6)
H37A0.99510.42480.81630.066*
H37B0.97870.31630.80790.066*
C380.97423 (6)0.38446 (18)0.9873 (2)0.0535 (6)
C390.96069 (7)0.4026 (2)1.1895 (3)0.0648 (7)
C400.96023 (9)0.4079 (2)1.3284 (3)0.0868 (9)
H400.97950.38851.38570.104*
C410.93049 (12)0.4425 (3)1.3787 (4)0.1066 (12)
H410.92970.44671.47150.128*
C420.90195 (11)0.4713 (3)1.2950 (5)0.1069 (13)
H420.88220.49381.33290.128*
C430.90158 (8)0.4679 (2)1.1571 (4)0.0885 (10)
H430.88220.48771.10080.106*
C440.93184 (7)0.4333 (2)1.1062 (3)0.0656 (7)
C450.91862 (6)0.4418 (2)0.8529 (3)0.0735 (8)
H45A0.93290.46430.78350.088*
H45B0.90260.49610.86920.088*
C460.89794 (7)0.3488 (2)0.8028 (3)0.0780 (8)
H46A0.91390.29810.77430.094*
H46B0.88640.32060.87660.094*
C470.87103 (7)0.3721 (2)0.6869 (3)0.0827 (9)
H47A0.88260.40050.61320.099*
H47B0.85510.42270.71550.099*
C480.85046 (8)0.2799 (2)0.6364 (3)0.0888 (9)
H48A0.84040.24870.71200.107*
H48B0.86640.23130.60250.107*
C490.82154 (7)0.3012 (2)0.5267 (3)0.0903 (10)
H49A0.83150.32890.44880.108*
H49B0.80600.35180.55860.108*
C500.80075 (8)0.2073 (3)0.4847 (3)0.0972 (10)
H50A0.81640.15830.45010.117*
H50B0.79200.17810.56440.117*
C510.77045 (8)0.2230 (3)0.3803 (4)0.1066 (11)
H51A0.77890.25120.29940.128*
H51B0.75450.27150.41400.128*
C520.75103 (9)0.1247 (3)0.3449 (4)0.1121 (12)
H52A0.76760.07650.31450.135*
H52B0.74300.09770.42700.135*
C530.72123 (10)0.1289 (3)0.2430 (4)0.1321 (15)
H53A0.72920.15190.15860.159*
H53B0.70470.17840.27070.159*
C540.70289 (14)0.0292 (3)0.2197 (5)0.166 (2)
H54A0.68420.03660.14950.249*
H54B0.69360.00780.30120.249*
H54C0.71910.02060.19340.249*
H10.3926 (6)0.7455 (18)0.9840 (12)0.067 (8)*
H51.0936 (5)0.2486 (16)0.5967 (12)0.054 (7)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0542 (11)0.0698 (14)0.0293 (10)0.0004 (10)0.0035 (8)0.0004 (9)
N20.0523 (11)0.0649 (13)0.0333 (9)0.0004 (10)0.0013 (8)0.0037 (9)
N30.0562 (12)0.0523 (13)0.0528 (11)0.0068 (10)0.0040 (9)0.0014 (9)
N40.0550 (11)0.0495 (12)0.0531 (11)0.0102 (10)0.0019 (9)0.0008 (9)
N50.0501 (11)0.0691 (14)0.0272 (9)0.0001 (10)0.0067 (8)0.0010 (9)
N60.0466 (10)0.0670 (13)0.0318 (9)0.0005 (10)0.0063 (8)0.0005 (8)
N70.0643 (13)0.0711 (15)0.0555 (12)0.0132 (12)0.0164 (10)0.0023 (10)
N80.0473 (11)0.0574 (14)0.0766 (14)0.0082 (10)0.0122 (10)0.0005 (11)
C10.0493 (13)0.0556 (15)0.0426 (12)0.0046 (12)0.0055 (10)0.0024 (11)
C20.0650 (16)0.081 (2)0.0611 (15)0.0060 (15)0.0194 (13)0.0051 (14)
C30.0662 (17)0.083 (2)0.090 (2)0.0165 (16)0.0195 (16)0.0003 (17)
C40.0670 (17)0.079 (2)0.083 (2)0.0123 (16)0.0029 (15)0.0106 (16)
C50.0666 (16)0.079 (2)0.0520 (14)0.0061 (15)0.0041 (13)0.0058 (13)
C60.0503 (13)0.0577 (15)0.0404 (12)0.0042 (12)0.0001 (10)0.0012 (11)
C70.0485 (12)0.0542 (15)0.0311 (11)0.0058 (11)0.0010 (9)0.0017 (10)
C80.0553 (14)0.0682 (17)0.0407 (12)0.0033 (13)0.0008 (10)0.0001 (11)
C90.0501 (13)0.0611 (16)0.0450 (12)0.0012 (12)0.0042 (10)0.0031 (11)
C100.0570 (14)0.0544 (15)0.0536 (13)0.0014 (13)0.0030 (11)0.0033 (11)
C110.0517 (13)0.0452 (14)0.0494 (13)0.0004 (12)0.0017 (10)0.0036 (11)
C120.0547 (14)0.0466 (15)0.0556 (14)0.0005 (12)0.0046 (11)0.0041 (11)
C130.0796 (18)0.0598 (17)0.0614 (16)0.0045 (15)0.0140 (14)0.0022 (13)
C140.091 (2)0.073 (2)0.0658 (17)0.0028 (18)0.0291 (16)0.0024 (15)
C150.0711 (18)0.080 (2)0.087 (2)0.0048 (17)0.0299 (16)0.0125 (17)
C160.0627 (16)0.0676 (19)0.0736 (18)0.0124 (14)0.0084 (14)0.0065 (14)
C170.0549 (14)0.0462 (15)0.0562 (14)0.0035 (12)0.0057 (11)0.0067 (11)
C180.0691 (16)0.0594 (17)0.0702 (17)0.0147 (14)0.0035 (13)0.0130 (13)
C190.0655 (16)0.087 (2)0.0580 (15)0.0154 (16)0.0017 (13)0.0142 (14)
C200.0679 (17)0.082 (2)0.0571 (15)0.0145 (15)0.0031 (13)0.0005 (14)
C210.0692 (17)0.099 (2)0.0578 (15)0.0091 (17)0.0063 (13)0.0021 (15)
C220.0798 (19)0.105 (2)0.0627 (17)0.0010 (18)0.0102 (14)0.0103 (16)
C230.081 (2)0.107 (3)0.0690 (18)0.0008 (19)0.0129 (15)0.0071 (17)
C240.090 (2)0.124 (3)0.0691 (19)0.006 (2)0.0107 (16)0.0025 (18)
C250.0752 (19)0.101 (2)0.0703 (18)0.0099 (18)0.0050 (15)0.0006 (17)
C260.086 (2)0.122 (3)0.100 (2)0.008 (2)0.0190 (19)0.021 (2)
C270.110 (3)0.187 (5)0.146 (4)0.032 (3)0.040 (3)0.016 (3)
C280.0467 (12)0.0526 (15)0.0396 (11)0.0016 (11)0.0083 (10)0.0027 (10)
C290.0625 (15)0.0705 (18)0.0528 (14)0.0052 (14)0.0207 (12)0.0015 (12)
C300.0580 (15)0.0743 (19)0.0768 (18)0.0144 (14)0.0186 (14)0.0008 (15)
C310.0568 (15)0.0716 (19)0.0741 (18)0.0103 (14)0.0008 (13)0.0056 (14)
C320.0604 (15)0.0720 (18)0.0463 (13)0.0008 (14)0.0010 (11)0.0055 (12)
C330.0472 (13)0.0544 (15)0.0373 (11)0.0029 (11)0.0046 (10)0.0006 (10)
C340.0445 (12)0.0563 (15)0.0319 (11)0.0048 (11)0.0062 (9)0.0041 (10)
C350.0454 (12)0.0688 (16)0.0380 (11)0.0002 (12)0.0050 (9)0.0014 (11)
C360.0448 (12)0.0637 (16)0.0420 (12)0.0001 (12)0.0061 (9)0.0059 (11)
C370.0493 (13)0.0651 (17)0.0509 (13)0.0039 (12)0.0066 (10)0.0015 (12)
C380.0479 (13)0.0522 (15)0.0622 (15)0.0034 (12)0.0139 (11)0.0004 (12)
C390.0733 (17)0.0580 (17)0.0678 (16)0.0045 (14)0.0313 (14)0.0014 (13)
C400.111 (2)0.081 (2)0.0744 (19)0.0117 (19)0.0398 (18)0.0036 (16)
C410.136 (3)0.099 (3)0.097 (3)0.000 (3)0.070 (3)0.006 (2)
C420.105 (3)0.092 (3)0.136 (3)0.002 (2)0.077 (3)0.022 (2)
C430.0702 (19)0.073 (2)0.128 (3)0.0043 (16)0.0427 (19)0.0122 (19)
C440.0608 (16)0.0524 (17)0.0884 (19)0.0015 (14)0.0316 (15)0.0038 (14)
C450.0552 (15)0.070 (2)0.094 (2)0.0150 (15)0.0035 (14)0.0084 (16)
C460.0695 (17)0.079 (2)0.0837 (19)0.0062 (17)0.0018 (15)0.0002 (16)
C470.0639 (17)0.102 (3)0.082 (2)0.0096 (18)0.0072 (15)0.0118 (18)
C480.089 (2)0.094 (2)0.081 (2)0.007 (2)0.0025 (17)0.0081 (18)
C490.081 (2)0.108 (3)0.080 (2)0.009 (2)0.0016 (16)0.0008 (18)
C500.098 (2)0.104 (3)0.086 (2)0.006 (2)0.0047 (18)0.0102 (19)
C510.088 (2)0.127 (3)0.102 (3)0.009 (2)0.0071 (19)0.010 (2)
C520.128 (3)0.104 (3)0.100 (3)0.002 (3)0.014 (2)0.000 (2)
C530.136 (3)0.138 (4)0.116 (3)0.010 (3)0.026 (3)0.028 (3)
C540.224 (5)0.113 (4)0.146 (4)0.050 (4)0.062 (4)0.030 (3)
Geometric parameters (Å, º) top
N1—C71.354 (3)C24—H24B0.9700
N1—C11.377 (3)C25—C261.507 (3)
N1—H10.880 (10)C25—H25A0.9700
N2—C71.318 (3)C25—H25B0.9700
N2—C61.388 (3)C26—C271.505 (4)
N3—C111.313 (3)C26—H26A0.9700
N3—C121.395 (3)C26—H26B0.9700
N4—C111.374 (3)C27—H27A0.9600
N4—C171.381 (3)C27—H27B0.9600
N4—C181.454 (3)C27—H27C0.9600
N5—C341.353 (3)C28—C291.384 (3)
N5—C281.378 (3)C28—C331.392 (3)
N5—H50.876 (10)C29—C301.371 (3)
N6—C341.317 (3)C29—H290.9300
N6—C331.393 (3)C30—C311.383 (3)
N7—C381.310 (3)C30—H300.9300
N7—C391.390 (3)C31—C321.375 (3)
N8—C381.372 (3)C31—H310.9300
N8—C441.381 (3)C32—C331.391 (3)
N8—C451.455 (3)C32—H320.9300
C1—C21.382 (3)C34—C351.482 (3)
C1—C61.393 (3)C35—C361.515 (3)
C2—C31.367 (4)C35—H35A0.9700
C2—H20.9300C35—H35B0.9700
C3—C41.386 (4)C36—C371.518 (3)
C3—H30.9300C36—H36A0.9700
C4—C51.370 (4)C36—H36B0.9700
C4—H40.9300C37—C381.491 (3)
C5—C61.391 (3)C37—H37A0.9700
C5—H5A0.9300C37—H37B0.9700
C7—C81.483 (3)C39—C441.386 (4)
C8—C91.507 (3)C39—C401.387 (4)
C8—H8A0.9700C40—C411.372 (4)
C8—H8B0.9700C40—H400.9300
C9—C101.515 (3)C41—C421.371 (5)
C9—H9A0.9700C41—H410.9300
C9—H9B0.9700C42—C431.373 (5)
C10—C111.486 (3)C42—H420.9300
C10—H10A0.9700C43—C441.392 (4)
C10—H10B0.9700C43—H430.9300
C12—C131.387 (3)C45—C461.523 (3)
C12—C171.394 (3)C45—H45A0.9700
C13—C141.370 (4)C45—H45B0.9700
C13—H130.9300C46—C471.510 (3)
C14—C151.391 (4)C46—H46A0.9700
C14—H140.9300C46—H46B0.9700
C15—C161.370 (4)C47—C481.513 (3)
C15—H150.9300C47—H47A0.9700
C16—C171.388 (3)C47—H47B0.9700
C16—H160.9300C48—C491.513 (3)
C18—C191.521 (3)C48—H48A0.9700
C18—H18A0.9700C48—H48B0.9700
C18—H18B0.9700C49—C501.514 (3)
C19—C201.509 (3)C49—H49A0.9700
C19—H19A0.9700C49—H49B0.9700
C19—H19B0.9700C50—C511.504 (3)
C20—C211.522 (3)C50—H50A0.9700
C20—H20A0.9700C50—H50B0.9700
C20—H20B0.9700C51—C521.525 (4)
C21—C221.507 (3)C51—H51A0.9700
C21—H21A0.9700C51—H51B0.9700
C21—H21B0.9700C52—C531.462 (3)
C22—C231.521 (3)C52—H52A0.9700
C22—H22A0.9700C52—H52B0.9700
C22—H22B0.9700C53—C541.502 (4)
C23—C241.502 (3)C53—H53A0.9700
C23—H23A0.9700C53—H53B0.9700
C23—H23B0.9700C54—H54A0.9600
C24—C251.509 (3)C54—H54B0.9600
C24—H24A0.9700C54—H54C0.9600
C7—N1—C1107.76 (17)C25—C26—H26B108.9
C7—N1—H1126.1 (16)H26A—C26—H26B107.7
C1—N1—H1126.0 (16)C26—C27—H27A109.5
C7—N2—C6105.45 (17)C26—C27—H27B109.5
C11—N3—C12104.76 (19)H27A—C27—H27B109.5
C11—N4—C17106.49 (18)C26—C27—H27C109.5
C11—N4—C18127.0 (2)H27A—C27—H27C109.5
C17—N4—C18126.3 (2)H27B—C27—H27C109.5
C34—N5—C28107.81 (17)N5—C28—C29132.9 (2)
C34—N5—H5126.6 (14)N5—C28—C33104.99 (18)
C28—N5—H5125.5 (14)C29—C28—C33122.1 (2)
C34—N6—C33105.14 (16)C30—C29—C28117.0 (2)
C38—N7—C39104.9 (2)C30—C29—H29121.5
C38—N8—C44106.3 (2)C28—C29—H29121.5
C38—N8—C45127.4 (2)C29—C30—C31121.7 (2)
C44—N8—C45126.3 (2)C29—C30—H30119.1
N1—C1—C2132.7 (2)C31—C30—H30119.1
N1—C1—C6105.10 (19)C32—C31—C30121.5 (2)
C2—C1—C6122.2 (2)C32—C31—H31119.3
C3—C2—C1117.0 (2)C30—C31—H31119.3
C3—C2—H2121.5C31—C32—C33117.8 (2)
C1—C2—H2121.5C31—C32—H32121.1
C2—C3—C4121.5 (3)C33—C32—H32121.1
C2—C3—H3119.2C32—C33—C28119.9 (2)
C4—C3—H3119.2C32—C33—N6130.44 (19)
C5—C4—C3121.9 (3)C28—C33—N6109.70 (18)
C5—C4—H4119.1N6—C34—N5112.36 (19)
C3—C4—H4119.1N6—C34—C35126.30 (18)
C4—C5—C6117.5 (2)N5—C34—C35121.34 (18)
C4—C5—H5A121.3C34—C35—C36114.99 (18)
C6—C5—H5A121.3C34—C35—H35A108.5
N2—C6—C5130.5 (2)C36—C35—H35A108.5
N2—C6—C1109.56 (19)C34—C35—H35B108.5
C5—C6—C1120.0 (2)C36—C35—H35B108.5
N2—C7—N1112.1 (2)H35A—C35—H35B107.5
N2—C7—C8125.65 (19)C35—C36—C37110.62 (17)
N1—C7—C8122.23 (18)C35—C36—H36A109.5
C7—C8—C9114.34 (18)C37—C36—H36A109.5
C7—C8—H8A108.7C35—C36—H36B109.5
C9—C8—H8A108.7C37—C36—H36B109.5
C7—C8—H8B108.7H36A—C36—H36B108.1
C9—C8—H8B108.7C38—C37—C36114.32 (19)
H8A—C8—H8B107.6C38—C37—H37A108.7
C8—C9—C10111.25 (19)C36—C37—H37A108.7
C8—C9—H9A109.4C38—C37—H37B108.7
C10—C9—H9A109.4C36—C37—H37B108.7
C8—C9—H9B109.4H37A—C37—H37B107.6
C10—C9—H9B109.4N7—C38—N8113.0 (2)
H9A—C9—H9B108.0N7—C38—C37125.5 (2)
C11—C10—C9114.42 (19)N8—C38—C37121.5 (2)
C11—C10—H10A108.7C44—C39—C40119.9 (3)
C9—C10—H10A108.7C44—C39—N7110.1 (2)
C11—C10—H10B108.7C40—C39—N7130.0 (3)
C9—C10—H10B108.7C41—C40—C39118.0 (3)
H10A—C10—H10B107.6C41—C40—H40121.0
N3—C11—N4113.15 (19)C39—C40—H40121.0
N3—C11—C10125.4 (2)C42—C41—C40121.4 (3)
N4—C11—C10121.4 (2)C42—C41—H41119.3
C13—C12—C17119.7 (2)C40—C41—H41119.3
C13—C12—N3130.3 (2)C41—C42—C43122.2 (3)
C17—C12—N3110.0 (2)C41—C42—H42118.9
C14—C13—C12118.4 (3)C43—C42—H42118.9
C14—C13—H13120.8C42—C43—C44116.4 (3)
C12—C13—H13120.8C42—C43—H43121.8
C13—C14—C15121.1 (3)C44—C43—H43121.8
C13—C14—H14119.4N8—C44—C39105.7 (2)
C15—C14—H14119.4N8—C44—C43132.2 (3)
C16—C15—C14121.7 (3)C39—C44—C43122.1 (3)
C16—C15—H15119.1N8—C45—C46112.3 (2)
C14—C15—H15119.1N8—C45—H45A109.1
C15—C16—C17116.9 (3)C46—C45—H45A109.1
C15—C16—H16121.6N8—C45—H45B109.1
C17—C16—H16121.6C46—C45—H45B109.1
N4—C17—C16132.3 (2)H45A—C45—H45B107.9
N4—C17—C12105.60 (19)C47—C46—C45112.9 (2)
C16—C17—C12122.1 (2)C47—C46—H46A109.0
N4—C18—C19113.9 (2)C45—C46—H46A109.0
N4—C18—H18A108.8C47—C46—H46B109.0
C19—C18—H18A108.8C45—C46—H46B109.0
N4—C18—H18B108.8H46A—C46—H46B107.8
C19—C18—H18B108.8C46—C47—C48113.1 (2)
H18A—C18—H18B107.7C46—C47—H47A109.0
C20—C19—C18114.3 (2)C48—C47—H47A109.0
C20—C19—H19A108.7C46—C47—H47B109.0
C18—C19—H19A108.7C48—C47—H47B109.0
C20—C19—H19B108.7H47A—C47—H47B107.8
C18—C19—H19B108.7C47—C48—C49114.7 (3)
H19A—C19—H19B107.6C47—C48—H48A108.6
C19—C20—C21112.5 (2)C49—C48—H48A108.6
C19—C20—H20A109.1C47—C48—H48B108.6
C21—C20—H20A109.1C49—C48—H48B108.6
C19—C20—H20B109.1H48A—C48—H48B107.6
C21—C20—H20B109.1C48—C49—C50112.5 (3)
H20A—C20—H20B107.8C48—C49—H49A109.1
C22—C21—C20113.7 (2)C50—C49—H49A109.1
C22—C21—H21A108.8C48—C49—H49B109.1
C20—C21—H21A108.8C50—C49—H49B109.1
C22—C21—H21B108.8H49A—C49—H49B107.8
C20—C21—H21B108.8C51—C50—C49115.8 (3)
H21A—C21—H21B107.7C51—C50—H50A108.3
C21—C22—C23113.2 (2)C49—C50—H50A108.3
C21—C22—H22A108.9C51—C50—H50B108.3
C23—C22—H22A108.9C49—C50—H50B108.3
C21—C22—H22B108.9H50A—C50—H50B107.4
C23—C22—H22B108.9C50—C51—C52112.1 (3)
H22A—C22—H22B107.8C50—C51—H51A109.2
C24—C23—C22114.1 (2)C52—C51—H51A109.2
C24—C23—H23A108.7C50—C51—H51B109.2
C22—C23—H23A108.7C52—C51—H51B109.2
C24—C23—H23B108.7H51A—C51—H51B107.9
C22—C23—H23B108.7C53—C52—C51117.8 (3)
H23A—C23—H23B107.6C53—C52—H52A107.9
C23—C24—C25114.1 (2)C51—C52—H52A107.9
C23—C24—H24A108.7C53—C52—H52B107.9
C25—C24—H24A108.7C51—C52—H52B107.9
C23—C24—H24B108.7H52A—C52—H52B107.2
C25—C24—H24B108.7C52—C53—C54113.7 (3)
H24A—C24—H24B107.6C52—C53—H53A108.8
C26—C25—C24113.1 (2)C54—C53—H53A108.8
C26—C25—H25A109.0C52—C53—H53B108.8
C24—C25—H25A109.0C54—C53—H53B108.8
C26—C25—H25B109.0H53A—C53—H53B107.7
C24—C25—H25B109.0C53—C54—H54A109.5
H25A—C25—H25B107.8C53—C54—H54B109.5
C27—C26—C25113.5 (3)H54A—C54—H54B109.5
C27—C26—H26A108.9C53—C54—H54C109.5
C25—C26—H26A108.9H54A—C54—H54C109.5
C27—C26—H26B108.9H54B—C54—H54C109.5
C7—N1—C1—C2179.9 (3)C34—N5—C28—C29179.4 (3)
C7—N1—C1—C60.5 (2)C34—N5—C28—C330.4 (2)
N1—C1—C2—C3179.9 (3)N5—C28—C29—C30178.7 (2)
C6—C1—C2—C30.4 (4)C33—C28—C29—C301.1 (4)
C1—C2—C3—C40.0 (4)C28—C29—C30—C311.0 (4)
C2—C3—C4—C50.2 (5)C29—C30—C31—C320.1 (4)
C3—C4—C5—C60.2 (4)C30—C31—C32—C330.8 (4)
C7—N2—C6—C5179.5 (3)C31—C32—C33—C280.6 (4)
C7—N2—C6—C10.3 (3)C31—C32—C33—N6178.5 (2)
C4—C5—C6—N2179.9 (2)N5—C28—C33—C32179.6 (2)
C4—C5—C6—C10.1 (4)C29—C28—C33—C320.3 (4)
N1—C1—C6—N20.1 (3)N5—C28—C33—N60.2 (3)
C2—C1—C6—N2179.8 (2)C29—C28—C33—N6179.6 (2)
N1—C1—C6—C5179.9 (2)C34—N6—C33—C32179.2 (2)
C2—C1—C6—C50.4 (4)C34—N6—C33—C280.1 (3)
C6—N2—C7—N10.6 (3)C33—N6—C34—N50.3 (3)
C6—N2—C7—C8179.3 (2)C33—N6—C34—C35179.5 (2)
C1—N1—C7—N20.7 (3)C28—N5—C34—N60.5 (3)
C1—N1—C7—C8179.2 (2)C28—N5—C34—C35179.7 (2)
N2—C7—C8—C914.7 (3)N6—C34—C35—C364.1 (3)
N1—C7—C8—C9165.4 (2)N5—C34—C35—C36176.8 (2)
C7—C8—C9—C10176.5 (2)C34—C35—C36—C37178.0 (2)
C8—C9—C10—C11174.6 (2)C35—C36—C37—C38179.7 (2)
C12—N3—C11—N40.2 (3)C39—N7—C38—N80.5 (3)
C12—N3—C11—C10179.8 (2)C39—N7—C38—C37179.9 (2)
C17—N4—C11—N30.0 (3)C44—N8—C38—N70.6 (3)
C18—N4—C11—N3175.0 (2)C45—N8—C38—N7178.4 (2)
C17—N4—C11—C10179.6 (2)C44—N8—C38—C37180.0 (2)
C18—N4—C11—C105.4 (3)C45—N8—C38—C372.2 (4)
C9—C10—C11—N34.2 (3)C36—C37—C38—N73.9 (4)
C9—C10—C11—N4175.4 (2)C36—C37—C38—N8176.8 (2)
C11—N3—C12—C13177.5 (3)C38—N7—C39—C440.3 (3)
C11—N3—C12—C170.4 (3)C38—N7—C39—C40178.3 (3)
C17—C12—C13—C141.1 (4)C44—C39—C40—C411.0 (4)
N3—C12—C13—C14178.8 (2)N7—C39—C40—C41178.9 (3)
C12—C13—C14—C150.1 (4)C39—C40—C41—C420.0 (5)
C13—C14—C15—C160.8 (5)C40—C41—C42—C430.6 (6)
C14—C15—C16—C170.1 (4)C41—C42—C43—C440.2 (5)
C11—N4—C17—C16179.7 (3)C38—N8—C44—C390.3 (3)
C18—N4—C17—C164.7 (4)C45—N8—C44—C39178.3 (2)
C11—N4—C17—C120.2 (2)C38—N8—C44—C43180.0 (3)
C18—N4—C17—C12174.8 (2)C45—N8—C44—C432.1 (5)
C15—C16—C17—N4178.2 (3)C40—C39—C44—N8178.2 (2)
C15—C16—C17—C121.2 (4)N7—C39—C44—N80.1 (3)
C13—C12—C17—N4177.7 (2)C40—C39—C44—C431.4 (4)
N3—C12—C17—N40.4 (3)N7—C39—C44—C43179.7 (2)
C13—C12—C17—C161.8 (4)C42—C43—C44—N8178.7 (3)
N3—C12—C17—C16180.0 (2)C42—C43—C44—C390.9 (4)
C11—N4—C18—C1986.5 (3)C38—N8—C45—C4687.3 (3)
C17—N4—C18—C1999.4 (3)C44—N8—C45—C4690.2 (3)
N4—C18—C19—C2063.6 (3)N8—C45—C46—C47171.8 (2)
C18—C19—C20—C21177.6 (2)C45—C46—C47—C48179.9 (3)
C19—C20—C21—C22176.4 (2)C46—C47—C48—C49176.0 (3)
C20—C21—C22—C23176.9 (3)C47—C48—C49—C50177.3 (3)
C21—C22—C23—C24176.1 (3)C48—C49—C50—C51177.3 (3)
C22—C23—C24—C25177.7 (3)C49—C50—C51—C52179.8 (3)
C23—C24—C25—C26174.3 (3)C50—C51—C52—C53179.2 (3)
C24—C25—C26—C27176.6 (3)C51—C52—C53—C54177.4 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.88 (1)1.96 (1)2.813 (2)162 (2)
N5—H5···N6ii0.88 (1)2.01 (1)2.860 (2)162 (2)
Symmetry codes: (i) x, y+3/2, z+1/2; (ii) x, y+1/2, z1/2.

Experimental details

Crystal data
Chemical formulaC27H36N4
Mr416.60
Crystal system, space groupMonoclinic, P21/c
Temperature (K)293
a, b, c (Å)38.5580 (6), 13.2052 (2), 9.9623 (2)
β (°) 95.339 (1)
V3)5050.46 (15)
Z8
Radiation typeMo Kα
µ (mm1)0.07
Crystal size (mm)0.30 × 0.20 × 0.10
Data collection
DiffractometerBruker APEXII
diffractometer
Absorption correction
No. of measured, independent and
observed [I > 2σ(I)] reflections
38663, 9083, 5547
Rint0.038
(sin θ/λ)max1)0.600
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.056, 0.165, 1.02
No. of reflections9083
No. of parameters567
No. of restraints36
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å3)0.27, 0.20

Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).

Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.88 (1)1.96 (1)2.813 (2)162 (2)
N5—H5···N6ii0.88 (1)2.01 (1)2.860 (2)162 (2)
Symmetry codes: (i) x, y+3/2, z+1/2; (ii) x, y+1/2, z1/2.
 

Acknowledgements

We thank MAScIR, Université Mohammed V-Agdal and the University of Malaya for supporting this study.

References

First citationBarbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.  CrossRef CAS Google Scholar
First citationBruker (2005). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
First citationHu, B., Deng, X.-T., Wang, C.-G. & Wang, X.-Y. (2006). Acta Cryst. E62, m3477–m3478.  Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSun, Y., Liu, X.-H., Zhang, X., Song, H.-B. & Liu, X.-L. (2004). Chin. J. Struct. Chem. 23, 803–807.  CAS Google Scholar
First citationWestrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.  Web of Science CrossRef CAS IUCr Journals Google Scholar

This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890
Follow Acta Cryst. E
Sign up for e-alerts
Follow Acta Cryst. on Twitter
Follow us on facebook
Sign up for RSS feeds