metal-organic compounds
Poly[(aquacalcium)-μ4-pyrazine-2,3-dicarboxylato]
aKey Laboratory of Energy Resources and Chemical Engineering, Ningxia University, Yinchuan 750021, Ningxia, People's Republic of China, and bSchool of Chemistry and Chemical Engineering, Liaocheng University, Liaocheng 252059, Shandong, People's Republic of China
*Correspondence e-mail: yangqf@nxu.edu.cn
The polymeric title compound, [Ca(C6H2N2O4)(H2O)]n, was synthesized from pyrazine-2,3-dicarboxylic acid and calcium dichloride under hydrothermal conditions. The Ca2+ cation is seven-coordinated by five O atoms and one N atom of four pyrazine-2,3-dicarboxylate anions, and one water molecule. The complete deprotonated pyrazine-2,3-dicarboxylate anion adopts a μ4-coordination mode, resulting in the formation of a three-dimensional structure.
Related literature
For transition and lanthanide metal complexes containing the pydc ligand (pydc = pyrazine-2,3-dicarboxylate), see: Chen et al. (2008); Hu et al. (2004); Kitaura et al. (2002); Ma et al. (2006); Sakagami-Yoshida et al. (2000); Yin (2009); Zou et al. (1999).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536811050276/ds2152sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811050276/ds2152Isup2.hkl
A mixture of pyrazine-2,3-dicarboxylic acid (0.17 g, 1.00 mmol) and Calcium dichloride (0.11 g, 1.00 mmol) in distilled water (15 ml) was stirred fully in air, and then sealed in 25 ml Teflon-lined stainless steel container, which was heated at 413 K for 3 days. The Colorless block-shaped product, I, was crystallized upon cooling to 243 K.
All H atoms were positioned geometrically and refined using the riding-model approximation with Uiso(H) = 1.5Ueq(O).
Design and synthesis of metal-organic complexes have attracted much attention due to their intriguing molecular topologies and potentially useful properties, such as adsorption, catalytic, fluorescence, magnetic, and so on. Recently, we have learnt that pyrazine-2,3-dicarboxylic acid is an effective multifunctional bridging ligand to link the M ions with both N and O donor. A large number of transition and lanthanide metal complexes containing the pzdc ligand (pydc = pyrazine-2,3-dicarboxylate) have been reported, see: Zou et al.(1999); Sakagami-Yoshida et al.(2000); Kitaura et al.(2002); Hu et al.(2004); Ma et al.(2006); Chen et al.(2008); Yin et al.(2009). However, alkaline earth metal-containing metal-organic complexes with pydc ligand are less developed. In this paper, we report the synthesis and structure of a new Ca complex with the pzdc ligand.
The aim of the present study was to elucidate the
of the title compound, I. In I, The Ca center is seven-coordinated by five O atoms and one N atom of four deprotonated pyrazine-2,3-dicarboxylato ligands, and one water molecule (Fig. 1). The Ca—O bond lengths are between 2.3111 (14) and 2.5396 (14) Å, the Ca—N bond distance amount to 2.6159 (17) Å, (Table 1). The pyrazine-2,3-dicarboxylic acid is deprotonated completely and acted as µ4– ligand linking four Ca2+ cations. These CaO6N asymmetric units are connected via the anions into a three-dimensional network (Fig. 2).For transition and lanthanide metal complexes containing the pzdc ligand (pydc = pyrazine-2,3-dicarboxylate), see: Chen et al. (2008); Hu et al. (2004); Kitaura et al. (2002); Ma et al. (2006); Sakagami-Yoshida et al. (2000); Yin (2009); Zou et al. (1999).
Data collection: SMART (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Ca(C6H2N2O4)(H2O)] | F(000) = 456 |
Mr = 224.19 | Dx = 1.873 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 2583 reflections |
a = 6.8109 (7) Å | θ = 2.7–28.2° |
b = 12.0469 (13) Å | µ = 0.79 mm−1 |
c = 9.9191 (11) Å | T = 298 K |
β = 102.333 (1)° | Block, colorless |
V = 795.08 (15) Å3 | 0.35 × 0.25 × 0.10 mm |
Z = 4 |
Bruker SMART APEX CCD diffractometer | 1405 independent reflections |
Radiation source: fine-focus sealed tube | 1210 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ω scans | θmax = 25.0°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −8→8 |
Tmin = 0.770, Tmax = 0.926 | k = −12→14 |
3904 measured reflections | l = −10→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.075 | All H-atom parameters refined |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0386P)2 + 0.4192P] where P = (Fo2 + 2Fc2)/3 |
1405 reflections | (Δ/σ)max < 0.001 |
143 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
[Ca(C6H2N2O4)(H2O)] | V = 795.08 (15) Å3 |
Mr = 224.19 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 6.8109 (7) Å | µ = 0.79 mm−1 |
b = 12.0469 (13) Å | T = 298 K |
c = 9.9191 (11) Å | 0.35 × 0.25 × 0.10 mm |
β = 102.333 (1)° |
Bruker SMART APEX CCD diffractometer | 1405 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1210 reflections with I > 2σ(I) |
Tmin = 0.770, Tmax = 0.926 | Rint = 0.026 |
3904 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 0 restraints |
wR(F2) = 0.075 | All H-atom parameters refined |
S = 1.06 | Δρmax = 0.35 e Å−3 |
1405 reflections | Δρmin = −0.34 e Å−3 |
143 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O5 | 0.2040 (3) | −0.20134 (16) | 0.40189 (19) | 0.0390 (5) | |
O2 | 0.2816 (2) | 0.22697 (11) | 0.83932 (14) | 0.0279 (4) | |
O4 | 0.4176 (2) | 0.09317 (12) | 0.37610 (18) | 0.0343 (4) | |
N2 | 0.2587 (3) | 0.37894 (14) | 0.64192 (17) | 0.0218 (4) | |
C4 | 0.2491 (4) | 0.45523 (18) | 0.5424 (2) | 0.0268 (5) | |
Ca1 | 0.23561 (6) | −0.08343 (3) | 0.59754 (4) | 0.01641 (15) | |
O3 | 0.1145 (2) | 0.06496 (11) | 0.41707 (14) | 0.0207 (3) | |
O1 | 0.3116 (2) | 0.08934 (10) | 0.69619 (14) | 0.0256 (4) | |
C6 | 0.2677 (3) | 0.12378 (16) | 0.41813 (19) | 0.0170 (4) | |
C1 | 0.2679 (3) | 0.27200 (15) | 0.60607 (19) | 0.0173 (4) | |
C5 | 0.2868 (3) | 0.18869 (15) | 0.72322 (19) | 0.0181 (4) | |
C2 | 0.2662 (3) | 0.24255 (16) | 0.46930 (19) | 0.0171 (4) | |
N1 | 0.2632 (3) | 0.31989 (14) | 0.37173 (17) | 0.0238 (4) | |
C3 | 0.2526 (4) | 0.42579 (17) | 0.4091 (2) | 0.0284 (5) | |
H2 | 0.242 (3) | 0.526 (2) | 0.564 (2) | 0.024 (6)* | |
H1 | 0.245 (3) | 0.479 (2) | 0.336 (2) | 0.029 (6)* | |
H3 | 0.212 (5) | −0.198 (3) | 0.319 (4) | 0.072 (11)* | |
H4 | 0.207 (5) | −0.260 (3) | 0.426 (4) | 0.073 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O5 | 0.0702 (13) | 0.0292 (10) | 0.0187 (9) | −0.0027 (9) | 0.0122 (8) | −0.0006 (7) |
O2 | 0.0484 (10) | 0.0199 (8) | 0.0161 (7) | 0.0005 (7) | 0.0082 (7) | −0.0016 (6) |
O4 | 0.0211 (9) | 0.0356 (9) | 0.0487 (10) | −0.0014 (7) | 0.0130 (7) | −0.0179 (7) |
N2 | 0.0281 (10) | 0.0171 (8) | 0.0193 (9) | 0.0012 (7) | 0.0034 (7) | −0.0005 (7) |
C4 | 0.0397 (14) | 0.0160 (10) | 0.0243 (11) | 0.0017 (9) | 0.0062 (10) | 0.0023 (9) |
Ca1 | 0.0167 (2) | 0.0162 (2) | 0.0158 (2) | −0.00003 (14) | 0.00219 (16) | −0.00004 (14) |
O3 | 0.0178 (7) | 0.0215 (7) | 0.0225 (7) | −0.0037 (6) | 0.0035 (6) | −0.0001 (6) |
O1 | 0.0408 (9) | 0.0156 (7) | 0.0190 (8) | 0.0019 (6) | 0.0031 (7) | −0.0007 (5) |
C6 | 0.0179 (11) | 0.0208 (10) | 0.0110 (9) | 0.0009 (8) | 0.0002 (8) | 0.0008 (8) |
C1 | 0.0176 (10) | 0.0175 (10) | 0.0164 (10) | 0.0002 (8) | 0.0028 (8) | −0.0012 (8) |
C5 | 0.0192 (10) | 0.0171 (10) | 0.0170 (10) | −0.0008 (8) | 0.0016 (8) | −0.0019 (8) |
C2 | 0.0144 (10) | 0.0202 (10) | 0.0162 (10) | −0.0013 (8) | 0.0023 (8) | 0.0003 (8) |
N1 | 0.0292 (10) | 0.0233 (9) | 0.0184 (8) | −0.0005 (7) | 0.0043 (7) | 0.0016 (7) |
C3 | 0.0422 (14) | 0.0208 (11) | 0.0215 (12) | −0.0003 (9) | 0.0055 (10) | 0.0059 (9) |
O5—Ca1 | 2.3774 (17) | Ca1—O2iv | 2.3779 (14) |
O5—H3 | 0.83 (4) | Ca1—O3 | 2.5396 (14) |
O5—H4 | 0.74 (4) | Ca1—N2iv | 2.6159 (17) |
O2—C5 | 1.248 (2) | Ca1—Ca1iii | 3.9284 (8) |
O2—Ca1i | 2.3779 (14) | Ca1—H4 | 2.70 (4) |
O4—C6 | 1.238 (2) | O3—C6 | 1.260 (2) |
O4—Ca1ii | 2.3233 (15) | O3—Ca1iii | 2.3682 (14) |
N2—C4 | 1.340 (3) | O1—C5 | 1.246 (2) |
N2—C1 | 1.341 (3) | C6—C2 | 1.519 (3) |
N2—Ca1i | 2.6159 (17) | C1—C2 | 1.400 (3) |
C4—C3 | 1.374 (3) | C1—C5 | 1.520 (3) |
C4—H2 | 0.88 (2) | C2—N1 | 1.340 (2) |
Ca1—O1 | 2.3111 (14) | N1—C3 | 1.335 (3) |
Ca1—O4ii | 2.3233 (15) | C3—H1 | 0.96 (2) |
Ca1—O3iii | 2.3682 (14) | ||
Ca1—O5—H3 | 139 (2) | O3iii—Ca1—Ca1iii | 38.35 (3) |
Ca1—O5—H4 | 108 (3) | O5—Ca1—Ca1iii | 88.95 (5) |
H3—O5—H4 | 112 (3) | O2iv—Ca1—Ca1iii | 122.70 (4) |
C5—O2—Ca1i | 127.64 (12) | O3—Ca1—Ca1iii | 35.36 (3) |
C6—O4—Ca1ii | 150.28 (14) | N2iv—Ca1—Ca1iii | 114.42 (4) |
C4—N2—C1 | 117.46 (18) | O1—Ca1—H4 | 162.6 (8) |
C4—N2—Ca1i | 126.65 (14) | O4ii—Ca1—H4 | 88.1 (7) |
C1—N2—Ca1i | 115.89 (12) | O3iii—Ca1—H4 | 95.7 (7) |
N2—C4—C3 | 121.6 (2) | O5—Ca1—H4 | 15.2 (8) |
N2—C4—H2 | 118.6 (14) | O2iv—Ca1—H4 | 53.8 (8) |
C3—C4—H2 | 119.8 (14) | O3—Ca1—H4 | 98.1 (8) |
O1—Ca1—O4ii | 82.39 (5) | N2iv—Ca1—H4 | 117.9 (8) |
O1—Ca1—O3iii | 94.17 (5) | Ca1iii—Ca1—H4 | 98.7 (8) |
O4ii—Ca1—O3iii | 176.20 (5) | C6—O3—Ca1iii | 140.29 (13) |
O1—Ca1—O5 | 148.96 (6) | C6—O3—Ca1 | 104.26 (11) |
O4ii—Ca1—O5 | 88.53 (7) | Ca1iii—O3—Ca1 | 106.29 (5) |
O3iii—Ca1—O5 | 95.26 (6) | C5—O1—Ca1 | 158.12 (14) |
O1—Ca1—O2iv | 140.60 (5) | O4—C6—O3 | 124.80 (18) |
O4ii—Ca1—O2iv | 91.60 (6) | O4—C6—C2 | 117.25 (17) |
O3iii—Ca1—O2iv | 90.05 (5) | O3—C6—C2 | 117.90 (16) |
O5—Ca1—O2iv | 68.91 (6) | N2—C1—C2 | 120.60 (17) |
O1—Ca1—O3 | 70.98 (5) | N2—C1—C5 | 115.63 (16) |
O4ii—Ca1—O3 | 106.51 (5) | C2—C1—C5 | 123.74 (17) |
O3iii—Ca1—O3 | 73.71 (5) | O1—C5—O2 | 125.83 (18) |
O5—Ca1—O3 | 83.45 (6) | O1—C5—C1 | 117.58 (17) |
O2iv—Ca1—O3 | 146.61 (5) | O2—C5—C1 | 116.55 (16) |
O1—Ca1—N2iv | 77.47 (5) | N1—C2—C1 | 121.28 (18) |
O4ii—Ca1—N2iv | 94.59 (6) | N1—C2—C6 | 114.43 (16) |
O3iii—Ca1—N2iv | 83.05 (5) | C1—C2—C6 | 124.29 (17) |
O5—Ca1—N2iv | 133.04 (6) | C3—N1—C2 | 117.23 (17) |
O2iv—Ca1—N2iv | 64.18 (5) | N1—C3—C4 | 121.8 (2) |
O3—Ca1—N2iv | 138.80 (5) | N1—C3—H1 | 115.3 (14) |
O1—Ca1—Ca1iii | 80.40 (4) | C4—C3—H1 | 122.9 (14) |
O4ii—Ca1—Ca1iii | 141.75 (5) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+3/2; (ii) −x+1, −y, −z+1; (iii) −x, −y, −z+1; (iv) −x+1/2, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | [Ca(C6H2N2O4)(H2O)] |
Mr | 224.19 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 6.8109 (7), 12.0469 (13), 9.9191 (11) |
β (°) | 102.333 (1) |
V (Å3) | 795.08 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.79 |
Crystal size (mm) | 0.35 × 0.25 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.770, 0.926 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3904, 1405, 1210 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.075, 1.06 |
No. of reflections | 1405 |
No. of parameters | 143 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.35, −0.34 |
Computer programs: SMART (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Acknowledgements
This work was supported by the Scientific Research Foundation of Ningxia University (No. (E)-nzdr09–5), the Natural Science Foundation of Ningxia Hui Autonomous Region (No. NZ1150) and the Special Program for Key Basic Research of the Ministry of Science and Technology, China (No. 2010CB534916).
References
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Design and synthesis of metal-organic complexes have attracted much attention due to their intriguing molecular topologies and potentially useful properties, such as adsorption, catalytic, fluorescence, magnetic, and so on. Recently, we have learnt that pyrazine-2,3-dicarboxylic acid is an effective multifunctional bridging ligand to link the M ions with both N and O donor. A large number of transition and lanthanide metal complexes containing the pzdc ligand (pydc = pyrazine-2,3-dicarboxylate) have been reported, see: Zou et al.(1999); Sakagami-Yoshida et al.(2000); Kitaura et al.(2002); Hu et al.(2004); Ma et al.(2006); Chen et al.(2008); Yin et al.(2009). However, alkaline earth metal-containing metal-organic complexes with pydc ligand are less developed. In this paper, we report the synthesis and structure of a new Ca complex with the pzdc ligand.
The aim of the present study was to elucidate the crystal structure of the title compound, I. In I, The Ca center is seven-coordinated by five O atoms and one N atom of four deprotonated pyrazine-2,3-dicarboxylato ligands, and one water molecule (Fig. 1). The Ca—O bond lengths are between 2.3111 (14) and 2.5396 (14) Å, the Ca—N bond distance amount to 2.6159 (17) Å, (Table 1). The pyrazine-2,3-dicarboxylic acid is deprotonated completely and acted as µ4– ligand linking four Ca2+ cations. These CaO6N asymmetric units are connected via the anions into a three-dimensional network (Fig. 2).