organic compounds
Glutaric acid–2-(pyridin-4-yl)-1H-benzimidazole (1/1)
aNortheast Dianli University, Jilin 132012, People's Republic of China
*Correspondence e-mail: songzhulin@hotmail.com
The 12H9N3·C5H8O4, N—H⋯O and O—H⋯N hydrogen bonds link the components. There are also π–π stacking interactions between the imidazole rings, between the imidazole and pyridine rings and between the pyridine and benzene rings [centroid–centroid distances = 3.643 (2), 3.573 (2) and 3.740 (1)Å, respectively].
of the title CRelated literature
For background to hydrogen bonds, see: Moorthy et al. (2002); Muthuraman et al. (2000); Nangia & Desiraju (1999); Bhattacharjya et al. (2004). For related structures, see: Bei et al. (2000); Ozbey et al. (1998).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell CAD-4 Software; data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
https://doi.org/10.1107/S1600536811049695/fj2466sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811049695/fj2466Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811049695/fj2466Isup3.cml
The title compound was obtained by 2-Pyridin-4-yl-1H-benzoimidazole (0.020 g, 0.1 mmol) and glutaric acid (0.013 g, 0.1 mmol) dissolved in 30 ml solution mixed with ethanol and water by 2:1(V/V) was heated to refluxed for 6 h and cooled to the room temperature. Single crystals suitable for x-ray measurements were obtained by recrystallization at room temperature.
The positions of H atoms, H1,H2, were found in a difference Fourier map. All the other H atoms were fixed geometrically and allowed to ride on their attached atoms, with C—H distances=0.93–0.97 Å, N—H distance=0.86Å and with Uiso=1.2–1.5Ueq.
The strong (O—H···O) and weak (C—H···O) hydrogen bonds, the halogen bond (C—X···O) and the weak C—H···π interaction, have been well characterized and exploited in the design of molecular assemblies (Moorthy et al., 2002; Muthuraman et al., 2000; Nangia and Desiraju, 1999; Bhattacharjya et al., 2004). Our interest in benzimidazole stems from their biological activity (Bei et al., 2000; Ozbey et al., 1998). In this paper, we sysnthesized the title compound and report its structure.
Scheme I
The compound consists of 2-(pyridin-4-yl)-1H-benzimidazole and glutaric acid. In the title compound, the dihedral angle between the imidazole and the benzene was 1.40 (2)°, while the benzimidazole and the pyridine was 5.25 (1)°. It results that the all atoms in the 2-(pyridin-4-yl)-1H-benzimidazole are not coplanar strictly. In the part of glutaric acid, four atoms O1, O2, C13, C14 are lying in a same plane (p1) with the maximum diviation of 0.002° for C13, while other four atoms O3, O4, C16, C17 lying in another plane (p2) with the maximum diviation of 0.001% for O3. The dihedral angle between p1 and p2 is 10.50 (2)°.
In the lattice, there exist some kinds of hydrogen bonds. It forms one-dimension stairway structure between 2-(pyridin-4-yl)-1H-benzimidazole and glutaric acid via N—H···O, O—H···N hydrogen bonds (figure 2a and 2 b). Two adjacent strairway chains formed two dimension structure via the C—H···O intermolecular interaction.
In addition, there exists some π–π interactions between the rings [Cg1···Cg1=3.643 (2), Cg1···Cg2= 3.573 (2) and Cg2···Cg3=3.740 (1), respectively (Cg1, Cg2, Cg3 refer to the centroid of imidazole N1, C1, C6, N2, C7; the pyridine N3, C8, C9, C10, C11, C12 and the phenyl ring C1, C2, C3, C4, C5, C6, respectively)]. The π–π interaction, as well as the inter- and intra- hydrogen bond stabilized the crystal structure.
For background to hydrogen bonds, see: Moorthy et al. (2002); Muthuraman et al. (2000); Nangia & Desiraju (1999); Bhattacharjya et al. (2004). For related structures, see: Bei et al. (2000); Ozbey et al. (1998).
Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell
CAD-4 Software (Enraf–Nonius, 1989); data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: WinGX (Farrugia, 1999).C12H9N3·C5H8O4 | Z = 2 |
Mr = 327.34 | F(000) = 344 |
Triclinic, P1 | Dx = 1.390 Mg m−3 |
Hall symbol: -p 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.4384 (15) Å | Cell parameters from 25 reflections |
b = 8.9911 (18) Å | θ = 4–14° |
c = 11.868 (2) Å | µ = 0.10 mm−1 |
α = 86.67 (3)° | T = 293 K |
β = 81.66 (3)° | Block, colorless |
γ = 85.57 (3)° | 0.20 × 0.17 × 0.15 mm |
V = 782.1 (3) Å3 |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.024 |
Radiation source: fine-focus sealed tube | θmax = 25.0°, θmin = 3.1° |
Graphite monochromator | h = −7→7 |
ω scans | k = −10→10 |
6041 measured reflections | l = −14→13 |
2664 independent reflections | 3 standard reflections every 100 reflections |
1657 reflections with I > 2σ(I) | intensity decay: none |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.040 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.149 | w = 1/[σ2(Fo2) + (0.0825P)2 + 0.020P] where P = (Fo2 + 2Fc2)/3 |
S = 1.11 | (Δ/σ)max < 0.001 |
2664 reflections | Δρmax = 0.35 e Å−3 |
226 parameters | Δρmin = −0.32 e Å−3 |
1 restraint | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.018 (5) |
C12H9N3·C5H8O4 | γ = 85.57 (3)° |
Mr = 327.34 | V = 782.1 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.4384 (15) Å | Mo Kα radiation |
b = 8.9911 (18) Å | µ = 0.10 mm−1 |
c = 11.868 (2) Å | T = 293 K |
α = 86.67 (3)° | 0.20 × 0.17 × 0.15 mm |
β = 81.66 (3)° |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.024 |
6041 measured reflections | 3 standard reflections every 100 reflections |
2664 independent reflections | intensity decay: none |
1657 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.040 | 1 restraint |
wR(F2) = 0.149 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.11 | Δρmax = 0.35 e Å−3 |
2664 reflections | Δρmin = −0.32 e Å−3 |
226 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.2659 (2) | 0.5349 (2) | 0.58023 (17) | 0.0435 (5) | |
H1A | 0.2940 | 0.6038 | 0.6206 | 0.052* | |
N2 | 0.2164 (2) | 0.4197 (2) | 0.42719 (17) | 0.0432 (5) | |
N3 | 0.4250 (3) | 0.9193 (2) | 0.24990 (19) | 0.0526 (6) | |
C1 | 0.1814 (3) | 0.3243 (2) | 0.5230 (2) | 0.0403 (6) | |
C2 | 0.1261 (3) | 0.1787 (3) | 0.5328 (2) | 0.0478 (6) | |
H2B | 0.1037 | 0.1309 | 0.4693 | 0.057* | |
C3 | 0.1057 (3) | 0.1083 (3) | 0.6392 (2) | 0.0515 (7) | |
H3B | 0.0690 | 0.0112 | 0.6477 | 0.062* | |
C4 | 0.1387 (3) | 0.1791 (3) | 0.7345 (2) | 0.0540 (7) | |
H4A | 0.1251 | 0.1275 | 0.8051 | 0.065* | |
C5 | 0.1912 (3) | 0.3235 (3) | 0.7273 (2) | 0.0508 (7) | |
H5A | 0.2117 | 0.3707 | 0.7915 | 0.061* | |
C6 | 0.2117 (3) | 0.3952 (3) | 0.6200 (2) | 0.0408 (6) | |
C7 | 0.2664 (3) | 0.5429 (2) | 0.4655 (2) | 0.0405 (6) | |
C8 | 0.3189 (3) | 0.6750 (3) | 0.3922 (2) | 0.0416 (6) | |
C9 | 0.3303 (3) | 0.6703 (3) | 0.2746 (2) | 0.0502 (7) | |
H9A | 0.3025 | 0.5851 | 0.2416 | 0.060* | |
C10 | 0.3835 (3) | 0.7942 (3) | 0.2073 (2) | 0.0563 (7) | |
H10A | 0.3908 | 0.7903 | 0.1286 | 0.068* | |
C11 | 0.4129 (3) | 0.9229 (3) | 0.3626 (2) | 0.0520 (7) | |
H11A | 0.4408 | 1.0097 | 0.3934 | 0.062* | |
C12 | 0.3614 (3) | 0.8050 (3) | 0.4361 (2) | 0.0488 (6) | |
H12A | 0.3553 | 0.8125 | 0.5144 | 0.059* | |
O1 | −0.3978 (3) | 0.1206 (2) | 0.12019 (17) | 0.0654 (6) | |
O2 | −0.3751 (2) | 0.2383 (2) | 0.27704 (16) | 0.0599 (5) | |
O3 | 0.2390 (4) | 0.3965 (3) | 0.1101 (2) | 0.1041 (9) | |
O4 | 0.1264 (3) | 0.2629 (2) | 0.26029 (18) | 0.0776 (7) | |
C13 | −0.3421 (3) | 0.2273 (3) | 0.1748 (2) | 0.0490 (6) | |
C14 | −0.2312 (4) | 0.3340 (3) | 0.0967 (2) | 0.0618 (8) | |
H14A | −0.1852 | 0.4040 | 0.1429 | 0.074* | |
H14B | −0.3110 | 0.3908 | 0.0497 | 0.074* | |
C15 | −0.0728 (4) | 0.2637 (3) | 0.0197 (2) | 0.0597 (7) | |
H15A | −0.0195 | 0.3404 | −0.0327 | 0.072* | |
H15B | −0.1176 | 0.1914 | −0.0252 | 0.072* | |
C16 | 0.0758 (4) | 0.1854 (3) | 0.0833 (2) | 0.0619 (8) | |
H16A | 0.0244 | 0.1063 | 0.1340 | 0.074* | |
H16B | 0.1714 | 0.1405 | 0.0288 | 0.074* | |
C17 | 0.1557 (4) | 0.2930 (3) | 0.1513 (3) | 0.0601 (8) | |
H1 | 0.173 (5) | 0.338 (4) | 0.308 (3) | 0.123 (13)* | |
H2 | −0.456 (4) | 0.058 (4) | 0.167 (3) | 0.133 (15)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0502 (11) | 0.0392 (11) | 0.0437 (13) | −0.0103 (8) | −0.0095 (9) | −0.0083 (9) |
N2 | 0.0464 (11) | 0.0400 (12) | 0.0465 (13) | −0.0084 (9) | −0.0127 (9) | −0.0063 (10) |
N3 | 0.0573 (12) | 0.0472 (13) | 0.0568 (15) | −0.0157 (10) | −0.0133 (10) | −0.0024 (11) |
C1 | 0.0380 (12) | 0.0384 (13) | 0.0466 (15) | −0.0042 (9) | −0.0102 (10) | −0.0064 (11) |
C2 | 0.0524 (14) | 0.0402 (14) | 0.0547 (17) | −0.0087 (11) | −0.0144 (11) | −0.0120 (12) |
C3 | 0.0589 (15) | 0.0391 (14) | 0.0592 (18) | −0.0121 (11) | −0.0122 (12) | −0.0039 (13) |
C4 | 0.0646 (16) | 0.0458 (15) | 0.0515 (17) | −0.0079 (12) | −0.0054 (13) | −0.0029 (13) |
C5 | 0.0653 (16) | 0.0461 (15) | 0.0427 (16) | −0.0088 (12) | −0.0079 (12) | −0.0089 (12) |
C6 | 0.0403 (12) | 0.0364 (13) | 0.0472 (15) | −0.0047 (9) | −0.0075 (10) | −0.0084 (11) |
C7 | 0.0375 (12) | 0.0408 (13) | 0.0454 (15) | −0.0066 (10) | −0.0098 (10) | −0.0061 (11) |
C8 | 0.0387 (12) | 0.0406 (13) | 0.0475 (15) | −0.0064 (9) | −0.0089 (10) | −0.0071 (11) |
C9 | 0.0582 (15) | 0.0474 (15) | 0.0499 (16) | −0.0168 (11) | −0.0160 (12) | −0.0054 (12) |
C10 | 0.0678 (17) | 0.0572 (17) | 0.0500 (17) | −0.0221 (13) | −0.0207 (13) | 0.0012 (13) |
C11 | 0.0566 (15) | 0.0448 (15) | 0.0569 (18) | −0.0151 (11) | −0.0064 (12) | −0.0102 (13) |
C12 | 0.0523 (14) | 0.0485 (15) | 0.0470 (16) | −0.0128 (11) | −0.0049 (11) | −0.0082 (12) |
O1 | 0.0996 (15) | 0.0540 (12) | 0.0469 (12) | −0.0322 (11) | −0.0076 (10) | −0.0088 (10) |
O2 | 0.0784 (12) | 0.0601 (12) | 0.0441 (12) | −0.0230 (9) | −0.0063 (9) | −0.0081 (9) |
O3 | 0.170 (2) | 0.0867 (17) | 0.0689 (16) | −0.0736 (17) | −0.0346 (15) | 0.0149 (13) |
O4 | 0.1193 (18) | 0.0732 (15) | 0.0487 (14) | −0.0464 (13) | −0.0185 (12) | −0.0038 (11) |
C13 | 0.0623 (15) | 0.0415 (14) | 0.0453 (17) | −0.0102 (11) | −0.0097 (12) | −0.0044 (12) |
C14 | 0.090 (2) | 0.0469 (16) | 0.0497 (17) | −0.0231 (14) | −0.0054 (15) | −0.0005 (13) |
C15 | 0.0806 (18) | 0.0623 (18) | 0.0390 (16) | −0.0253 (14) | −0.0061 (13) | −0.0068 (13) |
C16 | 0.088 (2) | 0.0522 (17) | 0.0492 (18) | −0.0181 (14) | −0.0124 (14) | −0.0107 (14) |
C17 | 0.0833 (19) | 0.0498 (17) | 0.0520 (19) | −0.0205 (14) | −0.0195 (14) | 0.0043 (14) |
N1—C7 | 1.359 (3) | C9—H9A | 0.9300 |
N1—C6 | 1.385 (3) | C10—H10A | 0.9300 |
N1—H1A | 0.8600 | C11—C12 | 1.375 (3) |
N2—C7 | 1.320 (3) | C11—H11A | 0.9300 |
N2—C1 | 1.390 (3) | C12—H12A | 0.9300 |
N3—C11 | 1.330 (3) | O1—C13 | 1.313 (3) |
N3—C10 | 1.334 (3) | O1—H2 | 0.866 (10) |
C1—C2 | 1.396 (3) | O2—C13 | 1.211 (3) |
C1—C6 | 1.402 (3) | O3—C17 | 1.199 (3) |
C2—C3 | 1.373 (3) | O4—C17 | 1.296 (3) |
C2—H2B | 0.9300 | O4—H1 | 1.02 (4) |
C3—C4 | 1.390 (4) | C13—C14 | 1.503 (3) |
C3—H3B | 0.9300 | C14—C15 | 1.504 (4) |
C4—C5 | 1.379 (4) | C14—H14A | 0.9700 |
C4—H4A | 0.9300 | C14—H14B | 0.9700 |
C5—C6 | 1.387 (4) | C15—C16 | 1.532 (4) |
C5—H5A | 0.9300 | C15—H15A | 0.9700 |
C7—C8 | 1.475 (3) | C15—H15B | 0.9700 |
C8—C12 | 1.383 (3) | C16—C17 | 1.503 (4) |
C8—C9 | 1.389 (4) | C16—H16A | 0.9700 |
C9—C10 | 1.381 (3) | C16—H16B | 0.9700 |
C7—N1—C6 | 107.18 (19) | C9—C10—H10A | 118.5 |
C7—N1—H1A | 126.4 | N3—C11—C12 | 123.4 (2) |
C6—N1—H1A | 126.4 | N3—C11—H11A | 118.3 |
C7—N2—C1 | 105.23 (19) | C12—C11—H11A | 118.3 |
C11—N3—C10 | 117.5 (2) | C11—C12—C8 | 119.2 (2) |
N2—C1—C2 | 130.2 (2) | C11—C12—H12A | 120.4 |
N2—C1—C6 | 109.62 (19) | C8—C12—H12A | 120.4 |
C2—C1—C6 | 120.2 (2) | C13—O1—H2 | 111 (3) |
C3—C2—C1 | 117.8 (2) | C17—O4—H1 | 114 (2) |
C3—C2—H2B | 121.1 | O2—C13—O1 | 123.9 (2) |
C1—C2—H2B | 121.1 | O2—C13—C14 | 123.5 (2) |
C2—C3—C4 | 121.4 (2) | O1—C13—C14 | 112.6 (2) |
C2—C3—H3B | 119.3 | C13—C14—C15 | 115.5 (2) |
C4—C3—H3B | 119.3 | C13—C14—H14A | 108.4 |
C5—C4—C3 | 121.9 (2) | C15—C14—H14A | 108.4 |
C5—C4—H4A | 119.0 | C13—C14—H14B | 108.4 |
C3—C4—H4A | 119.0 | C15—C14—H14B | 108.4 |
C4—C5—C6 | 116.9 (2) | H14A—C14—H14B | 107.5 |
C4—C5—H5A | 121.6 | C14—C15—C16 | 113.8 (2) |
C6—C5—H5A | 121.6 | C14—C15—H15A | 108.8 |
N1—C6—C5 | 133.1 (2) | C16—C15—H15A | 108.8 |
N1—C6—C1 | 105.2 (2) | C14—C15—H15B | 108.8 |
C5—C6—C1 | 121.7 (2) | C16—C15—H15B | 108.8 |
N2—C7—N1 | 112.81 (19) | H15A—C15—H15B | 107.7 |
N2—C7—C8 | 124.0 (2) | C17—C16—C15 | 111.4 (2) |
N1—C7—C8 | 123.2 (2) | C17—C16—H16A | 109.3 |
C12—C8—C9 | 117.8 (2) | C15—C16—H16A | 109.3 |
C12—C8—C7 | 122.3 (2) | C17—C16—H16B | 109.3 |
C9—C8—C7 | 119.9 (2) | C15—C16—H16B | 109.3 |
C10—C9—C8 | 118.9 (2) | H16A—C16—H16B | 108.0 |
C10—C9—H9A | 120.5 | O3—C17—O4 | 122.6 (3) |
C8—C9—H9A | 120.5 | O3—C17—C16 | 124.1 (3) |
N3—C10—C9 | 123.1 (3) | O4—C17—C16 | 113.3 (2) |
N3—C10—H10A | 118.5 | ||
C7—N2—C1—C2 | −179.2 (2) | N2—C7—C8—C12 | 176.6 (2) |
C7—N2—C1—C6 | 0.2 (2) | N1—C7—C8—C12 | −4.0 (3) |
N2—C1—C2—C3 | 178.4 (2) | N2—C7—C8—C9 | −4.7 (3) |
C6—C1—C2—C3 | −1.0 (3) | N1—C7—C8—C9 | 174.8 (2) |
C1—C2—C3—C4 | 0.0 (4) | C12—C8—C9—C10 | 0.2 (4) |
C2—C3—C4—C5 | 0.8 (4) | C7—C8—C9—C10 | −178.6 (2) |
C3—C4—C5—C6 | −0.7 (4) | C11—N3—C10—C9 | −0.3 (4) |
C7—N1—C6—C5 | 178.0 (2) | C8—C9—C10—N3 | 0.0 (4) |
C7—N1—C6—C1 | 0.0 (2) | C10—N3—C11—C12 | 0.4 (4) |
C4—C5—C6—N1 | −178.0 (2) | N3—C11—C12—C8 | −0.2 (4) |
C4—C5—C6—C1 | −0.2 (3) | C9—C8—C12—C11 | −0.1 (3) |
N2—C1—C6—N1 | −0.1 (2) | C7—C8—C12—C11 | 178.7 (2) |
C2—C1—C6—N1 | 179.4 (2) | O2—C13—C14—C15 | 126.6 (3) |
N2—C1—C6—C5 | −178.4 (2) | O1—C13—C14—C15 | −52.9 (3) |
C2—C1—C6—C5 | 1.1 (3) | C13—C14—C15—C16 | −64.9 (3) |
C1—N2—C7—N1 | −0.2 (2) | C14—C15—C16—C17 | −60.6 (3) |
C1—N2—C7—C8 | 179.28 (19) | C15—C16—C17—O3 | −64.2 (4) |
C6—N1—C7—N2 | 0.2 (2) | C15—C16—C17—O4 | 116.1 (3) |
C6—N1—C7—C8 | −179.33 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 0.86 | 2.10 | 2.957 (3) | 176 |
O1—H2···N3ii | 0.87 (1) | 1.75 (1) | 2.615 (3) | 173 (4) |
O4—H1···N2 | 1.02 (4) | 1.71 (4) | 2.686 (3) | 158 (3) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x−1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C12H9N3·C5H8O4 |
Mr | 327.34 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.4384 (15), 8.9911 (18), 11.868 (2) |
α, β, γ (°) | 86.67 (3), 81.66 (3), 85.57 (3) |
V (Å3) | 782.1 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.20 × 0.17 × 0.15 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6041, 2664, 1657 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.149, 1.11 |
No. of reflections | 2664 |
No. of parameters | 226 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.32 |
Computer programs: CAD-4 Software (Enraf–Nonius, 1989), NRCVAX (Gabe et al., 1989), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 0.86 | 2.10 | 2.957 (3) | 176.3 |
O1—H2···N3ii | 0.866 (10) | 1.752 (12) | 2.615 (3) | 173 (4) |
O4—H1···N2 | 1.02 (4) | 1.71 (4) | 2.686 (3) | 158 (3) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x−1, y−1, z. |
Acknowledgements
The authors would like to thank the National Natural Science Foundation of China (51003010) and the Natural Science Foundation of Jilin Province (201115178).
References
Bei, F., Jian, F., Yang, X., Lu, L., Wang, X., Shanmuga Sundara Raj, S. & Fun, H.-K. (2000). Acta Cryst. C56, 718–719. CSD CrossRef CAS IUCr Journals Google Scholar
Bhattacharjya, G., Savithaa, G. & Ramanathan, G. (2004). CrystEngComm, 6(40), 233–235. Web of Science CSD CrossRef Google Scholar
Enraf–Nonius (1989). CAD-4 Software. Enraf–Nonius, Delft, The Netherlands. Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Gabe, E. J., Le Page, Y., Charland, J.-P., Lee, F. L. & White, P. S. (1989). J. Appl. Cryst. 22, 384–387. CrossRef CAS Web of Science IUCr Journals Google Scholar
Moorthy, J. N., Natarajan, R., Mal, P. & Venugopalan, P. (2002). J. Am. Chem. Soc. 124, 6530–6531. Web of Science CSD CrossRef PubMed CAS Google Scholar
Muthuraman, M., Fur, Y. L., Bagiur-Beucher, M., Masse, R., Nicoud, J.-F., George, S., Nangia, A. & Desiraju, G. R. (2000). J. Solid State Chem. 152, 221–228. Web of Science CSD CrossRef CAS Google Scholar
Nangia, A. & Desiraju, G. R. (1999). J. Mol. Struct. 474, 65–79. Web of Science CrossRef CAS Google Scholar
Ozbey, S., Ide, S. & Kendi, E. (1998). J. Mol. Struct. 442, 23–30. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The strong (O—H···O) and weak (C—H···O) hydrogen bonds, the halogen bond (C—X···O) and the weak C—H···π interaction, have been well characterized and exploited in the design of molecular assemblies (Moorthy et al., 2002; Muthuraman et al., 2000; Nangia and Desiraju, 1999; Bhattacharjya et al., 2004). Our interest in benzimidazole stems from their biological activity (Bei et al., 2000; Ozbey et al., 1998). In this paper, we sysnthesized the title compound and report its structure.
Scheme I
The compound consists of 2-(pyridin-4-yl)-1H-benzimidazole and glutaric acid. In the title compound, the dihedral angle between the imidazole and the benzene was 1.40 (2)°, while the benzimidazole and the pyridine was 5.25 (1)°. It results that the all atoms in the 2-(pyridin-4-yl)-1H-benzimidazole are not coplanar strictly. In the part of glutaric acid, four atoms O1, O2, C13, C14 are lying in a same plane (p1) with the maximum diviation of 0.002° for C13, while other four atoms O3, O4, C16, C17 lying in another plane (p2) with the maximum diviation of 0.001% for O3. The dihedral angle between p1 and p2 is 10.50 (2)°.
In the lattice, there exist some kinds of hydrogen bonds. It forms one-dimension stairway structure between 2-(pyridin-4-yl)-1H-benzimidazole and glutaric acid via N—H···O, O—H···N hydrogen bonds (figure 2a and 2 b). Two adjacent strairway chains formed two dimension structure via the C—H···O intermolecular interaction.
In addition, there exists some π–π interactions between the rings [Cg1···Cg1=3.643 (2), Cg1···Cg2= 3.573 (2) and Cg2···Cg3=3.740 (1), respectively (Cg1, Cg2, Cg3 refer to the centroid of imidazole N1, C1, C6, N2, C7; the pyridine N3, C8, C9, C10, C11, C12 and the phenyl ring C1, C2, C3, C4, C5, C6, respectively)]. The π–π interaction, as well as the inter- and intra- hydrogen bond stabilized the crystal structure.