metal-organic compounds
Diaquabis(5-carboxy-2-propyl-1H-imidazole-4-carboxylato-κ2N3,O4)cadmium N,N-dimethylformamide disolvate
aCollege of Food Science and Technology, Guangdong Ocean University, Zhanjiang 524088, People's Republic of China, bSchool of Enviroment Science and Engineering, Donghua University, Shanghai 200051, People's Republic of China, and cCollege of Science, Guangdong Ocean University, Zhanjiang 524088, People's Republic of China
*Correspondence e-mail: songwd60@163.com
In the title complex, [Cd(C8H9N2O4)2(H2O)2]·2C3H7NO, the six-coordinate CdII ion is in a slightly distorted octahedral environment, defined by two O atoms from two coordinated water molecules and two carboxylate O atoms and two N atoms from two N,O-bidentate 5-carboxy-2-propyl-1H-imidazole-4-carboxylate ligands. In the crystal, complex molecules and dimethylformamide solvent molecules are linked by O—H⋯O and N—H⋯O hydrogen bonds into a two-dimensional supramolecular structure. The propyl groups of the ligands are disordered over two conformations with refined occupancies of 0.680 (7) and 0.320 (7).
Related literature
For our past work based on the H3PIDC (2-propyl-imidazol-4,5-dicarboxylic acid) ligand, see: Fan et al. (2010); Li, Song, Miao, Tong et al. (2011); Li, Miao et al. (2010); Li, Yan et al. (2010); Song et al. (2010); He et al. (2010); Yan et al. (2010). For our past work based on the H3EIDC (2-ethyl-1H-imidazol-4,5-dicarboxylic acid) ligand, see: Li, Ma et al. (2011); Li, Song, Miao, Hu et al. (2011).
Experimental
Crystal data
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536811050264/pk2369sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811050264/pk2369Isup2.hkl
A mixture of Cd(CH3COO)2 (0.2 mmol, 0.046 g) and 2-propyl-1H-imidazole-4,5-dicarboxylic acid (0.2 mmol, 0.39 g) in 15 ml DMF was sealed in an autoclave equipped with a Teflon liner (25 ml) and then heated at 413 K for 3 days. Crystals of the title compound were obtained by slow evaporation of the solvent at room temperature.
H atoms of the water molecule were located in a difference Fourier map and refined subject to O—H distance restraints of 0.82 (1) Å, and Uiso(H) = 1.5 Ueq. The H···H distances within the water molecules were restraint to 1.30 (1) Å. Carboxyl H atoms were located in a difference map but were refined as riding on the parent O atoms with O—H = 0.82 Å and Uiso(H) = 1.5 Ueq(O). Carbon and nitrogen bound H atoms were placed at calculated positions and were treated as riding on the parent C or N atoms with C—H = 0.96 (methyl), 0.97 (methylene) and N—H = 0.86 Å, Uiso(H) = 1.2 or 1.5 Ueq(C, N). The propyl groups of H2PIDC- are split over two sites with refined occupancies of 0.679 (7):0.321 (7).
In recent years, structures containing metals and N-heterocyclic
have drawn increasing attention due to their fascinating structures and potential applications in many fields. For instance, N-heterocyclic H3IDC (imidazole-4,5-dicarboxylic acid) which can be deprotonated to form H2IDC-, HIDC2- and IDC3- anions under various pH conditions, have been broadly used to obtain a variety of metal-organic frameworks with novel structures and exceptional properties. In our previous research, efforts have been focused on the design and synthesis of interesting metal organic complexes with derivatives of H3IDC, such as H3PIDC (2-propyl-imidazole-4,5-dicarboxylic acid) (Fan et al., 2010; Li, Miao et al., 2010; Li, Yan et al., 2010; Li, Song, Miao, Tong et al., 2011; He et al., 2010; Song et al., 2010; Yan et al., 2010) and H3EIDC (2-ethyl-1H-imidazole-4,5-dicarboxylic acid) (Li, Song, Miao, Hu et al., 2011; Li, Ma et al., 2011). To continue our studies, we report the synthesis and structure of a new Cd(II) complex obtained from the H3PIDC ligand and cadmiun nitrate under hydrothermal conditions.As shown in the Fig. 1, the title complex consists of one CdII ion, two mono-deprotonated H2PIDC ligands, two coordinated water molecules and two dimethylformamide solvent molecules. The CdII atom is six-coordinate in a slightly distorted octahedral geometry, connected with two N,O-bidentate ligands [Cd—O = 2.321 (5) Å and Cd—N = 2.262 (4) Å] and two coordinated water molecules [Cd—O = 2.356 (5) Å]. It is noted that the two imidazole rings are nearly coplanar. In the
the complex molecules and dimethylformamide solvent molecules are connected via hydrogen bonds (Table 1) into a two-dimensional supramolecular structure. The propyl groups of H2PIDC- are disordered over conformations with refined occupancies of 0.679 (7):0.321 (7).For our past work based on the H3PIDC (2-propyl-imidazole-4,5-dicarboxylic acid ) ligand, see: Fan et al. (2010); Li, Song, Miao, Tong et al. (2011); Li, Miao et al. (2010); Li, Yan et al. (2010); Song et al. (2010); He et al. (2010); Yan et al. (2010). For our past work based on the H3EIDC (2-ethyl-1H-imidazole-4,5-dicarboxylic acid) ligand, see: Li, Ma et al. (2011); Li, Song, Miao, Hu et al. (2011).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The structure of the title compound, non-H atoms are shown with 30% probability displacement ellipsoids. |
[Cd(C8H9N2O4)2(H2O)2]·2C3H7NO | F(000) = 1416 |
Mr = 688.97 | Dx = 1.519 Mg m−3 |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 3600 reflections |
a = 16.6040 (14) Å | θ = 1.4–28° |
b = 9.8516 (8) Å | µ = 0.79 mm−1 |
c = 18.4154 (16) Å | T = 295 K |
V = 3012.3 (4) Å3 | Block, colourless |
Z = 4 | 0.27 × 0.24 × 0.21 mm |
Rigaku/MSC Mercury CCD diffractometer | 4421 independent reflections |
Radiation source: fine-focus sealed tube | 3111 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ω scans | θmax = 26.3°, θmin = 2.2° |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | h = −20→20 |
Tmin = 0.815, Tmax = 0.851 | k = −11→12 |
16187 measured reflections | l = −22→11 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.035 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.079 | w = 1/[σ2(Fo2) + (0.020P)2 + 3.2P] where P = (Fo2 + 2Fc2)/3 |
S = 1.00 | (Δ/σ)max = 0.002 |
4421 reflections | Δρmax = 0.41 e Å−3 |
444 parameters | Δρmin = −0.39 e Å−3 |
233 restraints | Absolute structure: Flack (1983), 1285 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.04 (4) |
[Cd(C8H9N2O4)2(H2O)2]·2C3H7NO | V = 3012.3 (4) Å3 |
Mr = 688.97 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 16.6040 (14) Å | µ = 0.79 mm−1 |
b = 9.8516 (8) Å | T = 295 K |
c = 18.4154 (16) Å | 0.27 × 0.24 × 0.21 mm |
Rigaku/MSC Mercury CCD diffractometer | 4421 independent reflections |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | 3111 reflections with I > 2σ(I) |
Tmin = 0.815, Tmax = 0.851 | Rint = 0.046 |
16187 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.079 | Δρmax = 0.41 e Å−3 |
S = 1.00 | Δρmin = −0.39 e Å−3 |
4421 reflections | Absolute structure: Flack (1983), 1285 Friedel pairs |
444 parameters | Absolute structure parameter: −0.04 (4) |
233 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cd1 | 0.61035 (2) | 0.49830 (5) | 0.52305 (9) | 0.04966 (12) | |
O1 | 0.4830 (3) | 1.1346 (4) | 0.5670 (3) | 0.0656 (16) | |
O2 | 0.5807 (3) | 1.0620 (5) | 0.6382 (3) | 0.0668 (14) | |
H2 | 0.5962 | 0.9882 | 0.6534 | 0.080* | |
O3 | 0.6581 (3) | 0.8521 (5) | 0.6574 (3) | 0.0677 (14) | |
O4 | 0.6630 (3) | 0.6406 (4) | 0.6142 (3) | 0.0614 (13) | |
O5 | 0.7407 (3) | −0.1351 (4) | 0.4749 (3) | 0.0665 (16) | |
O6 | 0.6439 (3) | −0.0594 (5) | 0.4016 (3) | 0.0674 (14) | |
H6 | 0.6161 | 0.0092 | 0.3987 | 0.081* | |
O7 | 0.5653 (3) | 0.1490 (4) | 0.3846 (3) | 0.0614 (13) | |
O8 | 0.5579 (2) | 0.3569 (4) | 0.4313 (3) | 0.0572 (13) | |
O1W | 0.7047 (3) | 0.5956 (4) | 0.4459 (4) | 0.0730 (16) | |
H1W | 0.748 (3) | 0.554 (6) | 0.440 (5) | 0.110* | |
H2W | 0.718 (4) | 0.675 (3) | 0.442 (5) | 0.110* | |
O2W | 0.5174 (3) | 0.4033 (4) | 0.6026 (3) | 0.0662 (15) | |
H3W | 0.519 (4) | 0.325 (3) | 0.590 (4) | 0.099* | |
H4W | 0.473 (2) | 0.434 (6) | 0.596 (5) | 0.099* | |
N1 | 0.4706 (3) | 0.8811 (4) | 0.4998 (3) | 0.0429 (15) | |
H1A | 0.4358 | 0.9371 | 0.4826 | 0.051* | |
N2 | 0.5401 (2) | 0.6945 (4) | 0.5161 (4) | 0.0391 (11) | |
N3 | 0.7518 (3) | 0.1189 (5) | 0.5425 (3) | 0.0483 (17) | |
H3A | 0.7873 | 0.0636 | 0.5592 | 0.058* | |
N4 | 0.6815 (2) | 0.3026 (4) | 0.5273 (4) | 0.0418 (11) | |
C1 | 0.5241 (3) | 0.9076 (5) | 0.5542 (3) | 0.0398 (14) | |
C2 | 0.5677 (3) | 0.7909 (5) | 0.5641 (3) | 0.0396 (14) | |
C3 | 0.5277 (4) | 1.0437 (6) | 0.5882 (4) | 0.0517 (18) | |
C4 | 0.6343 (4) | 0.7584 (6) | 0.6152 (4) | 0.0527 (17) | |
C5 | 0.4819 (3) | 0.7508 (5) | 0.4775 (3) | 0.0414 (14) | |
C6A | 0.4334 (10) | 0.686 (2) | 0.4188 (5) | 0.059 (3) | 0.680 (7) |
H6A | 0.3842 | 0.7379 | 0.4119 | 0.071* | 0.680 (7) |
H6B | 0.4183 | 0.5953 | 0.4338 | 0.071* | 0.680 (7) |
C7A | 0.4787 (7) | 0.6779 (11) | 0.3461 (6) | 0.076 (3) | 0.680 (7) |
H7A | 0.5335 | 0.6477 | 0.3544 | 0.091* | 0.680 (7) |
H7B | 0.4525 | 0.6126 | 0.3145 | 0.091* | 0.680 (7) |
C8A | 0.4793 (9) | 0.8133 (12) | 0.3110 (7) | 0.105 (4) | 0.680 (7) |
H8A | 0.4993 | 0.8050 | 0.2623 | 0.158* | 0.680 (7) |
H8B | 0.5134 | 0.8735 | 0.3380 | 0.158* | 0.680 (7) |
H8C | 0.4255 | 0.8491 | 0.3098 | 0.158* | 0.680 (7) |
C6B | 0.439 (2) | 0.676 (4) | 0.4189 (8) | 0.065 (4) | 0.320 (7) |
H6C | 0.3824 | 0.6690 | 0.4324 | 0.077* | 0.320 (7) |
H6D | 0.4603 | 0.5846 | 0.4167 | 0.077* | 0.320 (7) |
C7B | 0.4436 (13) | 0.738 (3) | 0.3427 (13) | 0.080 (3) | 0.320 (7) |
H7C | 0.4013 | 0.7008 | 0.3124 | 0.096* | 0.320 (7) |
H7D | 0.4354 | 0.8358 | 0.3458 | 0.096* | 0.320 (7) |
C8B | 0.5227 (14) | 0.710 (3) | 0.3096 (14) | 0.105 (6) | 0.320 (7) |
H8D | 0.5154 | 0.6838 | 0.2598 | 0.157* | 0.320 (7) |
H8E | 0.5487 | 0.6379 | 0.3357 | 0.157* | 0.320 (7) |
H8F | 0.5556 | 0.7902 | 0.3118 | 0.157* | 0.320 (7) |
C9 | 0.6991 (3) | 0.0907 (5) | 0.4879 (3) | 0.0409 (15) | |
C10 | 0.6547 (3) | 0.2079 (5) | 0.4781 (3) | 0.0399 (14) | |
C11 | 0.7400 (3) | 0.2446 (5) | 0.5661 (3) | 0.0434 (15) | |
C12 | 0.6953 (4) | −0.0449 (6) | 0.4524 (4) | 0.0501 (17) | |
C13 | 0.5881 (4) | 0.2408 (6) | 0.4287 (4) | 0.0467 (16) | |
C14A | 0.7785 (8) | 0.3070 (14) | 0.6317 (5) | 0.075 (3) | 0.680 (7) |
H14A | 0.7634 | 0.4018 | 0.6353 | 0.091* | 0.680 (7) |
H14B | 0.8367 | 0.3017 | 0.6276 | 0.091* | 0.680 (7) |
C15A | 0.7501 (10) | 0.2293 (14) | 0.7006 (7) | 0.108 (3) | 0.680 (7) |
H15A | 0.6917 | 0.2293 | 0.7027 | 0.129* | 0.680 (7) |
H15B | 0.7682 | 0.1358 | 0.6982 | 0.129* | 0.680 (7) |
C16A | 0.7827 (10) | 0.2939 (17) | 0.7661 (6) | 0.132 (4) | 0.680 (7) |
H16A | 0.7636 | 0.2465 | 0.8083 | 0.199* | 0.680 (7) |
H16B | 0.7653 | 0.3867 | 0.7681 | 0.199* | 0.680 (7) |
H16C | 0.8404 | 0.2906 | 0.7648 | 0.199* | 0.680 (7) |
C14B | 0.7994 (14) | 0.320 (3) | 0.6113 (10) | 0.068 (4) | 0.320 (7) |
H14C | 0.7917 | 0.4168 | 0.6047 | 0.081* | 0.320 (7) |
H14D | 0.8536 | 0.2976 | 0.5955 | 0.081* | 0.320 (7) |
C15B | 0.7901 (14) | 0.284 (3) | 0.6922 (12) | 0.093 (4) | 0.320 (7) |
H15C | 0.7966 | 0.1874 | 0.6990 | 0.112* | 0.320 (7) |
H15D | 0.8312 | 0.3305 | 0.7203 | 0.112* | 0.320 (7) |
C16B | 0.7095 (15) | 0.327 (3) | 0.7171 (14) | 0.113 (6) | 0.320 (7) |
H16D | 0.7064 | 0.3180 | 0.7689 | 0.169* | 0.320 (7) |
H16E | 0.6693 | 0.2702 | 0.6949 | 0.169* | 0.320 (7) |
H16F | 0.7003 | 0.4196 | 0.7037 | 0.169* | 0.320 (7) |
O9 | 0.3702 (2) | 0.5396 (4) | 0.6089 (3) | 0.0675 (14) | |
N5 | 0.3911 (3) | 0.7234 (5) | 0.6798 (3) | 0.0514 (13) | |
C17 | 0.3557 (3) | 0.6572 (5) | 0.6270 (3) | 0.0559 (19) | |
H17A | 0.3162 | 0.7031 | 0.6009 | 0.067* | |
C18 | 0.3685 (3) | 0.8631 (5) | 0.6949 (3) | 0.080 (2) | |
H18A | 0.3248 | 0.8892 | 0.6637 | 0.119* | |
H18B | 0.4138 | 0.9215 | 0.6864 | 0.119* | |
H18C | 0.3519 | 0.8709 | 0.7447 | 0.119* | |
C19 | 0.4499 (5) | 0.6607 (9) | 0.7254 (5) | 0.087 (3) | |
H19A | 0.4500 | 0.5645 | 0.7170 | 0.131* | |
H19B | 0.4371 | 0.6784 | 0.7753 | 0.131* | |
H19C | 0.5022 | 0.6971 | 0.7145 | 0.131* | |
O10 | 0.8514 (2) | 0.4647 (4) | 0.4356 (3) | 0.0676 (15) | |
N6 | 0.8302 (3) | 0.2882 (5) | 0.3600 (3) | 0.0548 (14) | |
C20 | 0.8676 (4) | 0.3505 (7) | 0.4120 (4) | 0.060 (2) | |
H20A | 0.9104 | 0.3050 | 0.4336 | 0.072* | |
C21 | 0.7640 (4) | 0.3522 (8) | 0.3232 (5) | 0.075 (2) | |
H21A | 0.7836 | 0.4272 | 0.2951 | 0.112* | |
H21B | 0.7258 | 0.3843 | 0.3583 | 0.112* | |
H21C | 0.7384 | 0.2876 | 0.2917 | 0.112* | |
C22 | 0.8521 (5) | 0.1525 (7) | 0.3359 (5) | 0.084 (3) | |
H22A | 0.8067 | 0.0929 | 0.3416 | 0.126* | |
H22B | 0.8962 | 0.1196 | 0.3646 | 0.126* | |
H22C | 0.8676 | 0.1553 | 0.2857 | 0.126* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.04830 (18) | 0.02748 (15) | 0.0732 (3) | 0.00652 (16) | −0.0012 (3) | −0.0011 (2) |
O1 | 0.060 (3) | 0.033 (2) | 0.104 (5) | 0.009 (2) | 0.004 (3) | −0.005 (2) |
O2 | 0.079 (4) | 0.040 (3) | 0.082 (4) | 0.000 (3) | 0.002 (3) | −0.019 (3) |
O3 | 0.080 (4) | 0.054 (3) | 0.069 (4) | 0.003 (2) | −0.028 (3) | −0.015 (3) |
O4 | 0.062 (3) | 0.047 (3) | 0.075 (4) | 0.005 (2) | −0.024 (3) | 0.003 (3) |
O5 | 0.063 (3) | 0.031 (2) | 0.105 (5) | 0.011 (2) | 0.008 (3) | −0.005 (3) |
O6 | 0.075 (4) | 0.039 (3) | 0.088 (4) | 0.004 (3) | −0.011 (3) | −0.019 (3) |
O7 | 0.070 (3) | 0.048 (3) | 0.067 (3) | −0.003 (2) | −0.015 (3) | −0.008 (2) |
O8 | 0.060 (3) | 0.038 (2) | 0.074 (4) | 0.010 (2) | −0.015 (3) | 0.002 (2) |
O1W | 0.066 (3) | 0.040 (3) | 0.113 (5) | −0.001 (2) | 0.022 (4) | −0.002 (3) |
O2W | 0.064 (3) | 0.037 (2) | 0.098 (4) | 0.001 (2) | 0.017 (3) | −0.005 (3) |
N1 | 0.038 (3) | 0.033 (2) | 0.059 (4) | 0.008 (2) | −0.001 (3) | 0.008 (2) |
N2 | 0.040 (2) | 0.030 (2) | 0.047 (3) | 0.0019 (17) | −0.008 (3) | −0.007 (3) |
N3 | 0.037 (3) | 0.036 (2) | 0.072 (5) | 0.007 (2) | −0.002 (3) | 0.012 (3) |
N4 | 0.038 (2) | 0.0281 (19) | 0.059 (3) | 0.0001 (17) | 0.003 (3) | 0.008 (3) |
C1 | 0.037 (3) | 0.031 (3) | 0.052 (4) | 0.002 (2) | 0.004 (3) | 0.000 (3) |
C2 | 0.043 (3) | 0.031 (3) | 0.045 (4) | 0.001 (2) | 0.002 (3) | 0.004 (3) |
C3 | 0.047 (4) | 0.035 (3) | 0.073 (5) | −0.005 (3) | 0.016 (4) | −0.007 (3) |
C4 | 0.052 (4) | 0.048 (4) | 0.057 (5) | 0.000 (3) | −0.010 (4) | 0.008 (4) |
C5 | 0.036 (3) | 0.035 (3) | 0.053 (4) | 0.001 (3) | 0.001 (3) | 0.002 (3) |
C6A | 0.056 (4) | 0.056 (4) | 0.064 (5) | 0.001 (4) | −0.011 (4) | −0.006 (4) |
C7A | 0.068 (5) | 0.081 (5) | 0.079 (5) | 0.004 (4) | −0.009 (4) | −0.006 (4) |
C8A | 0.112 (7) | 0.109 (6) | 0.095 (7) | −0.021 (6) | 0.006 (6) | 0.017 (6) |
C6B | 0.061 (6) | 0.064 (6) | 0.069 (6) | 0.002 (5) | −0.010 (5) | −0.005 (5) |
C7B | 0.079 (6) | 0.081 (6) | 0.080 (6) | −0.002 (5) | −0.007 (5) | −0.004 (5) |
C8B | 0.106 (9) | 0.104 (9) | 0.103 (9) | −0.006 (7) | −0.006 (8) | 0.001 (8) |
C9 | 0.045 (3) | 0.025 (3) | 0.053 (4) | −0.004 (2) | 0.012 (3) | 0.003 (3) |
C10 | 0.043 (3) | 0.033 (3) | 0.044 (4) | 0.004 (2) | 0.004 (3) | 0.002 (3) |
C11 | 0.045 (4) | 0.036 (3) | 0.050 (4) | −0.001 (3) | 0.003 (3) | −0.002 (3) |
C12 | 0.045 (4) | 0.034 (3) | 0.071 (5) | −0.007 (3) | 0.018 (4) | −0.007 (3) |
C13 | 0.053 (4) | 0.033 (3) | 0.054 (5) | −0.002 (3) | 0.005 (4) | −0.003 (3) |
C14A | 0.075 (5) | 0.070 (5) | 0.082 (5) | −0.004 (4) | −0.018 (5) | −0.009 (5) |
C15A | 0.108 (6) | 0.119 (6) | 0.097 (5) | −0.025 (5) | −0.002 (5) | −0.011 (5) |
C16A | 0.150 (8) | 0.152 (8) | 0.095 (5) | −0.016 (7) | −0.017 (6) | −0.010 (6) |
C14B | 0.068 (7) | 0.067 (6) | 0.067 (7) | −0.011 (6) | −0.012 (6) | −0.004 (6) |
C15B | 0.098 (6) | 0.097 (6) | 0.084 (6) | −0.022 (5) | −0.012 (6) | −0.008 (6) |
C16B | 0.122 (9) | 0.114 (9) | 0.102 (9) | −0.010 (8) | −0.011 (8) | −0.008 (8) |
O9 | 0.052 (3) | 0.053 (3) | 0.098 (4) | −0.003 (2) | −0.003 (3) | −0.012 (3) |
N5 | 0.045 (3) | 0.050 (3) | 0.059 (4) | −0.002 (3) | 0.005 (3) | −0.002 (3) |
C17 | 0.043 (4) | 0.045 (4) | 0.080 (6) | 0.004 (3) | 0.002 (4) | −0.006 (4) |
C18 | 0.108 (6) | 0.046 (4) | 0.084 (6) | 0.000 (4) | 0.012 (5) | −0.013 (4) |
C19 | 0.090 (6) | 0.092 (6) | 0.080 (7) | 0.018 (5) | −0.010 (6) | −0.008 (5) |
O10 | 0.049 (3) | 0.053 (3) | 0.101 (4) | −0.002 (2) | −0.013 (3) | −0.026 (3) |
N6 | 0.056 (3) | 0.051 (3) | 0.058 (4) | −0.006 (3) | 0.005 (3) | −0.011 (3) |
C20 | 0.039 (3) | 0.058 (4) | 0.082 (6) | −0.001 (3) | −0.006 (4) | 0.001 (4) |
C21 | 0.058 (5) | 0.090 (6) | 0.076 (6) | 0.017 (4) | −0.007 (4) | −0.019 (5) |
C22 | 0.110 (7) | 0.051 (4) | 0.092 (7) | 0.001 (4) | 0.029 (6) | −0.011 (4) |
Cd1—N4 | 2.262 (4) | C7B—H7D | 0.9700 |
Cd1—N2 | 2.262 (4) | C8B—H8D | 0.9600 |
Cd1—O2W | 2.325 (6) | C8B—H8E | 0.9600 |
Cd1—O1W | 2.322 (5) | C8B—H8F | 0.9600 |
Cd1—O4 | 2.356 (5) | C9—C10 | 1.381 (7) |
Cd1—O8 | 2.357 (5) | C9—C12 | 1.489 (8) |
O1—C3 | 1.227 (7) | C10—C13 | 1.468 (9) |
O2—C3 | 1.287 (8) | C11—C14B | 1.490 (9) |
O2—H2 | 0.8200 | C11—C14A | 1.499 (8) |
O3—C4 | 1.269 (8) | C14A—C15A | 1.555 (11) |
O4—C4 | 1.255 (7) | C14A—H14A | 0.9700 |
O5—C12 | 1.236 (7) | C14A—H14B | 0.9700 |
O6—C12 | 1.275 (8) | C15A—C16A | 1.467 (11) |
O6—H6 | 0.8200 | C15A—H15A | 0.9700 |
O7—C13 | 1.274 (7) | C15A—H15B | 0.9700 |
O8—C13 | 1.251 (6) | C16A—H16A | 0.9600 |
O1W—H1W | 0.83 (2) | C16A—H16B | 0.9600 |
O1W—H2W | 0.82 (2) | C16A—H16C | 0.9600 |
O2W—H3W | 0.80 (2) | C14B—C15B | 1.537 (12) |
O2W—H4W | 0.80 (2) | C14B—H14C | 0.9700 |
N1—C5 | 1.360 (7) | C14B—H14D | 0.9700 |
N1—C1 | 1.363 (7) | C15B—C16B | 1.475 (12) |
N1—H1A | 0.8600 | C15B—H15C | 0.9700 |
N2—C5 | 1.321 (7) | C15B—H15D | 0.9700 |
N2—C2 | 1.376 (7) | C16B—H16D | 0.9600 |
N3—C11 | 1.327 (7) | C16B—H16E | 0.9600 |
N3—C9 | 1.363 (7) | C16B—H16F | 0.9600 |
N3—H3A | 0.8600 | O9—C17 | 1.229 (6) |
N4—C11 | 1.334 (7) | N5—C17 | 1.311 (7) |
N4—C10 | 1.375 (8) | N5—C19 | 1.429 (9) |
C1—C2 | 1.372 (7) | N5—C18 | 1.454 (6) |
C1—C3 | 1.480 (8) | C17—H17A | 0.9300 |
C2—C4 | 1.486 (9) | C18—H18A | 0.9600 |
C5—C6B | 1.490 (9) | C18—H18B | 0.9600 |
C5—C6A | 1.492 (7) | C18—H18C | 0.9600 |
C6A—C7A | 1.537 (11) | C19—H19A | 0.9600 |
C6A—H6A | 0.9700 | C19—H19B | 0.9600 |
C6A—H6B | 0.9700 | C19—H19C | 0.9600 |
C7A—C8A | 1.483 (10) | O10—C20 | 1.235 (7) |
C7A—H7A | 0.9700 | N6—C20 | 1.296 (8) |
C7A—H7B | 0.9700 | N6—C21 | 1.436 (9) |
C8A—H8A | 0.9600 | N6—C22 | 1.455 (8) |
C8A—H8B | 0.9600 | C20—H20A | 0.9300 |
C8A—H8C | 0.9600 | C21—H21A | 0.9600 |
C6B—C7B | 1.534 (12) | C21—H21B | 0.9600 |
C6B—H6C | 0.9700 | C21—H21C | 0.9600 |
C6B—H6D | 0.9700 | C22—H22A | 0.9600 |
C7B—C8B | 1.476 (12) | C22—H22B | 0.9600 |
C7B—H7C | 0.9700 | C22—H22C | 0.9600 |
N4—Cd1—N2 | 178.7 (3) | N3—C9—C10 | 105.6 (5) |
N4—Cd1—O2W | 88.96 (17) | N3—C9—C12 | 122.3 (5) |
N2—Cd1—O2W | 92.14 (18) | C10—C9—C12 | 132.1 (6) |
N4—Cd1—O1W | 91.17 (18) | N4—C10—C9 | 108.0 (5) |
N2—Cd1—O1W | 87.75 (17) | N4—C10—C13 | 120.1 (5) |
O2W—Cd1—O1W | 178.6 (2) | C9—C10—C13 | 131.8 (6) |
N4—Cd1—O4 | 106.78 (19) | N3—C11—N4 | 109.4 (5) |
N2—Cd1—O4 | 73.93 (18) | N3—C11—C14B | 123.4 (14) |
O2W—Cd1—O4 | 92.1 (2) | N4—C11—C14B | 124.6 (14) |
O1W—Cd1—O4 | 86.57 (18) | N3—C11—C14A | 125.7 (8) |
N4—Cd1—O8 | 73.39 (19) | N4—C11—C14A | 124.5 (8) |
N2—Cd1—O8 | 105.90 (17) | O5—C12—O6 | 125.0 (6) |
O2W—Cd1—O8 | 88.21 (17) | O5—C12—C9 | 118.2 (7) |
O1W—Cd1—O8 | 93.1 (2) | O6—C12—C9 | 116.8 (6) |
O4—Cd1—O8 | 179.7 (2) | O8—C13—O7 | 123.6 (6) |
C3—O2—H2 | 109.5 | O8—C13—C10 | 118.8 (6) |
C4—O4—Cd1 | 114.8 (4) | O7—C13—C10 | 117.6 (5) |
C12—O6—H6 | 109.5 | C11—C14A—C15A | 109.1 (8) |
C13—O8—Cd1 | 114.8 (4) | C11—C14A—H14A | 109.9 |
Cd1—O1W—H1W | 117 (6) | C15A—C14A—H14A | 109.9 |
Cd1—O1W—H2W | 129 (6) | C11—C14A—H14B | 109.9 |
H1W—O1W—H2W | 104 (4) | C15A—C14A—H14B | 109.9 |
Cd1—O2W—H3W | 101 (6) | H14A—C14A—H14B | 108.3 |
Cd1—O2W—H4W | 111 (6) | C16A—C15A—C14A | 110.3 (10) |
H3W—O2W—H4W | 109 (4) | C16A—C15A—H15A | 109.6 |
C5—N1—C1 | 108.2 (4) | C14A—C15A—H15A | 109.6 |
C5—N1—H1A | 125.9 | C16A—C15A—H15B | 109.6 |
C1—N1—H1A | 125.9 | C14A—C15A—H15B | 109.6 |
C5—N2—C2 | 107.5 (4) | H15A—C15A—H15B | 108.1 |
C5—N2—Cd1 | 140.0 (4) | C11—C14B—C15B | 111.2 (16) |
C2—N2—Cd1 | 112.4 (4) | C11—C14B—H14C | 109.4 |
C11—N3—C9 | 109.7 (5) | C15B—C14B—H14C | 109.4 |
C11—N3—H3A | 125.2 | C11—C14B—H14D | 109.4 |
C9—N3—H3A | 125.2 | C15B—C14B—H14D | 109.4 |
C11—N4—C10 | 107.3 (4) | H14C—C14B—H14D | 108.0 |
C11—N4—Cd1 | 139.8 (5) | C16B—C15B—C14B | 109.2 (11) |
C10—N4—Cd1 | 112.8 (4) | C16B—C15B—H15C | 109.8 |
N1—C1—C2 | 106.3 (5) | C14B—C15B—H15C | 109.8 |
N1—C1—C3 | 120.7 (5) | C16B—C15B—H15D | 109.8 |
C2—C1—C3 | 132.9 (6) | C14B—C15B—H15D | 109.8 |
C1—C2—N2 | 108.4 (5) | H15C—C15B—H15D | 108.3 |
C1—C2—C4 | 131.1 (6) | C15B—C16B—H16D | 109.5 |
N2—C2—C4 | 120.5 (5) | C15B—C16B—H16E | 109.5 |
O1—C3—O2 | 122.6 (6) | H16D—C16B—H16E | 109.5 |
O1—C3—C1 | 120.1 (7) | C15B—C16B—H16F | 109.5 |
O2—C3—C1 | 117.3 (6) | H16D—C16B—H16F | 109.5 |
O4—C4—O3 | 124.2 (6) | H16E—C16B—H16F | 109.5 |
O4—C4—C2 | 118.2 (6) | C17—N5—C19 | 121.9 (6) |
O3—C4—C2 | 117.6 (5) | C17—N5—C18 | 119.9 (6) |
N2—C5—N1 | 109.5 (5) | C19—N5—C18 | 118.2 (6) |
N2—C5—C6B | 122 (2) | O9—C17—N5 | 125.6 (5) |
N1—C5—C6B | 128 (2) | O9—C17—H17A | 117.2 |
N2—C5—C6A | 127.3 (10) | N5—C17—H17A | 117.2 |
N1—C5—C6A | 123.2 (10) | N5—C18—H18A | 109.5 |
C5—C6A—C7A | 113.0 (9) | N5—C18—H18B | 109.5 |
C5—C6A—H6A | 109.0 | H18A—C18—H18B | 109.5 |
C7A—C6A—H6A | 109.0 | N5—C18—H18C | 109.5 |
C5—C6A—H6B | 109.0 | H18A—C18—H18C | 109.5 |
C7A—C6A—H6B | 109.0 | H18B—C18—H18C | 109.5 |
H6A—C6A—H6B | 107.8 | N5—C19—H19A | 109.5 |
C8A—C7A—C6A | 109.6 (10) | N5—C19—H19B | 109.5 |
C8A—C7A—H7A | 109.8 | H19A—C19—H19B | 109.5 |
C6A—C7A—H7A | 109.8 | N5—C19—H19C | 109.5 |
C8A—C7A—H7B | 109.8 | H19A—C19—H19C | 109.5 |
C6A—C7A—H7B | 109.8 | H19B—C19—H19C | 109.5 |
H7A—C7A—H7B | 108.2 | C20—N6—C21 | 120.5 (6) |
C5—C6B—C7B | 116 (2) | C20—N6—C22 | 122.7 (7) |
C5—C6B—H6C | 108.3 | C21—N6—C22 | 116.8 (6) |
C7B—C6B—H6C | 108.3 | O10—C20—N6 | 125.9 (6) |
C5—C6B—H6D | 108.3 | O10—C20—H20A | 117.0 |
C7B—C6B—H6D | 108.3 | N6—C20—H20A | 117.0 |
H6C—C6B—H6D | 107.4 | N6—C21—H21A | 109.5 |
C8B—C7B—C6B | 110.4 (12) | N6—C21—H21B | 109.5 |
C8B—C7B—H7C | 109.6 | H21A—C21—H21B | 109.5 |
C6B—C7B—H7C | 109.6 | N6—C21—H21C | 109.5 |
C8B—C7B—H7D | 109.6 | H21A—C21—H21C | 109.5 |
C6B—C7B—H7D | 109.6 | H21B—C21—H21C | 109.5 |
H7C—C7B—H7D | 108.1 | N6—C22—H22A | 109.5 |
C7B—C8B—H8D | 109.5 | N6—C22—H22B | 109.5 |
C7B—C8B—H8E | 109.5 | H22A—C22—H22B | 109.5 |
H8D—C8B—H8E | 109.5 | N6—C22—H22C | 109.5 |
C7B—C8B—H8F | 109.5 | H22A—C22—H22C | 109.5 |
H8D—C8B—H8F | 109.5 | H22B—C22—H22C | 109.5 |
H8E—C8B—H8F | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3 | 0.82 | 1.69 | 2.460 (6) | 155 |
O6—H6···O7 | 0.82 | 1.64 | 2.453 (6) | 174 |
O1W—H1W···O10 | 0.83 (2) | 1.94 (2) | 2.763 (6) | 175 (9) |
O1W—H2W···O5i | 0.82 (2) | 2.00 (4) | 2.771 (6) | 158 (9) |
O2W—H3W···O1ii | 0.80 (2) | 2.02 (3) | 2.787 (6) | 161 (7) |
O2W—H4W···O9 | 0.80 (2) | 2.02 (3) | 2.791 (6) | 162 (8) |
N1—H1A···O10iii | 0.86 | 1.91 | 2.761 (6) | 170 |
N3—H3A···O9iv | 0.86 | 1.94 | 2.792 (6) | 171 |
Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z; (iii) x−1/2, −y+3/2, z; (iv) x+1/2, −y+1/2, z. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C8H9N2O4)2(H2O)2]·2C3H7NO |
Mr | 688.97 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 295 |
a, b, c (Å) | 16.6040 (14), 9.8516 (8), 18.4154 (16) |
V (Å3) | 3012.3 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.79 |
Crystal size (mm) | 0.27 × 0.24 × 0.21 |
Data collection | |
Diffractometer | Rigaku/MSC Mercury CCD |
Absorption correction | Multi-scan (REQAB; Jacobson, 1998) |
Tmin, Tmax | 0.815, 0.851 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16187, 4421, 3111 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.622 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.079, 1.00 |
No. of reflections | 4421 |
No. of parameters | 444 |
No. of restraints | 233 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.39 |
Absolute structure | Flack (1983), 1285 Friedel pairs |
Absolute structure parameter | −0.04 (4) |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Cd1—N4 | 2.262 (4) | Cd1—O1W | 2.322 (5) |
Cd1—N2 | 2.262 (4) | Cd1—O4 | 2.356 (5) |
Cd1—O2W | 2.325 (6) | Cd1—O8 | 2.357 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3 | 0.82 | 1.69 | 2.460 (6) | 155.2 |
O6—H6···O7 | 0.82 | 1.64 | 2.453 (6) | 173.9 |
O1W—H1W···O10 | 0.83 (2) | 1.94 (2) | 2.763 (6) | 175 (9) |
O1W—H2W···O5i | 0.82 (2) | 2.00 (4) | 2.771 (6) | 158 (9) |
O2W—H3W···O1ii | 0.80 (2) | 2.02 (3) | 2.787 (6) | 161 (7) |
O2W—H4W···O9 | 0.80 (2) | 2.02 (3) | 2.791 (6) | 162 (8) |
N1—H1A···O10iii | 0.86 | 1.91 | 2.761 (6) | 170.3 |
N3—H3A···O9iv | 0.86 | 1.94 | 2.792 (6) | 170.8 |
Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z; (iii) x−1/2, −y+3/2, z; (iv) x+1/2, −y+1/2, z. |
Acknowledgements
The work was supported by the Nonprofit Industry Foundation of the National Ocean Administration of China (grant No. 2000905021), the Guangdong Oceanic Fisheries Technology Promotion Project [grant No. A2009003–018(c)], the Guangdong Chinese Academy of Science Comprehensive Strategic Cooperation Project (grant No. 2009B091300121), the Guangdong Province Key Project in the Field of Social Development (grant No. A2009011–007(c)), the Science and Technology Department of Guangdong Province Project (grant No. 00087061110314018) and the Guangdong Natural Science Fundation (No. 9252408801000002).
References
Fan, R.-Z., Li, S.-J., Song, W.-D., Miao, D.-L. & Hu, S.-W. (2010). Acta Cryst. E66, m897–m898. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
He, L.-Z., Li, S.-J., Song, W.-D. & Miao, D.-L. (2010). Acta Cryst. E66, m896. Web of Science CrossRef IUCr Journals Google Scholar
Jacobson, R. (1998). REQAB. Molecular Structure Corporation, The Woodlands, Texas, USA. Google Scholar
Li, S.-J., Ma, X.-T., Song, W.-D., Li, X.-F. & Liu, J.-H. (2011). Acta Cryst. E67, m295–m296. Web of Science CSD CrossRef IUCr Journals Google Scholar
Li, S.-J., Miao, D.-L., Song, W.-D., Li, S.-H. & Yan, J.-B. (2010). Acta Cryst. E66, m1096–m1097. Web of Science CSD CrossRef IUCr Journals Google Scholar
Li, S. J., Song, W. D., Miao, D. L., Hu, S. W., Ji, L. L. & Ma, D. Y. (2011). Z. Anorg. Allg. Chem. 637, 1246–1252. Web of Science CSD CrossRef CAS Google Scholar
Li, S. J., Song, W. D., Miao, D. L., Tong, S. W., Yan, J. B. & &Ji, L. L. (2011). Chin. J. Inorg. Chem. 27, 2088–2094. CAS Google Scholar
Li, S.-J., Yan, J.-B., Song, W.-D., Wang, H. & Miao, D.-L. (2010). Acta Cryst. E66, m280. Web of Science CSD CrossRef IUCr Journals Google Scholar
Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku/MSC (2002). CrystalStructure. Rigaku/MSC, The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Song, W.-D., Yan, J.-B., Li, S.-J., Miao, D.-L. & Li, X.-F. (2010). Acta Cryst. E66, m53. Web of Science CSD CrossRef IUCr Journals Google Scholar
Yan, J.-B., Li, S.-J., Song, W.-D., Wang, H. & Miao, D.-L. (2010). Acta Cryst. E66, m99. Web of Science CSD CrossRef IUCr Journals Google Scholar
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In recent years, structures containing metals and N-heterocyclic carboxylic acids have drawn increasing attention due to their fascinating structures and potential applications in many fields. For instance, N-heterocyclic carboxylic acids H3IDC (imidazole-4,5-dicarboxylic acid) which can be deprotonated to form H2IDC-, HIDC2- and IDC3- anions under various pH conditions, have been broadly used to obtain a variety of metal-organic frameworks with novel structures and exceptional properties. In our previous research, efforts have been focused on the design and synthesis of interesting metal organic complexes with derivatives of H3IDC, such as H3PIDC (2-propyl-imidazole-4,5-dicarboxylic acid) (Fan et al., 2010; Li, Miao et al., 2010; Li, Yan et al., 2010; Li, Song, Miao, Tong et al., 2011; He et al., 2010; Song et al., 2010; Yan et al., 2010) and H3EIDC (2-ethyl-1H-imidazole-4,5-dicarboxylic acid) (Li, Song, Miao, Hu et al., 2011; Li, Ma et al., 2011). To continue our studies, we report the synthesis and structure of a new Cd(II) complex obtained from the H3PIDC ligand and cadmiun nitrate under hydrothermal conditions.
As shown in the Fig. 1, the title complex consists of one CdII ion, two mono-deprotonated H2PIDC ligands, two coordinated water molecules and two dimethylformamide solvent molecules. The CdII atom is six-coordinate in a slightly distorted octahedral geometry, connected with two N,O-bidentate ligands [Cd—O = 2.321 (5) Å and Cd—N = 2.262 (4) Å] and two coordinated water molecules [Cd—O = 2.356 (5) Å]. It is noted that the two imidazole rings are nearly coplanar. In the crystal structure, the complex molecules and dimethylformamide solvent molecules are connected via hydrogen bonds (Table 1) into a two-dimensional supramolecular structure. The propyl groups of H2PIDC- are disordered over conformations with refined occupancies of 0.679 (7):0.321 (7).