organic compounds
(S)-4-Phenyl-2-(1,2,3,4-tetrahydroisoquinolin-3-yl)-1,3-thiazole
aSchool of Pharmacy and Pharmacology, University of KwaZulu-Natal, Durban 4000, South Africa, and bSchool of Chemistry, University of KwaZulu-Natal, Durban 4000, South Africa
*Correspondence e-mail: maguireg@ukzn.ac.za
In the title compound, C18H16N2S, the N-containing ring adopts a half-chair configuration. The crystal packing features C—H⋯N contacts. There is no π–π stacking within the crystal structure.
Related literature
The title compound is a potential ligand for the asymmetric Henry reaction. For the application of these ligands as catalysts, see: Chakka et al. (2010); Kawthekar et al. (2010); Peters et al. (2010); Naicker et al. (2010). For related structures, see: Naicker et al. (2011a,b).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811052585/gw2110sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811052585/gw2110Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811052585/gw2110Isup3.cml
The N-protected thiazole (3 mmol) was dissolved in THF (15 ml), to this 12 M HCl (15 ml) was added slowly and the reaction mixture was stirred at room temperature for 2 h. THF was evaporated under vacuum. The reaction was monitored by TLC using EtOAc/Hexane (20:80, Rf = 0.5). The reaction mixture was slowly poured into aqueous saturated NaHCO3 solution, the mixture was then extracted with CH2Cl2 (3 x 30 ml). The combined organic layer was dried over MgSO4. The solvent was evaporated under reduced pressure, the residue was purified by
on silica gel (deactivated with 5% Et3N) with Et3N/EtOAc/Hexane (5/8/100) as the to afford the thiazole as a yellow solid (0.27 g, yield 95%). M.p. = 357–360 K.Recrystallization from tetrahydrofuran at room temperature afforded colourless crystals suitable for X-ray analysis.
All non-hydrogen atoms were refined anisotropically. All hydrogen atoms, except H1N, were positioned geometrically with C—H distances ranging from 0.95 Å to 1.00 Å and refined as riding on their parent atoms with Uiso (H) = 1.2 - 1.5 Ueq (C).
Data collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C18H16N2S | Dx = 1.328 Mg m−3 |
Mr = 292.39 | Mo Kα radiation, λ = 0.71073 Å |
Trigonal, P32 | Cell parameters from 14735 reflections |
Hall symbol: P 32 | θ = 2.5–28.4° |
a = 16.223 (1) Å | µ = 0.22 mm−1 |
c = 4.8130 (3) Å | T = 173 K |
V = 1097.0 (1) Å3 | Needle, yellow |
Z = 3 | 0.20 × 0.10 × 0.09 mm |
F(000) = 462 |
Bruker Kappa DUO APEXII diffractometer | 3676 independent reflections |
Radiation source: fine-focus sealed tube | 3205 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
0.5° ϕ scans and ω scans | θmax = 28.4°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | h = −21→21 |
Tmin = 0.958, Tmax = 0.981 | k = −21→21 |
14735 measured reflections | l = −6→6 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.035 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.084 | w = 1/[σ2(Fo2) + (0.0433P)2 + 0.1159P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max < 0.001 |
3676 reflections | Δρmax = 0.23 e Å−3 |
194 parameters | Δρmin = −0.22 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1832 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.02 (6) |
C18H16N2S | Z = 3 |
Mr = 292.39 | Mo Kα radiation |
Trigonal, P32 | µ = 0.22 mm−1 |
a = 16.223 (1) Å | T = 173 K |
c = 4.8130 (3) Å | 0.20 × 0.10 × 0.09 mm |
V = 1097.0 (1) Å3 |
Bruker Kappa DUO APEXII diffractometer | 3676 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | 3205 reflections with I > 2σ(I) |
Tmin = 0.958, Tmax = 0.981 | Rint = 0.030 |
14735 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.084 | Δρmax = 0.23 e Å−3 |
S = 1.03 | Δρmin = −0.22 e Å−3 |
3676 reflections | Absolute structure: Flack (1983), 1832 Friedel pairs |
194 parameters | Absolute structure parameter: −0.02 (6) |
1 restraint |
Experimental. Half sphere of data collected using the Bruker SAINT software package. Crystal to detector distance = 30 mm; combination of ϕ and ω scans of 0.5°, 60 s per °, 2 iterations. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.00297 (4) | 0.88075 (3) | 0.01223 (14) | 0.04813 (15) | |
N1 | −0.22129 (10) | 0.70793 (10) | 0.1094 (3) | 0.0316 (3) | |
H1N | −0.2357 (14) | 0.6647 (15) | −0.032 (4) | 0.036 (5)* | |
N2 | −0.01656 (9) | 0.71580 (9) | −0.0576 (3) | 0.0287 (3) | |
C1 | −0.30267 (13) | 0.67560 (13) | 0.2960 (4) | 0.0359 (4) | |
H1A | −0.3603 | 0.6569 | 0.1825 | 0.043* | |
H1B | −0.2926 | 0.7298 | 0.4142 | 0.043* | |
C2 | −0.32126 (11) | 0.59286 (11) | 0.4831 (4) | 0.0287 (3) | |
C3 | −0.40599 (13) | 0.54595 (12) | 0.6353 (4) | 0.0359 (4) | |
H3 | −0.4520 | 0.5655 | 0.6174 | 0.043* | |
C4 | −0.42359 (13) | 0.47165 (13) | 0.8110 (4) | 0.0393 (4) | |
H4 | −0.4816 | 0.4402 | 0.9122 | 0.047* | |
C5 | −0.35671 (14) | 0.44283 (12) | 0.8399 (4) | 0.0385 (4) | |
H5 | −0.3688 | 0.3915 | 0.9599 | 0.046* | |
C6 | −0.27209 (13) | 0.48947 (12) | 0.6927 (4) | 0.0323 (4) | |
H6 | −0.2260 | 0.4702 | 0.7145 | 0.039* | |
C7 | −0.25347 (12) | 0.56434 (11) | 0.5129 (3) | 0.0272 (3) | |
C8 | −0.16028 (11) | 0.61485 (12) | 0.3565 (4) | 0.0290 (3) | |
H8A | −0.1630 | 0.5759 | 0.1945 | 0.035* | |
H8B | −0.1080 | 0.6222 | 0.4791 | 0.035* | |
C9 | −0.13971 (12) | 0.71258 (12) | 0.2570 (4) | 0.0307 (4) | |
H9 | −0.1268 | 0.7538 | 0.4244 | 0.037* | |
C10 | −0.05355 (12) | 0.75944 (11) | 0.0730 (4) | 0.0300 (3) | |
C11 | 0.08088 (13) | 0.87065 (13) | −0.2040 (4) | 0.0388 (4) | |
H11 | 0.1314 | 0.9222 | −0.3007 | 0.047* | |
C12 | 0.06065 (11) | 0.77863 (11) | −0.2186 (4) | 0.0297 (3) | |
C13 | 0.11195 (12) | 0.74191 (12) | −0.3839 (4) | 0.0304 (4) | |
C14 | 0.08499 (13) | 0.64602 (13) | −0.3768 (4) | 0.0362 (4) | |
H14 | 0.0336 | 0.6036 | −0.2616 | 0.043* | |
C15 | 0.13257 (14) | 0.61174 (14) | −0.5369 (5) | 0.0433 (4) | |
H15 | 0.1135 | 0.5460 | −0.5304 | 0.052* | |
C16 | 0.20739 (14) | 0.67241 (16) | −0.7052 (5) | 0.0468 (5) | |
H16 | 0.2398 | 0.6489 | −0.8150 | 0.056* | |
C17 | 0.23454 (16) | 0.76791 (16) | −0.7122 (5) | 0.0506 (5) | |
H17 | 0.2860 | 0.8102 | −0.8275 | 0.061* | |
C18 | 0.18785 (15) | 0.80224 (15) | −0.5542 (4) | 0.0435 (5) | |
H18 | 0.2076 | 0.8681 | −0.5611 | 0.052* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0455 (3) | 0.0274 (2) | 0.0703 (3) | 0.0174 (2) | 0.0198 (3) | 0.0061 (2) |
N1 | 0.0336 (7) | 0.0316 (7) | 0.0329 (8) | 0.0188 (6) | 0.0027 (6) | −0.0008 (6) |
N2 | 0.0263 (7) | 0.0257 (7) | 0.0299 (7) | 0.0099 (6) | 0.0002 (6) | 0.0010 (6) |
C1 | 0.0344 (9) | 0.0346 (9) | 0.0433 (10) | 0.0208 (8) | 0.0042 (8) | 0.0016 (8) |
C2 | 0.0280 (8) | 0.0268 (8) | 0.0284 (8) | 0.0116 (7) | −0.0020 (7) | −0.0058 (7) |
C3 | 0.0294 (8) | 0.0337 (9) | 0.0423 (10) | 0.0141 (7) | 0.0030 (8) | −0.0054 (8) |
C4 | 0.0344 (9) | 0.0319 (9) | 0.0413 (10) | 0.0088 (7) | 0.0103 (8) | −0.0014 (8) |
C5 | 0.0463 (11) | 0.0280 (8) | 0.0348 (10) | 0.0138 (8) | 0.0055 (8) | 0.0025 (7) |
C6 | 0.0372 (9) | 0.0299 (8) | 0.0300 (9) | 0.0169 (7) | −0.0014 (7) | −0.0031 (7) |
C7 | 0.0291 (8) | 0.0255 (7) | 0.0243 (8) | 0.0117 (6) | −0.0010 (6) | −0.0058 (6) |
C8 | 0.0303 (8) | 0.0295 (8) | 0.0290 (8) | 0.0163 (7) | 0.0008 (7) | −0.0004 (7) |
C9 | 0.0321 (8) | 0.0278 (8) | 0.0314 (9) | 0.0143 (7) | 0.0012 (7) | −0.0026 (7) |
C10 | 0.0293 (8) | 0.0241 (8) | 0.0332 (9) | 0.0106 (6) | −0.0004 (7) | 0.0027 (7) |
C11 | 0.0307 (9) | 0.0323 (9) | 0.0492 (11) | 0.0127 (7) | 0.0090 (8) | 0.0062 (8) |
C12 | 0.0246 (7) | 0.0282 (8) | 0.0324 (9) | 0.0102 (6) | −0.0018 (7) | 0.0026 (7) |
C13 | 0.0259 (7) | 0.0331 (8) | 0.0292 (9) | 0.0126 (7) | −0.0028 (7) | 0.0006 (7) |
C14 | 0.0316 (9) | 0.0334 (9) | 0.0422 (10) | 0.0152 (7) | 0.0045 (8) | 0.0038 (8) |
C15 | 0.0432 (10) | 0.0385 (10) | 0.0516 (12) | 0.0230 (9) | 0.0000 (9) | −0.0032 (9) |
C16 | 0.0408 (10) | 0.0552 (12) | 0.0475 (12) | 0.0263 (10) | 0.0019 (9) | −0.0101 (10) |
C17 | 0.0432 (11) | 0.0513 (12) | 0.0493 (13) | 0.0177 (10) | 0.0186 (10) | 0.0060 (10) |
C18 | 0.0424 (10) | 0.0369 (10) | 0.0456 (11) | 0.0157 (8) | 0.0133 (9) | 0.0078 (9) |
S1—C11 | 1.707 (2) | C7—C8 | 1.512 (2) |
S1—C10 | 1.7306 (17) | C8—C9 | 1.525 (2) |
N1—C1 | 1.460 (2) | C8—H8A | 0.9900 |
N1—C9 | 1.470 (2) | C8—H8B | 0.9900 |
N1—H1N | 0.92 (2) | C9—C10 | 1.501 (2) |
N2—C10 | 1.297 (2) | C9—H9 | 1.0000 |
N2—C12 | 1.390 (2) | C11—C12 | 1.361 (2) |
C1—C2 | 1.516 (2) | C11—H11 | 0.9500 |
C1—H1A | 0.9900 | C12—C13 | 1.475 (2) |
C1—H1B | 0.9900 | C13—C14 | 1.390 (2) |
C2—C7 | 1.397 (2) | C13—C18 | 1.393 (3) |
C2—C3 | 1.400 (2) | C14—C15 | 1.389 (3) |
C3—C4 | 1.380 (3) | C14—H14 | 0.9500 |
C3—H3 | 0.9500 | C15—C16 | 1.380 (3) |
C4—C5 | 1.387 (3) | C15—H15 | 0.9500 |
C4—H4 | 0.9500 | C16—C17 | 1.383 (3) |
C5—C6 | 1.386 (3) | C16—H16 | 0.9500 |
C5—H5 | 0.9500 | C17—C18 | 1.372 (3) |
C6—C7 | 1.396 (2) | C17—H17 | 0.9500 |
C6—H6 | 0.9500 | C18—H18 | 0.9500 |
C11—S1—C10 | 89.46 (9) | H8A—C8—H8B | 108.0 |
C1—N1—C9 | 110.51 (13) | N1—C9—C10 | 109.12 (13) |
C1—N1—H1N | 110.0 (13) | N1—C9—C8 | 112.02 (13) |
C9—N1—H1N | 106.0 (13) | C10—C9—C8 | 112.09 (13) |
C10—N2—C12 | 111.30 (14) | N1—C9—H9 | 107.8 |
N1—C1—C2 | 115.29 (14) | C10—C9—H9 | 107.8 |
N1—C1—H1A | 108.5 | C8—C9—H9 | 107.8 |
C2—C1—H1A | 108.5 | N2—C10—C9 | 125.27 (15) |
N1—C1—H1B | 108.5 | N2—C10—S1 | 114.34 (13) |
C2—C1—H1B | 108.5 | C9—C10—S1 | 120.36 (12) |
H1A—C1—H1B | 107.5 | C12—C11—S1 | 110.66 (14) |
C7—C2—C3 | 119.19 (16) | C12—C11—H11 | 124.7 |
C7—C2—C1 | 120.86 (14) | S1—C11—H11 | 124.7 |
C3—C2—C1 | 119.92 (15) | C11—C12—N2 | 114.22 (16) |
C4—C3—C2 | 120.90 (17) | C11—C12—C13 | 126.56 (16) |
C4—C3—H3 | 119.5 | N2—C12—C13 | 119.21 (14) |
C2—C3—H3 | 119.5 | C14—C13—C18 | 118.28 (17) |
C3—C4—C5 | 120.06 (17) | C14—C13—C12 | 120.88 (16) |
C3—C4—H4 | 120.0 | C18—C13—C12 | 120.83 (16) |
C5—C4—H4 | 120.0 | C15—C14—C13 | 120.51 (17) |
C6—C5—C4 | 119.54 (17) | C15—C14—H14 | 119.7 |
C6—C5—H5 | 120.2 | C13—C14—H14 | 119.7 |
C4—C5—H5 | 120.2 | C16—C15—C14 | 120.46 (19) |
C5—C6—C7 | 121.10 (17) | C16—C15—H15 | 119.8 |
C5—C6—H6 | 119.5 | C14—C15—H15 | 119.8 |
C7—C6—H6 | 119.5 | C15—C16—C17 | 119.16 (19) |
C6—C7—C2 | 119.21 (15) | C15—C16—H16 | 120.4 |
C6—C7—C8 | 120.20 (15) | C17—C16—H16 | 120.4 |
C2—C7—C8 | 120.58 (15) | C18—C17—C16 | 120.65 (19) |
C7—C8—C9 | 111.08 (13) | C18—C17—H17 | 119.7 |
C7—C8—H8A | 109.4 | C16—C17—H17 | 119.7 |
C9—C8—H8A | 109.4 | C17—C18—C13 | 120.93 (19) |
C7—C8—H8B | 109.4 | C17—C18—H18 | 119.5 |
C9—C8—H8B | 109.4 | C13—C18—H18 | 119.5 |
C9—N1—C1—C2 | −43.4 (2) | C8—C9—C10—N2 | 19.7 (2) |
N1—C1—C2—C7 | 12.8 (2) | N1—C9—C10—S1 | 73.07 (17) |
N1—C1—C2—C3 | −169.22 (16) | C8—C9—C10—S1 | −162.25 (13) |
C7—C2—C3—C4 | −0.7 (3) | C11—S1—C10—N2 | 0.18 (15) |
C1—C2—C3—C4 | −178.73 (16) | C11—S1—C10—C9 | −178.05 (15) |
C2—C3—C4—C5 | 0.3 (3) | C10—S1—C11—C12 | 0.02 (16) |
C3—C4—C5—C6 | 0.4 (3) | S1—C11—C12—N2 | −0.2 (2) |
C4—C5—C6—C7 | −0.8 (3) | S1—C11—C12—C13 | 179.92 (14) |
C5—C6—C7—C2 | 0.4 (3) | C10—N2—C12—C11 | 0.3 (2) |
C5—C6—C7—C8 | 179.40 (16) | C10—N2—C12—C13 | −179.78 (15) |
C3—C2—C7—C6 | 0.3 (2) | C11—C12—C13—C14 | 178.82 (19) |
C1—C2—C7—C6 | 178.32 (16) | N2—C12—C13—C14 | −1.0 (2) |
C3—C2—C7—C8 | −178.67 (15) | C11—C12—C13—C18 | −2.1 (3) |
C1—C2—C7—C8 | −0.6 (2) | N2—C12—C13—C18 | 178.05 (16) |
C6—C7—C8—C9 | −160.07 (15) | C18—C13—C14—C15 | −0.3 (3) |
C2—C7—C8—C9 | 18.9 (2) | C12—C13—C14—C15 | 178.84 (17) |
C1—N1—C9—C10 | −171.71 (14) | C13—C14—C15—C16 | 0.0 (3) |
C1—N1—C9—C8 | 63.57 (18) | C14—C15—C16—C17 | 0.1 (3) |
C7—C8—C9—N1 | −50.29 (18) | C15—C16—C17—C18 | 0.0 (3) |
C7—C8—C9—C10 | −173.34 (13) | C16—C17—C18—C13 | −0.2 (3) |
C12—N2—C10—C9 | 177.80 (16) | C14—C13—C18—C17 | 0.4 (3) |
C12—N2—C10—S1 | −0.32 (18) | C12—C13—C18—C17 | −178.8 (2) |
N1—C9—C10—N2 | −104.95 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11···N1i | 0.95 | 2.54 | 3.341 (3) | 142 |
Symmetry code: (i) −y+1, x−y+2, z−1/3. |
Experimental details
Crystal data | |
Chemical formula | C18H16N2S |
Mr | 292.39 |
Crystal system, space group | Trigonal, P32 |
Temperature (K) | 173 |
a, c (Å) | 16.223 (1), 4.8130 (3) |
V (Å3) | 1097.0 (1) |
Z | 3 |
Radiation type | Mo Kα |
µ (mm−1) | 0.22 |
Crystal size (mm) | 0.20 × 0.10 × 0.09 |
Data collection | |
Diffractometer | Bruker Kappa DUO APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2008) |
Tmin, Tmax | 0.958, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14735, 3676, 3205 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.084, 1.03 |
No. of reflections | 3676 |
No. of parameters | 194 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.23, −0.22 |
Absolute structure | Flack (1983), 1832 Friedel pairs |
Absolute structure parameter | −0.02 (6) |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11···N1i | 0.95 | 2.54 | 3.341 (3) | 142 |
Symmetry code: (i) −y+1, x−y+2, z−1/3. |
Acknowledgements
The authors thank Dr Hong Su of the University of Capetown for the data collection and structure
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Tetrahydroisoquinoline is a core structure in various natural and pharmaceutically active compounds, displaying a broad spectrum of activity. Molecules with a C1-symmetric tetrahydroisoquinoline backbone have been studied for various catalytic reactions such as allylic alkylation (Blanc et al.,2003), Henry reactions (Kawthekar et al., 2010), asymmetric hydrogenation reactions (Chakka et al.,2010; Peters et al., 2010) and Diels-Alder reactions (Naicker et al.,2010). The title compound is one of the ligands used for asymmetric Henry reaction, its' catalytic activity is currently under investigation. The chiral carbon (C9) has been assigned an S configuration from two-dimensional NMR measurements.
In the title compound, the piperidine ring of the tetrahydroisoquinolinone unit adopts a half chair (Fig 1). This hetrocyclic ring within similar structures displays either a half chair or half boat conformation (Naicker et al. 2011a; 2011b). From the crystal structure it is evident that the N-containing six membered ring assumes a half chair conformation [Q = 0.483 (2) Å, θ = 50.1 (2)° and ϕ = 321.8 (3)°]. The torsion angle for C1—N1—C9—C10 is -171.72 (14)°. From the plain formed by the atoms C1—C2—C7—C8—C9—N1 the maximum displacement from planarity for N1 is 0.297 Å and for C9 0.331 Å (Fig. 1). This is similar to our previously reported structures which also assume half chair conformations (Naicker et al., 2011a; 2011b). The crystal packing contains C—H···N contacts of distance 3.341 (3) Å (see Fig. 2) (Table 1). There is no π-π stacking within the crystal structure.