organic compounds
2-Amino-3-(hydroxymethyl)pyridinium 2-benzoylbenzoate monohydrate
aDepartment of Textile Engineering, Faculty of Engineering, Pamukkale University, TR-20070 Kınıklı Denizli, Turkey, bDepartment of Physics, Faculty of Arts and Science, Ondokuz Mayıs University, TR-55139 Kurupelit Samsun, Turkey, and cChemistry Programme, Denizli Higher Vocational School, Pamukkale University, TR-20159 Denizli, Turkey
*Correspondence e-mail: orhanb@omu.edu.tr
In the title hydrated salt, C6H9N2O+·C14H9O3−·H2O, the dihedral angle between the benzene rings of the 2-benzoylbenzoate anion is 82.04 (14)°, while the angles between the aromatic ring of the pyridinium cation and each of the benzene rings of the anion are 4.42 (14) and 82.04 (14)°. In the crystal, molecules are linked by N—H⋯O and O—H⋯O hydrogen bonds, generating a three-dimensional network with R22(8), R66(16) and R44(6) motifs. The crystal packing is further stabilized by two π–π interactions, one between pyridinium rings, and another between the benzene benzoate and pyridinium rings of neighbouring molecules, with centroid-to-centroid distances of 3.559 (2) and 3.606 (2) Å, respectively.
Related literature
For general background, see: Lehn (1990); Mrozek & Glowiak (2004); Yang et al. (1995); Goswami & Ghosh (1997); Goswami et al. (1998); Lah et al. (2001); Hong & Sun (2008). For related structures, see: Büyükgüngör & Odabaşoğlu (2002); Büyükgüngör et al. (2004); Odabaşoğlu & Büyükgüngör (2007, 2008); Odabaşoğlu et al. (2003b,c). For the synthesis of the title compound, see: Odabaşoğlu et al. (2003a). For ring-motif details, see: Bernstein et al. (1995); Etter (1990).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2002); cell X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812005612/lr2047sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812005612/lr2047Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812005612/lr2047Isup3.cml
The title compound is obtained by reaction of 2-Amino-3-hydroxymethylpyridine and 2-benzoylbenzoic acid under the experimental condition previously described (Odabaşoǧlu et al. 2003a). Suitable crystal of the title compound were obtained by slow evaporation from a solution of the reaction mixture in ethanol.
H atoms bonded to O were located in a difference map and refined isotropically. Constrained C—H and N—H bond lengths and isotropic U parameters: 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic C—H; 0.97 Å and Uiso(H) = 1.2Ueq(C) for methylene C—H; 0.86 Å and Uiso(H) = 1.2Ueq(N) for N—H.
Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. A view of (I). Displacement ellipsoids are drawn at the 40% probability level. | |
Fig. 2. A partial view of the packing of (I), showing the formation of O—H···O bonded R66(16) motif [Symmetry code:(i) 1 - x, 1 - y, 1 - z] | |
Fig. 3. A partial view of the packing of (I) with hydrogen bonded R22(8) and R44(16) motifs [Symmetry codes:(i) 3/2 - x, 3/2 - y, 1 - z; (ii) x + 1/2, y - 1/2, z]. | |
Fig. 4. A partial view of the packing of (I), showing the formation of π–π interactions. [Symmetry codes:(i) 1 - x, 3/2 - y, 1 - z; (ii) 1 - x, 1 - y, 1 - z]. |
C6H9N2O+·C14H9O3−·H2O | F(000) = 1552 |
Mr = 368.38 | Dx = 1.312 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 8608 reflections |
a = 15.9259 (11) Å | θ = 1.5–26.1° |
b = 8.4898 (4) Å | µ = 0.10 mm−1 |
c = 27.6362 (19) Å | T = 296 K |
β = 93.468 (5)° | Block, colourless |
V = 3729.8 (4) Å3 | 0.35 × 0.30 × 0.26 mm |
Z = 8 |
Stoe IPDS 2 diffractometer | 3523 independent reflections |
Radiation source: fine-focus sealed tube | 1792 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.117 |
Detector resolution: 6.67 pixels mm-1 | θmax = 25.7°, θmin = 1.5° |
ω–scan rotation method | h = −19→15 |
Absorption correction: integration (X-RED; Stoe & Cie, 2002) | k = −9→10 |
Tmin = 0.967, Tmax = 0.976 | l = −33→33 |
9399 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.062 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.156 | w = 1/[σ2(Fo2) + (0.0625P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.95 | (Δ/σ)max < 0.001 |
3503 reflections | Δρmax = 0.18 e Å−3 |
254 parameters | Δρmin = −0.21 e Å−3 |
4 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0034 (5) |
C6H9N2O+·C14H9O3−·H2O | V = 3729.8 (4) Å3 |
Mr = 368.38 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.9259 (11) Å | µ = 0.10 mm−1 |
b = 8.4898 (4) Å | T = 296 K |
c = 27.6362 (19) Å | 0.35 × 0.30 × 0.26 mm |
β = 93.468 (5)° |
Stoe IPDS 2 diffractometer | 3523 independent reflections |
Absorption correction: integration (X-RED; Stoe & Cie, 2002) | 1792 reflections with I > 2σ(I) |
Tmin = 0.967, Tmax = 0.976 | Rint = 0.117 |
9399 measured reflections |
R[F2 > 2σ(F2)] = 0.062 | 4 restraints |
wR(F2) = 0.156 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | Δρmax = 0.18 e Å−3 |
3503 reflections | Δρmin = −0.21 e Å−3 |
254 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.40651 (19) | 0.3876 (3) | 0.66050 (9) | 0.0562 (7) | |
C2 | 0.4022 (2) | 0.2387 (4) | 0.68081 (10) | 0.0692 (9) | |
H2 | 0.3510 | 0.2001 | 0.6902 | 0.083* | |
C3 | 0.4738 (3) | 0.1478 (4) | 0.68716 (11) | 0.0788 (10) | |
H3 | 0.4705 | 0.0477 | 0.7006 | 0.095* | |
C4 | 0.5489 (2) | 0.2034 (4) | 0.67396 (11) | 0.0755 (10) | |
H4 | 0.5970 | 0.1420 | 0.6788 | 0.091* | |
C5 | 0.5540 (2) | 0.3510 (4) | 0.65331 (10) | 0.0653 (8) | |
H5 | 0.6058 | 0.3881 | 0.6443 | 0.078* | |
C6 | 0.48330 (18) | 0.4444 (3) | 0.64586 (8) | 0.0542 (7) | |
C7 | 0.4857 (2) | 0.5976 (4) | 0.61819 (9) | 0.0591 (8) | |
C8 | 0.32807 (19) | 0.4875 (4) | 0.65745 (9) | 0.0595 (8) | |
C9 | 0.32802 (18) | 0.6335 (4) | 0.68740 (9) | 0.0553 (7) | |
C10 | 0.27551 (19) | 0.7577 (4) | 0.67355 (11) | 0.0652 (8) | |
H10 | 0.2441 | 0.7532 | 0.6441 | 0.078* | |
C11 | 0.2694 (2) | 0.8874 (4) | 0.70280 (13) | 0.0767 (10) | |
H11 | 0.2342 | 0.9705 | 0.6931 | 0.092* | |
C12 | 0.3152 (2) | 0.8940 (5) | 0.74628 (13) | 0.0819 (10) | |
H12 | 0.3106 | 0.9812 | 0.7663 | 0.098* | |
C13 | 0.3682 (2) | 0.7722 (5) | 0.76063 (11) | 0.0818 (10) | |
H13 | 0.3990 | 0.7771 | 0.7903 | 0.098* | |
C14 | 0.3757 (2) | 0.6423 (4) | 0.73080 (10) | 0.0689 (9) | |
H14 | 0.4126 | 0.5613 | 0.7400 | 0.083* | |
O1 | 0.55266 (16) | 0.6753 (3) | 0.61989 (8) | 0.0810 (7) | |
O2 | 0.41975 (14) | 0.6353 (2) | 0.59401 (7) | 0.0673 (6) | |
O3 | 0.26539 (15) | 0.4449 (3) | 0.63399 (8) | 0.0821 (7) | |
C15 | 0.5523 (2) | 0.8106 (3) | 0.45397 (9) | 0.0591 (8) | |
C16 | 0.5503 (2) | 0.9647 (4) | 0.43366 (9) | 0.0580 (7) | |
C17 | 0.4025 (2) | 0.9701 (5) | 0.43705 (11) | 0.0734 (9) | |
H17 | 0.3523 | 1.0245 | 0.4307 | 0.088* | |
C18 | 0.4010 (2) | 0.8251 (5) | 0.45727 (12) | 0.0778 (10) | |
H18 | 0.3508 | 0.7790 | 0.4653 | 0.093* | |
C19 | 0.4776 (2) | 0.7474 (4) | 0.46559 (10) | 0.0730 (9) | |
H19 | 0.4776 | 0.6480 | 0.4797 | 0.088* | |
C20 | 0.6347 (2) | 0.7288 (4) | 0.46227 (11) | 0.0695 (9) | |
H20A | 0.6627 | 0.7266 | 0.4321 | 0.083* | |
H20B | 0.6698 | 0.7890 | 0.4855 | 0.083* | |
N1 | 0.47595 (17) | 1.0371 (3) | 0.42587 (8) | 0.0639 (7) | |
H1 | 0.4748 | 1.1297 | 0.4133 | 0.077* | |
N2 | 0.61927 (17) | 1.0410 (3) | 0.42175 (8) | 0.0683 (7) | |
H2A | 0.6152 | 1.1340 | 0.4094 | 0.082* | |
H2B | 0.6678 | 0.9973 | 0.4264 | 0.082* | |
O4 | 0.62787 (17) | 0.5725 (3) | 0.47963 (7) | 0.0814 (7) | |
H4A | 0.619 (3) | 0.514 (4) | 0.4545 (11) | 0.122* | |
O5 | 0.70194 (16) | 0.5481 (4) | 0.57409 (9) | 0.0921 (8) | |
H5A | 0.673 (3) | 0.560 (5) | 0.5473 (9) | 0.138* | |
H5B | 0.682 (3) | 0.614 (5) | 0.5941 (12) | 0.138* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0573 (19) | 0.0569 (18) | 0.0540 (14) | 0.0035 (15) | −0.0003 (12) | −0.0019 (13) |
C2 | 0.071 (2) | 0.064 (2) | 0.0729 (18) | −0.0044 (19) | 0.0066 (16) | 0.0111 (15) |
C3 | 0.099 (3) | 0.065 (2) | 0.0708 (19) | 0.008 (2) | −0.0016 (18) | 0.0184 (16) |
C4 | 0.077 (3) | 0.077 (2) | 0.0709 (18) | 0.019 (2) | −0.0068 (17) | 0.0096 (17) |
C5 | 0.060 (2) | 0.073 (2) | 0.0624 (16) | 0.0054 (18) | −0.0011 (14) | 0.0028 (15) |
C6 | 0.0581 (19) | 0.0530 (17) | 0.0508 (13) | 0.0011 (16) | −0.0013 (12) | 0.0000 (12) |
C7 | 0.060 (2) | 0.065 (2) | 0.0524 (14) | −0.0022 (18) | 0.0044 (14) | −0.0041 (13) |
C8 | 0.0519 (19) | 0.069 (2) | 0.0577 (15) | −0.0028 (16) | 0.0015 (14) | 0.0013 (14) |
C9 | 0.0474 (17) | 0.0605 (18) | 0.0587 (15) | −0.0024 (15) | 0.0077 (12) | −0.0002 (13) |
C10 | 0.0555 (19) | 0.070 (2) | 0.0700 (17) | 0.0042 (18) | 0.0025 (14) | −0.0030 (16) |
C11 | 0.064 (2) | 0.065 (2) | 0.102 (3) | 0.0034 (18) | 0.0106 (18) | −0.0143 (18) |
C12 | 0.077 (3) | 0.080 (2) | 0.090 (2) | −0.004 (2) | 0.0145 (19) | −0.0252 (19) |
C13 | 0.086 (3) | 0.098 (3) | 0.0616 (17) | −0.011 (2) | 0.0015 (17) | −0.0127 (19) |
C14 | 0.072 (2) | 0.072 (2) | 0.0623 (17) | 0.0015 (18) | −0.0006 (15) | 0.0027 (16) |
O1 | 0.0715 (16) | 0.0775 (16) | 0.0936 (15) | −0.0159 (14) | 0.0010 (12) | 0.0102 (12) |
O2 | 0.0696 (15) | 0.0594 (13) | 0.0715 (11) | 0.0024 (11) | −0.0063 (11) | 0.0074 (10) |
O3 | 0.0630 (15) | 0.0853 (16) | 0.0960 (15) | 0.0009 (14) | −0.0107 (12) | −0.0177 (13) |
C15 | 0.074 (2) | 0.0551 (17) | 0.0477 (13) | −0.0081 (17) | −0.0011 (13) | 0.0004 (13) |
C16 | 0.065 (2) | 0.0583 (19) | 0.0498 (14) | −0.0058 (18) | 0.0005 (13) | −0.0007 (13) |
C17 | 0.064 (2) | 0.087 (3) | 0.0703 (18) | −0.003 (2) | 0.0061 (15) | −0.0099 (18) |
C18 | 0.073 (3) | 0.082 (3) | 0.0789 (19) | −0.019 (2) | 0.0095 (17) | −0.0024 (19) |
C19 | 0.088 (3) | 0.069 (2) | 0.0620 (17) | −0.013 (2) | 0.0050 (16) | 0.0052 (15) |
C20 | 0.088 (2) | 0.0548 (19) | 0.0637 (16) | −0.0058 (18) | −0.0081 (16) | 0.0051 (14) |
N1 | 0.0685 (18) | 0.0597 (16) | 0.0633 (13) | −0.0001 (15) | 0.0019 (12) | 0.0000 (12) |
N2 | 0.0722 (18) | 0.0584 (16) | 0.0741 (15) | −0.0010 (15) | 0.0036 (13) | 0.0116 (13) |
O4 | 0.118 (2) | 0.0554 (13) | 0.0679 (12) | −0.0034 (14) | −0.0144 (13) | 0.0085 (10) |
O5 | 0.0718 (17) | 0.113 (2) | 0.0909 (16) | 0.0031 (16) | 0.0009 (13) | 0.0184 (15) |
C1—C6 | 1.397 (4) | C13—C14 | 1.386 (5) |
C1—C2 | 1.386 (4) | C13—H13 | 0.9300 |
C1—C8 | 1.508 (4) | C14—H14 | 0.9300 |
C2—C3 | 1.379 (5) | C15—C19 | 1.361 (4) |
C2—H2 | 0.9300 | C15—C16 | 1.423 (4) |
C3—C4 | 1.356 (5) | C15—C20 | 1.491 (5) |
C3—H3 | 0.9300 | C16—N2 | 1.333 (4) |
C4—C5 | 1.382 (5) | C16—N1 | 1.340 (4) |
C4—H4 | 0.9300 | C17—N1 | 1.353 (4) |
C5—C6 | 1.383 (4) | C17—C18 | 1.353 (5) |
C5—H5 | 0.9300 | C17—H17 | 0.9300 |
C6—C7 | 1.511 (4) | C18—C19 | 1.393 (5) |
C7—O1 | 1.252 (4) | C18—H18 | 0.9300 |
C7—O2 | 1.252 (3) | C19—H19 | 0.9300 |
C8—O3 | 1.212 (3) | C20—O4 | 1.417 (4) |
C8—C9 | 1.490 (4) | C20—H20A | 0.9700 |
C9—C14 | 1.382 (4) | C20—H20B | 0.9700 |
C9—C10 | 1.385 (4) | N1—H1 | 0.8600 |
C10—C11 | 1.373 (4) | N2—H2A | 0.8600 |
C10—H10 | 0.9300 | N2—H2B | 0.8600 |
C11—C12 | 1.369 (5) | O4—H4A | 0.859 (19) |
C11—H11 | 0.9300 | O5—H5A | 0.858 (18) |
C12—C13 | 1.378 (5) | O5—H5B | 0.858 (19) |
C12—H12 | 0.9300 | ||
C6—C1—C2 | 119.8 (3) | C12—C13—C14 | 119.9 (3) |
C6—C1—C8 | 121.8 (3) | C12—C13—H13 | 120.0 |
C2—C1—C8 | 118.3 (3) | C14—C13—H13 | 120.0 |
C3—C2—C1 | 120.1 (3) | C9—C14—C13 | 119.8 (3) |
C3—C2—H2 | 120.0 | C9—C14—H14 | 120.1 |
C1—C2—H2 | 120.0 | C13—C14—H14 | 120.1 |
C4—C3—C2 | 120.4 (3) | C19—C15—C16 | 117.2 (3) |
C4—C3—H3 | 119.8 | C19—C15—C20 | 123.7 (3) |
C2—C3—H3 | 119.8 | C16—C15—C20 | 119.1 (3) |
C3—C4—C5 | 120.1 (3) | N2—C16—N1 | 118.1 (3) |
C3—C4—H4 | 119.9 | N2—C16—C15 | 123.1 (3) |
C5—C4—H4 | 119.9 | N1—C16—C15 | 118.8 (3) |
C4—C5—C6 | 120.9 (3) | N1—C17—C18 | 120.9 (3) |
C4—C5—H5 | 119.6 | N1—C17—H17 | 119.5 |
C6—C5—H5 | 119.6 | C18—C17—H17 | 119.5 |
C1—C6—C5 | 118.6 (3) | C17—C18—C19 | 117.5 (4) |
C1—C6—C7 | 119.6 (3) | C17—C18—H18 | 121.2 |
C5—C6—C7 | 121.6 (3) | C19—C18—H18 | 121.2 |
O1—C7—O2 | 124.8 (3) | C15—C19—C18 | 122.9 (3) |
O1—C7—C6 | 118.8 (3) | C15—C19—H19 | 118.5 |
O2—C7—C6 | 116.3 (3) | C18—C19—H19 | 118.5 |
O3—C8—C9 | 121.2 (3) | O4—C20—C15 | 113.8 (3) |
O3—C8—C1 | 121.0 (3) | O4—C20—H20A | 108.8 |
C9—C8—C1 | 117.7 (2) | C15—C20—H20A | 108.8 |
C14—C9—C10 | 119.3 (3) | O4—C20—H20B | 108.8 |
C14—C9—C8 | 120.5 (3) | C15—C20—H20B | 108.8 |
C10—C9—C8 | 120.0 (3) | H20A—C20—H20B | 107.7 |
C11—C10—C9 | 120.7 (3) | C16—N1—C17 | 122.6 (3) |
C11—C10—H10 | 119.6 | C16—N1—H1 | 118.7 |
C9—C10—H10 | 119.6 | C17—N1—H1 | 118.7 |
C12—C11—C10 | 119.7 (3) | C16—N2—H2A | 120.0 |
C12—C11—H11 | 120.1 | C16—N2—H2B | 120.0 |
C10—C11—H11 | 120.1 | H2A—N2—H2B | 120.0 |
C11—C12—C13 | 120.5 (3) | C20—O4—H4A | 106 (3) |
C11—C12—H12 | 119.8 | H5A—O5—H5B | 106 (3) |
C13—C12—H12 | 119.8 | ||
C6—C1—C2—C3 | 0.9 (4) | C1—C8—C9—C10 | 155.1 (3) |
C8—C1—C2—C3 | −175.8 (3) | C14—C9—C10—C11 | −1.1 (5) |
C1—C2—C3—C4 | 0.5 (5) | C8—C9—C10—C11 | 174.4 (3) |
C2—C3—C4—C5 | −1.0 (5) | C9—C10—C11—C12 | −0.4 (5) |
C3—C4—C5—C6 | 0.1 (5) | C10—C11—C12—C13 | 0.8 (5) |
C2—C1—C6—C5 | −1.7 (4) | C11—C12—C13—C14 | 0.3 (5) |
C8—C1—C6—C5 | 174.8 (2) | C10—C9—C14—C13 | 2.2 (5) |
C2—C1—C6—C7 | 172.4 (3) | C8—C9—C14—C13 | −173.3 (3) |
C8—C1—C6—C7 | −11.0 (4) | C12—C13—C14—C9 | −1.9 (5) |
C4—C5—C6—C1 | 1.2 (4) | C19—C15—C16—N2 | 178.5 (3) |
C4—C5—C6—C7 | −172.8 (3) | C20—C15—C16—N2 | −0.4 (4) |
C1—C6—C7—O1 | 155.1 (3) | C19—C15—C16—N1 | −1.8 (4) |
C5—C6—C7—O1 | −30.9 (4) | C20—C15—C16—N1 | 179.4 (2) |
C1—C6—C7—O2 | −26.5 (4) | N1—C17—C18—C19 | −0.7 (5) |
C5—C6—C7—O2 | 147.4 (3) | C16—C15—C19—C18 | 1.7 (4) |
C6—C1—C8—O3 | 121.8 (3) | C20—C15—C19—C18 | −179.6 (3) |
C2—C1—C8—O3 | −61.6 (4) | C17—C18—C19—C15 | −0.5 (5) |
C6—C1—C8—C9 | −63.1 (3) | C19—C15—C20—O4 | 5.2 (4) |
C2—C1—C8—C9 | 113.5 (3) | C16—C15—C20—O4 | −176.1 (2) |
O3—C8—C9—C14 | 145.7 (3) | N2—C16—N1—C17 | −179.5 (2) |
C1—C8—C9—C14 | −29.5 (4) | C15—C16—N1—C17 | 0.8 (4) |
O3—C8—C9—C10 | −29.8 (4) | C18—C17—N1—C16 | 0.5 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 | 1.93 | 2.775 (3) | 167 |
N1—H1···O2i | 0.86 | 2.62 | 3.303 (3) | 137 |
N2—H2A···O2i | 0.86 | 2.04 | 2.845 (3) | 156 |
N2—H2B···O5ii | 0.86 | 2.11 | 2.942 (4) | 162 |
O4—H4A···O2iii | 0.86 (2) | 1.92 (2) | 2.765 (3) | 168 (4) |
O5—H5A···O4 | 0.86 (2) | 1.96 (2) | 2.807 (3) | 167 (4) |
O5—H5B···O1 | 0.86 (2) | 2.28 (4) | 2.964 (4) | 136 (4) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+3/2, −y+3/2, −z+1; (iii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C6H9N2O+·C14H9O3−·H2O |
Mr | 368.38 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 296 |
a, b, c (Å) | 15.9259 (11), 8.4898 (4), 27.6362 (19) |
β (°) | 93.468 (5) |
V (Å3) | 3729.8 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.35 × 0.30 × 0.26 |
Data collection | |
Diffractometer | Stoe IPDS 2 diffractometer |
Absorption correction | Integration (X-RED; Stoe & Cie, 2002) |
Tmin, Tmax | 0.967, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9399, 3523, 1792 |
Rint | 0.117 |
(sin θ/λ)max (Å−1) | 0.609 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.156, 0.95 |
No. of reflections | 3503 |
No. of parameters | 254 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.21 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-RED32 (Stoe & Cie, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 | 1.93 | 2.775 (3) | 167.3 |
N1—H1···O2i | 0.86 | 2.62 | 3.303 (3) | 136.8 |
N2—H2A···O2i | 0.86 | 2.04 | 2.845 (3) | 156.1 |
N2—H2B···O5ii | 0.86 | 2.11 | 2.942 (4) | 162.3 |
O4—H4A···O2iii | 0.859 (19) | 1.92 (2) | 2.765 (3) | 168 (4) |
O5—H5A···O4 | 0.858 (18) | 1.963 (19) | 2.807 (3) | 167 (4) |
O5—H5B···O1 | 0.858 (19) | 2.28 (4) | 2.964 (4) | 136 (4) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+3/2, −y+3/2, −z+1; (iii) −x+1, −y+1, −z+1. |
Acknowledgements
The authors acknowledge the Faculty of Arts and Sciences, Ondokuz Mayıs University, Turkey, for the use of the Stoe IPDS II diffractometer (purchased under grant F.279 of the University Research Fund).
References
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Büyükgüngör, O. & Odabas˛ogˇlu, M. (2002). Acta Cryst. C58, o691–o692. Web of Science CSD CrossRef IUCr Journals Google Scholar
Büyükgüngör, O., Odabaşoğlu, M., Albayrak, Ç. & Lönnecke, P. (2004). Acta Cryst. C60, o470–o472. Web of Science CSD CrossRef IUCr Journals Google Scholar
Etter, M. C. (1990). Acc. Chem. Res. 23, 120–126. CrossRef CAS Web of Science Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Goswami, S. P. & Ghosh, K. (1997). Tetrahedron Lett. 38, 4503–4506. CrossRef CAS Web of Science Google Scholar
Goswami, S., Mahapatra, A. K., Nigam, G. D., Chinnakali, K. & Fun, H.-K. (1998). Acta Cryst. C54, 1301–1302. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Hong, K. H. & Sun, G. (2008). Carbohydr. Polym. 71, 598–605. CrossRef CAS Google Scholar
Lah, N., Giester, G., Lah, J., Segedin, P. & Leban, I. (2001). New J. Chem. 25, 753–759. Web of Science CSD CrossRef CAS Google Scholar
Lehn, J. M. (1990). Angew. Chem. Int. Ed. Engl. 29, 1304–1319. CrossRef Web of Science Google Scholar
Mrozek, R. & Glowiak, T. (2004). J. Chem. Crystallogr. 34, 153–157. Web of Science CSD CrossRef CAS Google Scholar
Odabas˛oǧlu, M., Albayrak, Ç., Büyükgüngör, O. & Lönnecke, P. (2003a). Acta Cryst. C59, o616–o619. Web of Science CSD CrossRef IUCr Journals Google Scholar
Odabaşoğlu, M. & Büyükgüngör, O. (2007). Acta Cryst. E63, o3197. Web of Science CSD CrossRef IUCr Journals Google Scholar
Odabaşoğlu, M. & Büyükgüngör, O. (2008). Acta Cryst. E64, o752–o753. Web of Science CrossRef IUCr Journals Google Scholar
Odabasoǧlu, M., Büyükgüngör, O. & Lönnecke, P. (2003b). Acta Cryst. C59, o51–o52. Web of Science CSD CrossRef IUCr Journals Google Scholar
Odabaşoğlu, M., Büyükgüngör, O., Turgut, G., Karadag, A., Bulak, E. & Lönnecke, P. (2003c). J. Mol. Struct. 648, 133–138. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Stoe & Cie (2002). X-AREA and X-RED32. Stoe & Cie GmbH, Darmstadt, Germany. Google Scholar
Yang, R. N., Wang, D. M., Hou, Y. M., Xue, B. Y., Jin, D. M., Chen, L. R. & Luo, B. S. (1995). Acta Chem. Scand. 49, 771–773. CAS Google Scholar
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The cotton fabrics which have been treated with benzophenone derivatives have powerful antibacterial properties against S. aureus and E. coli, and benzoylbenzoic acid derivatives treated cotton fabric demonstrated pesticide degradation ability, under UV irradiation (Hong & Sun, 2008). Furthermore, the copper(II) complexes of 2-aminopyridinium carboxylates have important properties in the applications of pharmaceuticals, fungicides, oxygen transfer, oxidative addition, homogenous hydrogenation, gas occlusion compounds, and solvent extractions processes (Yang et al., 1995; Lah et al., 2001). Hydrogen bonding plays a key role in molecular recognition (Goswami & Ghosh, 1997) and crystal engineering research (Goswami et al., 1998). The design of highly specific solid-state structures is of considerable significance in organic chemistry due to their important applications in the development of new optical, magnetic and electronic systems (Lehn, 1990). With this in mind, we had aimed the synthesis of (E)-2-(3-(hydroxymethyl)pyridin-2-ylimino)(phenyl) methyl)benzoic acid by reaction of 2-Amino-3-hydroxymethylpyridine and 2-benzoylbenzoic acid. But this compound can not be produced in the reaction conditions (Odabaşoǧlu et al., 2003a), instead the title compound was obtained (Scheme 1, Fig. 1).
The crystal structure of the title compound exhibit four N—H···O, three O—H···O hydrogen bonds and two π–π interactions. The C—H···O hydrogen bonds generate R66(16) hydrogen bonded motifs (Fig. 2) (Bernstein et al., 1995; Etter, 1990). Pyridinium ions, H2O molecules and carboxylate ions give edge fused R44(16) R22(8) hydrogen bonded rings by O—H···O and N—H···O hydrogen bonds (Fig. 3).
The dihedral angle between the benzene rings B:(C1–C6) and C:(C9–C14) of the 2-benzoylbenzoate fragment is 82.04 (14)°, while the angles between the aromatic ring A:(C15,C16,N1,C17,C18,C19) of the 2-amino-3-hydroxymethylpiridinium fragment with each of them are 4.42 (14)° and 82.04 (14)° respectively. There are also stacking interactions between the A–A and A–B rings of symmetry-related molecules, with centroid–centroid distance of 3.559 (2) Å and 3.606 (2) Å, respectively (Fig. 4). The bond distance and angles in (I) are expected value and consistent with the literature (Mrozek & Glowiak, 2004; Büyükgüngör & Odabaşoǧlu, 2002; Odabaşoğlu et al., 2003b,c; Büyükgüngör et al., 2004; Odabaşoğlu & Büyükgüngör, 2007, 2008).