organic compounds
3′,6′-Bis(diethylamino)-2-[(E)-2-(4-hydroxy-3-methoxybenzylideneamino)ethyl]spiro[isoindoline-1,9′-xanthen]-3-one ethanol monosolvate
aDepartment of Basic Science, Tianjin Agriculturial University, Tianjin Jinjing Road No. 22, Tianjin 300384, People's Republic of China
*Correspondence e-mail: weizhen-tjau@qq.com
In the title compound, C38H42N4O4·C2H6O, prepared via a spirolactam ring-formation reaction in a rhodamine dye, the xanthene ring system is approximately planar (r.m.s. deviation = 0.0014Å) and subtends dihedral angles of 88.10 (3) and 86.92 (4)° with the spirolactam (r.m.s. deviations = 0.0012 Å) and benzene rings, respectively. The consists of chains parallel to [-101], formed via O—H⋯O interactions.
Related literature
For related structures and background to rhodamine-based dyes, see: Xu et al.(2010a,b); Zhang et al. (2008); Tian & Peng (2008); Kwon et al. (2005); Wu et al.(2007).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2008); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: CrystalStructure (Rigaku, 2008).
Supporting information
10.1107/S1600536812016741/bg2444sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812016741/bg2444Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812016741/bg2444Isup3.cml
N-(rhodamine-6 G)lactam-ethylenediamine (5m mol) was dissolved in 50 ml of ethanol, followed by addition of 3-methoxy-4-hydroxybenzaldehyde(5m mol). The solution was stirred and refluxed for 10 h. The white precipitate was filtrated and disolved in ethanol. Single crystals suitable for X-ray measurements were obtained at room temperature by slow evaporation of this solution.
All H atoms were seen in the final diffreence map, but further replaced at their expected positions and treated as riding on their parent atoms, with C—H = 0.93 Å for the aromatic, 0.96 Å for the methyl and C—H= 0.97 Å for methylene H atoms, and O—H: 0.84Å. In al cases Uiso(H)= x×Ueq(Host) with x = 1.2 except for methyl groups in which x = 1.5.
Data collection: CrystalClear (Rigaku, 2008); cell
CrystalClear (Rigaku, 2008); data reduction: CrystalClear (Rigaku, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: CrystalStructure (Rigaku, 2008).C38H42N4O4·C2H6O | F(000) = 1424 |
Mr = 664.82 | Dx = 1.218 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 10662 reflections |
a = 16.674 (4) Å | θ = 1.7–27.9° |
b = 12.197 (3) Å | µ = 0.08 mm−1 |
c = 17.936 (4) Å | T = 113 K |
β = 96.445 (4)° | Prism, colourless |
V = 3624.5 (15) Å3 | 0.20 × 0.12 × 0.10 mm |
Z = 4 |
Rigaku Saturn724+ diffractometer | 8576 independent reflections |
Radiation source: fine-focus sealed tube | 7385 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
Detector resolution: 28.5714 pixels mm-1 | θmax = 27.8°, θmin = 1.6° |
profile data from ω–scans | h = −21→20 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) | k = −16→15 |
Tmin = 0.984, Tmax = 0.992 | l = −23→22 |
45486 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.119 | H-atom parameters constrained |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0532P)2 + 0.5173P] where P = (Fo2 + 2Fc2)/3 |
8576 reflections | (Δ/σ)max < 0.001 |
450 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C38H42N4O4·C2H6O | V = 3624.5 (15) Å3 |
Mr = 664.82 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 16.674 (4) Å | µ = 0.08 mm−1 |
b = 12.197 (3) Å | T = 113 K |
c = 17.936 (4) Å | 0.20 × 0.12 × 0.10 mm |
β = 96.445 (4)° |
Rigaku Saturn724+ diffractometer | 8576 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) | 7385 reflections with I > 2σ(I) |
Tmin = 0.984, Tmax = 0.992 | Rint = 0.043 |
45486 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.119 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.32 e Å−3 |
8576 reflections | Δρmin = −0.21 e Å−3 |
450 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.70816 (5) | 0.41422 (7) | 0.34461 (6) | 0.0243 (2) | |
O2 | 0.45673 (6) | 0.76065 (8) | 0.19829 (5) | 0.0257 (2) | |
O3 | 0.72460 (6) | 0.76249 (8) | −0.25561 (5) | 0.0281 (2) | |
H3 | 0.7427 | 0.7031 | −0.2705 | 0.042* | |
O4 | 0.70162 (6) | 0.56284 (8) | −0.19741 (5) | 0.0284 (2) | |
N1 | 0.91108 (7) | 0.68357 (10) | 0.39924 (7) | 0.0279 (3) | |
N2 | 0.53054 (7) | 0.10821 (9) | 0.31672 (7) | 0.0238 (3) | |
N3 | 0.54525 (6) | 0.62774 (9) | 0.24766 (6) | 0.0171 (2) | |
N4 | 0.66575 (7) | 0.64858 (11) | 0.08517 (7) | 0.0296 (3) | |
C1 | 0.72358 (8) | 0.52500 (10) | 0.35283 (7) | 0.0185 (3) | |
C2 | 0.80483 (8) | 0.55002 (11) | 0.37132 (7) | 0.0210 (3) | |
H2 | 0.8432 | 0.4923 | 0.3787 | 0.025* | |
C3 | 0.83095 (8) | 0.65951 (11) | 0.37922 (7) | 0.0217 (3) | |
C4 | 0.77103 (8) | 0.74200 (11) | 0.36664 (8) | 0.0239 (3) | |
H4A | 0.7862 | 0.8171 | 0.3700 | 0.029* | |
C5 | 0.69080 (8) | 0.71404 (11) | 0.34955 (7) | 0.0215 (3) | |
H5 | 0.6519 | 0.7711 | 0.3423 | 0.026* | |
C6 | 0.66416 (7) | 0.60495 (10) | 0.34241 (7) | 0.0171 (3) | |
C7 | 0.57572 (7) | 0.57688 (10) | 0.32152 (7) | 0.0168 (3) | |
C8 | 0.56436 (7) | 0.45356 (10) | 0.31992 (7) | 0.0172 (3) | |
C9 | 0.48720 (8) | 0.40554 (11) | 0.30829 (7) | 0.0197 (3) | |
H9 | 0.4414 | 0.4522 | 0.3007 | 0.024* | |
C10 | 0.47538 (8) | 0.29366 (11) | 0.30742 (7) | 0.0209 (3) | |
H10 | 0.4220 | 0.2653 | 0.2997 | 0.025* | |
C11 | 0.54168 (8) | 0.22038 (10) | 0.31793 (7) | 0.0193 (3) | |
C12 | 0.61892 (8) | 0.26706 (10) | 0.32955 (7) | 0.0200 (3) | |
H12 | 0.6650 | 0.2209 | 0.3368 | 0.024* | |
C13 | 0.62862 (7) | 0.38069 (10) | 0.33055 (7) | 0.0181 (3) | |
C14 | 0.96754 (8) | 0.59920 (12) | 0.42960 (8) | 0.0268 (3) | |
H14A | 0.9384 | 0.5463 | 0.4586 | 0.032* | |
H14B | 1.0101 | 0.6340 | 0.4648 | 0.032* | |
C15 | 1.00743 (9) | 0.53699 (15) | 0.37037 (9) | 0.0380 (4) | |
H15A | 0.9662 | 0.4977 | 0.3374 | 0.057* | |
H15B | 1.0462 | 0.4843 | 0.3948 | 0.057* | |
H15C | 1.0356 | 0.5888 | 0.3406 | 0.057* | |
C16 | 0.94234 (9) | 0.79470 (13) | 0.39605 (9) | 0.0361 (4) | |
H16A | 0.9114 | 0.8341 | 0.3540 | 0.043* | |
H16B | 0.9993 | 0.7913 | 0.3855 | 0.043* | |
C17 | 0.93788 (13) | 0.85921 (15) | 0.46778 (11) | 0.0575 (6) | |
H17A | 0.8812 | 0.8693 | 0.4760 | 0.086* | |
H17B | 0.9634 | 0.9310 | 0.4635 | 0.086* | |
H17C | 0.9661 | 0.8190 | 0.5102 | 0.086* | |
C18 | 0.59972 (9) | 0.03336 (11) | 0.32402 (8) | 0.0277 (3) | |
H18A | 0.6422 | 0.0644 | 0.2959 | 0.033* | |
H18B | 0.5826 | −0.0373 | 0.3002 | 0.033* | |
C19 | 0.63582 (10) | 0.01127 (14) | 0.40393 (9) | 0.0370 (4) | |
H19A | 0.6489 | 0.0810 | 0.4296 | 0.055* | |
H19B | 0.6851 | −0.0324 | 0.4035 | 0.055* | |
H19C | 0.5968 | −0.0291 | 0.4304 | 0.055* | |
C20 | 0.45004 (9) | 0.06076 (11) | 0.31775 (8) | 0.0270 (3) | |
H20A | 0.4513 | −0.0164 | 0.3007 | 0.032* | |
H20B | 0.4117 | 0.1010 | 0.2815 | 0.032* | |
C21 | 0.41881 (10) | 0.06364 (13) | 0.39453 (9) | 0.0366 (4) | |
H21A | 0.4540 | 0.0192 | 0.4300 | 0.055* | |
H21B | 0.3638 | 0.0340 | 0.3904 | 0.055* | |
H21C | 0.4185 | 0.1395 | 0.4125 | 0.055* | |
C22 | 0.52088 (7) | 0.63452 (10) | 0.37207 (7) | 0.0169 (3) | |
C23 | 0.51696 (8) | 0.62006 (11) | 0.44828 (7) | 0.0216 (3) | |
H23 | 0.5518 | 0.5701 | 0.4767 | 0.026* | |
C24 | 0.46017 (9) | 0.68132 (12) | 0.48185 (8) | 0.0261 (3) | |
H24 | 0.4563 | 0.6729 | 0.5340 | 0.031* | |
C25 | 0.40883 (8) | 0.75484 (12) | 0.44026 (8) | 0.0263 (3) | |
H25 | 0.3702 | 0.7950 | 0.4643 | 0.032* | |
C26 | 0.41351 (8) | 0.76991 (11) | 0.36424 (8) | 0.0228 (3) | |
H26 | 0.3791 | 0.8204 | 0.3358 | 0.027* | |
C27 | 0.47024 (7) | 0.70856 (10) | 0.33102 (7) | 0.0181 (3) | |
C28 | 0.48748 (7) | 0.70542 (10) | 0.25194 (7) | 0.0188 (3) | |
C29 | 0.57599 (8) | 0.59905 (11) | 0.17751 (7) | 0.0216 (3) | |
H29A | 0.5332 | 0.6123 | 0.1356 | 0.026* | |
H29B | 0.5889 | 0.5198 | 0.1781 | 0.026* | |
C30 | 0.65106 (9) | 0.66352 (14) | 0.16326 (8) | 0.0326 (4) | |
H30A | 0.6431 | 0.7423 | 0.1735 | 0.039* | |
H30B | 0.6982 | 0.6372 | 0.1971 | 0.039* | |
C31 | 0.67072 (8) | 0.73611 (13) | 0.04736 (8) | 0.0269 (3) | |
H31 | 0.6655 | 0.8039 | 0.0724 | 0.032* | |
C32 | 0.68390 (8) | 0.73984 (12) | −0.03207 (8) | 0.0237 (3) | |
C33 | 0.69533 (9) | 0.84087 (12) | −0.06541 (8) | 0.0266 (3) | |
H33 | 0.6938 | 0.9060 | −0.0366 | 0.032* | |
C34 | 0.70888 (8) | 0.84776 (12) | −0.14018 (8) | 0.0255 (3) | |
H34 | 0.7161 | 0.9172 | −0.1624 | 0.031* | |
C35 | 0.71177 (8) | 0.75289 (12) | −0.18223 (8) | 0.0228 (3) | |
C36 | 0.69883 (8) | 0.65032 (11) | −0.14962 (8) | 0.0222 (3) | |
C37 | 0.68563 (8) | 0.64348 (12) | −0.07481 (8) | 0.0234 (3) | |
H37 | 0.6778 | 0.5741 | −0.0526 | 0.028* | |
C38 | 0.67573 (10) | 0.45925 (12) | −0.17106 (9) | 0.0336 (4) | |
H38A | 0.7124 | 0.4361 | −0.1274 | 0.050* | |
H38B | 0.6761 | 0.4045 | −0.2110 | 0.050* | |
H38C | 0.6209 | 0.4663 | −0.1568 | 0.050* | |
O5 | 0.31286 (6) | 0.87055 (9) | 0.16462 (5) | 0.0278 (2) | |
H5A | 0.3581 | 0.8447 | 0.1812 | 0.042* | |
C39 | 0.29463 (9) | 0.84136 (13) | 0.08727 (8) | 0.0290 (3) | |
H39A | 0.3038 | 0.7619 | 0.0808 | 0.035* | |
H39B | 0.3306 | 0.8819 | 0.0566 | 0.035* | |
C40 | 0.20807 (9) | 0.86893 (15) | 0.06150 (9) | 0.0371 (4) | |
H40A | 0.1727 | 0.8273 | 0.0912 | 0.056* | |
H40B | 0.1959 | 0.8499 | 0.0084 | 0.056* | |
H40C | 0.1993 | 0.9476 | 0.0682 | 0.056* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0147 (5) | 0.0144 (5) | 0.0434 (6) | −0.0003 (4) | 0.0010 (4) | 0.0004 (4) |
O2 | 0.0234 (5) | 0.0265 (5) | 0.0263 (5) | 0.0051 (4) | −0.0012 (4) | 0.0095 (4) |
O3 | 0.0307 (6) | 0.0294 (6) | 0.0247 (5) | 0.0006 (4) | 0.0055 (4) | 0.0024 (4) |
O4 | 0.0348 (6) | 0.0240 (5) | 0.0277 (5) | −0.0042 (4) | 0.0088 (4) | −0.0042 (4) |
N1 | 0.0187 (6) | 0.0229 (6) | 0.0401 (7) | −0.0045 (5) | −0.0060 (5) | 0.0068 (5) |
N2 | 0.0228 (6) | 0.0165 (6) | 0.0320 (7) | −0.0016 (5) | 0.0029 (5) | −0.0009 (5) |
N3 | 0.0175 (5) | 0.0176 (5) | 0.0158 (5) | 0.0012 (4) | 0.0009 (4) | 0.0010 (4) |
N4 | 0.0242 (6) | 0.0417 (8) | 0.0238 (6) | −0.0021 (5) | 0.0067 (5) | −0.0018 (5) |
C1 | 0.0188 (6) | 0.0152 (6) | 0.0214 (7) | −0.0003 (5) | 0.0021 (5) | 0.0024 (5) |
C2 | 0.0175 (6) | 0.0188 (6) | 0.0263 (7) | 0.0017 (5) | 0.0005 (5) | 0.0029 (5) |
C3 | 0.0192 (7) | 0.0223 (7) | 0.0226 (7) | −0.0023 (5) | −0.0018 (5) | 0.0033 (5) |
C4 | 0.0241 (7) | 0.0163 (6) | 0.0297 (8) | −0.0033 (5) | −0.0039 (6) | 0.0017 (5) |
C5 | 0.0212 (7) | 0.0174 (6) | 0.0249 (7) | 0.0023 (5) | −0.0019 (5) | 0.0010 (5) |
C6 | 0.0165 (6) | 0.0177 (6) | 0.0168 (6) | 0.0002 (5) | 0.0008 (5) | 0.0010 (5) |
C7 | 0.0162 (6) | 0.0176 (6) | 0.0162 (6) | 0.0015 (5) | −0.0005 (5) | 0.0023 (5) |
C8 | 0.0182 (6) | 0.0173 (6) | 0.0160 (6) | 0.0001 (5) | 0.0016 (5) | 0.0009 (5) |
C9 | 0.0171 (6) | 0.0202 (6) | 0.0213 (7) | 0.0019 (5) | −0.0004 (5) | 0.0017 (5) |
C10 | 0.0174 (6) | 0.0211 (7) | 0.0235 (7) | −0.0029 (5) | −0.0003 (5) | 0.0000 (5) |
C11 | 0.0236 (7) | 0.0160 (6) | 0.0186 (7) | −0.0016 (5) | 0.0033 (5) | −0.0001 (5) |
C12 | 0.0173 (6) | 0.0167 (6) | 0.0264 (7) | 0.0025 (5) | 0.0037 (5) | 0.0004 (5) |
C13 | 0.0151 (6) | 0.0187 (6) | 0.0205 (7) | −0.0008 (5) | 0.0019 (5) | 0.0004 (5) |
C14 | 0.0183 (7) | 0.0326 (8) | 0.0282 (8) | −0.0019 (6) | −0.0029 (6) | 0.0057 (6) |
C15 | 0.0228 (8) | 0.0558 (11) | 0.0354 (9) | 0.0019 (7) | 0.0030 (7) | 0.0001 (8) |
C16 | 0.0276 (8) | 0.0291 (8) | 0.0482 (10) | −0.0131 (6) | −0.0102 (7) | 0.0110 (7) |
C17 | 0.0718 (14) | 0.0336 (10) | 0.0585 (12) | −0.0136 (9) | −0.0296 (10) | −0.0004 (9) |
C18 | 0.0293 (8) | 0.0163 (7) | 0.0375 (8) | 0.0002 (6) | 0.0038 (6) | −0.0029 (6) |
C19 | 0.0392 (9) | 0.0311 (8) | 0.0402 (9) | 0.0072 (7) | 0.0026 (7) | −0.0003 (7) |
C20 | 0.0267 (7) | 0.0185 (7) | 0.0357 (8) | −0.0064 (6) | 0.0037 (6) | −0.0004 (6) |
C21 | 0.0364 (9) | 0.0316 (9) | 0.0440 (10) | −0.0022 (7) | 0.0142 (7) | 0.0034 (7) |
C22 | 0.0150 (6) | 0.0153 (6) | 0.0202 (7) | −0.0015 (5) | 0.0009 (5) | −0.0009 (5) |
C23 | 0.0220 (7) | 0.0223 (7) | 0.0201 (7) | −0.0021 (5) | 0.0005 (5) | 0.0007 (5) |
C24 | 0.0282 (8) | 0.0307 (8) | 0.0202 (7) | −0.0042 (6) | 0.0068 (6) | −0.0033 (6) |
C25 | 0.0225 (7) | 0.0252 (7) | 0.0324 (8) | 0.0001 (6) | 0.0084 (6) | −0.0069 (6) |
C26 | 0.0172 (6) | 0.0189 (7) | 0.0323 (8) | 0.0001 (5) | 0.0026 (6) | −0.0005 (5) |
C27 | 0.0153 (6) | 0.0168 (6) | 0.0220 (7) | −0.0020 (5) | 0.0014 (5) | 0.0004 (5) |
C28 | 0.0143 (6) | 0.0169 (6) | 0.0244 (7) | −0.0020 (5) | −0.0004 (5) | 0.0021 (5) |
C29 | 0.0249 (7) | 0.0219 (7) | 0.0181 (7) | 0.0006 (5) | 0.0029 (5) | −0.0012 (5) |
C30 | 0.0277 (8) | 0.0497 (10) | 0.0211 (7) | −0.0089 (7) | 0.0060 (6) | −0.0027 (7) |
C31 | 0.0218 (7) | 0.0338 (8) | 0.0254 (8) | −0.0055 (6) | 0.0041 (6) | −0.0063 (6) |
C32 | 0.0187 (7) | 0.0281 (7) | 0.0243 (7) | −0.0015 (5) | 0.0025 (5) | −0.0015 (6) |
C33 | 0.0268 (7) | 0.0245 (7) | 0.0290 (8) | 0.0002 (6) | 0.0049 (6) | −0.0054 (6) |
C34 | 0.0242 (7) | 0.0219 (7) | 0.0304 (8) | 0.0005 (6) | 0.0031 (6) | 0.0023 (6) |
C35 | 0.0159 (6) | 0.0293 (7) | 0.0230 (7) | 0.0008 (5) | 0.0013 (5) | −0.0013 (6) |
C36 | 0.0177 (6) | 0.0246 (7) | 0.0243 (7) | −0.0006 (5) | 0.0023 (5) | −0.0034 (5) |
C37 | 0.0201 (7) | 0.0235 (7) | 0.0269 (8) | −0.0023 (5) | 0.0037 (6) | 0.0010 (5) |
C38 | 0.0377 (9) | 0.0229 (7) | 0.0413 (9) | −0.0045 (6) | 0.0099 (7) | −0.0035 (6) |
O5 | 0.0232 (5) | 0.0368 (6) | 0.0229 (5) | 0.0051 (4) | −0.0004 (4) | 0.0013 (4) |
C39 | 0.0315 (8) | 0.0323 (8) | 0.0229 (7) | 0.0023 (6) | 0.0019 (6) | 0.0018 (6) |
C40 | 0.0296 (8) | 0.0501 (10) | 0.0300 (8) | −0.0048 (7) | −0.0039 (7) | 0.0052 (7) |
O1—C1 | 1.3802 (15) | C18—C19 | 1.515 (2) |
O1—C13 | 1.3836 (15) | C18—H18A | 0.9900 |
O2—C28 | 1.2376 (15) | C18—H18B | 0.9900 |
O3—C35 | 1.3619 (17) | C19—H19A | 0.9800 |
O3—H3 | 0.8400 | C19—H19B | 0.9800 |
O4—C36 | 1.3726 (16) | C19—H19C | 0.9800 |
O4—C38 | 1.4324 (17) | C20—C21 | 1.527 (2) |
N1—C3 | 1.3756 (17) | C20—H20A | 0.9900 |
N1—C16 | 1.4556 (18) | C20—H20B | 0.9900 |
N1—C14 | 1.4583 (18) | C21—H21A | 0.9800 |
N2—C11 | 1.3805 (17) | C21—H21B | 0.9800 |
N2—C20 | 1.4636 (18) | C21—H21C | 0.9800 |
N2—C18 | 1.4653 (18) | C22—C23 | 1.3871 (18) |
N3—C28 | 1.3593 (16) | C22—C27 | 1.3895 (18) |
N3—C29 | 1.4537 (16) | C23—C24 | 1.3949 (19) |
N3—C7 | 1.4989 (16) | C23—H23 | 0.9500 |
N4—C31 | 1.2724 (19) | C24—C25 | 1.396 (2) |
N4—C30 | 1.4603 (18) | C24—H24 | 0.9500 |
C1—C6 | 1.3877 (18) | C25—C26 | 1.387 (2) |
C1—C2 | 1.3919 (18) | C25—H25 | 0.9500 |
C2—C3 | 1.4068 (18) | C26—C27 | 1.3916 (18) |
C2—H2 | 0.9500 | C26—H26 | 0.9500 |
C3—C4 | 1.4180 (19) | C27—C28 | 1.4790 (18) |
C4—C5 | 1.3812 (19) | C29—C30 | 1.524 (2) |
C4—H4A | 0.9500 | C29—H29A | 0.9900 |
C5—C6 | 1.4041 (18) | C29—H29B | 0.9900 |
C5—H5 | 0.9500 | C30—H30A | 0.9900 |
C6—C7 | 1.5193 (17) | C30—H30B | 0.9900 |
C7—C8 | 1.5159 (18) | C31—C32 | 1.466 (2) |
C7—C22 | 1.5292 (17) | C31—H31 | 0.9500 |
C8—C13 | 1.3887 (18) | C32—C33 | 1.392 (2) |
C8—C9 | 1.4077 (18) | C32—C37 | 1.4052 (19) |
C9—C10 | 1.3786 (18) | C33—C34 | 1.387 (2) |
C9—H9 | 0.9500 | C33—H33 | 0.9500 |
C10—C11 | 1.4176 (19) | C34—C35 | 1.3851 (19) |
C10—H10 | 0.9500 | C34—H34 | 0.9500 |
C11—C12 | 1.4021 (18) | C35—C36 | 1.4078 (19) |
C12—C13 | 1.3952 (18) | C36—C37 | 1.3865 (19) |
C12—H12 | 0.9500 | C37—H37 | 0.9500 |
C14—C15 | 1.518 (2) | C38—H38A | 0.9800 |
C14—H14A | 0.9900 | C38—H38B | 0.9800 |
C14—H14B | 0.9900 | C38—H38C | 0.9800 |
C15—H15A | 0.9800 | O5—C39 | 1.4317 (17) |
C15—H15B | 0.9800 | O5—H5A | 0.8400 |
C15—H15C | 0.9800 | C39—C40 | 1.503 (2) |
C16—C17 | 1.517 (3) | C39—H39A | 0.9900 |
C16—H16A | 0.9900 | C39—H39B | 0.9900 |
C16—H16B | 0.9900 | C40—H40A | 0.9800 |
C17—H17A | 0.9800 | C40—H40B | 0.9800 |
C17—H17B | 0.9800 | C40—H40C | 0.9800 |
C17—H17C | 0.9800 | ||
C1—O1—C13 | 118.17 (10) | C18—C19—H19C | 109.5 |
C35—O3—H3 | 109.5 | H19A—C19—H19C | 109.5 |
C36—O4—C38 | 116.56 (11) | H19B—C19—H19C | 109.5 |
C3—N1—C16 | 122.01 (12) | N2—C20—C21 | 114.11 (12) |
C3—N1—C14 | 120.95 (12) | N2—C20—H20A | 108.7 |
C16—N1—C14 | 116.92 (11) | C21—C20—H20A | 108.7 |
C11—N2—C20 | 120.91 (11) | N2—C20—H20B | 108.7 |
C11—N2—C18 | 120.85 (11) | C21—C20—H20B | 108.7 |
C20—N2—C18 | 117.79 (11) | H20A—C20—H20B | 107.6 |
C28—N3—C29 | 122.51 (11) | C20—C21—H21A | 109.5 |
C28—N3—C7 | 114.25 (10) | C20—C21—H21B | 109.5 |
C29—N3—C7 | 123.22 (10) | H21A—C21—H21B | 109.5 |
C31—N4—C30 | 115.75 (13) | C20—C21—H21C | 109.5 |
O1—C1—C6 | 123.49 (11) | H21A—C21—H21C | 109.5 |
O1—C1—C2 | 113.88 (11) | H21B—C21—H21C | 109.5 |
C6—C1—C2 | 122.62 (12) | C23—C22—C27 | 120.78 (12) |
C1—C2—C3 | 120.94 (12) | C23—C22—C7 | 128.55 (11) |
C1—C2—H2 | 119.5 | C27—C22—C7 | 110.66 (11) |
C3—C2—H2 | 119.5 | C22—C23—C24 | 117.82 (13) |
N1—C3—C2 | 120.63 (12) | C22—C23—H23 | 121.1 |
N1—C3—C4 | 122.44 (12) | C24—C23—H23 | 121.1 |
C2—C3—C4 | 116.92 (12) | C23—C24—C25 | 121.23 (13) |
C5—C4—C3 | 120.51 (12) | C23—C24—H24 | 119.4 |
C5—C4—H4A | 119.7 | C25—C24—H24 | 119.4 |
C3—C4—H4A | 119.7 | C26—C25—C24 | 120.78 (13) |
C4—C5—C6 | 122.88 (12) | C26—C25—H25 | 119.6 |
C4—C5—H5 | 118.6 | C24—C25—H25 | 119.6 |
C6—C5—H5 | 118.6 | C25—C26—C27 | 117.76 (12) |
C1—C6—C5 | 116.09 (12) | C25—C26—H26 | 121.1 |
C1—C6—C7 | 122.24 (11) | C27—C26—H26 | 121.1 |
C5—C6—C7 | 121.63 (11) | C22—C27—C26 | 121.63 (12) |
N3—C7—C8 | 111.39 (10) | C22—C27—C28 | 108.63 (11) |
N3—C7—C6 | 110.37 (10) | C26—C27—C28 | 129.73 (12) |
C8—C7—C6 | 110.12 (10) | O2—C28—N3 | 124.74 (12) |
N3—C7—C22 | 99.66 (10) | O2—C28—C27 | 128.57 (12) |
C8—C7—C22 | 112.68 (10) | N3—C28—C27 | 106.70 (11) |
C6—C7—C22 | 112.25 (10) | N3—C29—C30 | 113.39 (11) |
C13—C8—C9 | 115.62 (12) | N3—C29—H29A | 108.9 |
C13—C8—C7 | 122.65 (11) | C30—C29—H29A | 108.9 |
C9—C8—C7 | 121.73 (11) | N3—C29—H29B | 108.9 |
C10—C9—C8 | 122.73 (12) | C30—C29—H29B | 108.9 |
C10—C9—H9 | 118.6 | H29A—C29—H29B | 107.7 |
C8—C9—H9 | 118.6 | N4—C30—C29 | 109.02 (12) |
C9—C10—C11 | 120.95 (12) | N4—C30—H30A | 109.9 |
C9—C10—H10 | 119.5 | C29—C30—H30A | 109.9 |
C11—C10—H10 | 119.5 | N4—C30—H30B | 109.9 |
N2—C11—C12 | 121.63 (12) | C29—C30—H30B | 109.9 |
N2—C11—C10 | 121.41 (12) | H30A—C30—H30B | 108.3 |
C12—C11—C10 | 116.95 (12) | N4—C31—C32 | 124.72 (14) |
C13—C12—C11 | 120.57 (12) | N4—C31—H31 | 117.6 |
C13—C12—H12 | 119.7 | C32—C31—H31 | 117.6 |
C11—C12—H12 | 119.7 | C33—C32—C37 | 119.59 (13) |
O1—C13—C8 | 123.02 (11) | C33—C32—C31 | 119.17 (13) |
O1—C13—C12 | 113.79 (11) | C37—C32—C31 | 121.24 (13) |
C8—C13—C12 | 123.18 (12) | C34—C33—C32 | 120.92 (13) |
N1—C14—C15 | 113.99 (12) | C34—C33—H33 | 119.5 |
N1—C14—H14A | 108.8 | C32—C33—H33 | 119.5 |
C15—C14—H14A | 108.8 | C35—C34—C33 | 119.69 (13) |
N1—C14—H14B | 108.8 | C35—C34—H34 | 120.2 |
C15—C14—H14B | 108.8 | C33—C34—H34 | 120.2 |
H14A—C14—H14B | 107.6 | O3—C35—C34 | 118.25 (13) |
C14—C15—H15A | 109.5 | O3—C35—C36 | 121.73 (12) |
C14—C15—H15B | 109.5 | C34—C35—C36 | 119.98 (13) |
H15A—C15—H15B | 109.5 | O4—C36—C37 | 125.29 (13) |
C14—C15—H15C | 109.5 | O4—C36—C35 | 114.45 (12) |
H15A—C15—H15C | 109.5 | C37—C36—C35 | 120.26 (12) |
H15B—C15—H15C | 109.5 | C36—C37—C32 | 119.53 (13) |
N1—C16—C17 | 113.44 (14) | C36—C37—H37 | 120.2 |
N1—C16—H16A | 108.9 | C32—C37—H37 | 120.2 |
C17—C16—H16A | 108.9 | O4—C38—H38A | 109.5 |
N1—C16—H16B | 108.9 | O4—C38—H38B | 109.5 |
C17—C16—H16B | 108.9 | H38A—C38—H38B | 109.5 |
H16A—C16—H16B | 107.7 | O4—C38—H38C | 109.5 |
C16—C17—H17A | 109.5 | H38A—C38—H38C | 109.5 |
C16—C17—H17B | 109.5 | H38B—C38—H38C | 109.5 |
H17A—C17—H17B | 109.5 | C39—O5—H5A | 109.5 |
C16—C17—H17C | 109.5 | O5—C39—C40 | 109.53 (12) |
H17A—C17—H17C | 109.5 | O5—C39—H39A | 109.8 |
H17B—C17—H17C | 109.5 | C40—C39—H39A | 109.8 |
N2—C18—C19 | 114.87 (12) | O5—C39—H39B | 109.8 |
N2—C18—H18A | 108.6 | C40—C39—H39B | 109.8 |
C19—C18—H18A | 108.6 | H39A—C39—H39B | 108.2 |
N2—C18—H18B | 108.6 | C39—C40—H40A | 109.5 |
C19—C18—H18B | 108.6 | C39—C40—H40B | 109.5 |
H18A—C18—H18B | 107.5 | H40A—C40—H40B | 109.5 |
C18—C19—H19A | 109.5 | C39—C40—H40C | 109.5 |
C18—C19—H19B | 109.5 | H40A—C40—H40C | 109.5 |
H19A—C19—H19B | 109.5 | H40B—C40—H40C | 109.5 |
C13—O1—C1—C6 | −4.83 (18) | C3—N1—C14—C15 | 89.30 (16) |
C13—O1—C1—C2 | 176.30 (11) | C16—N1—C14—C15 | −94.71 (16) |
O1—C1—C2—C3 | 177.85 (11) | C3—N1—C16—C17 | 88.72 (18) |
C6—C1—C2—C3 | −1.0 (2) | C14—N1—C16—C17 | −87.22 (17) |
C16—N1—C3—C2 | 169.76 (13) | C11—N2—C18—C19 | 83.16 (16) |
C14—N1—C3—C2 | −14.5 (2) | C20—N2—C18—C19 | −89.23 (16) |
C16—N1—C3—C4 | −11.1 (2) | C11—N2—C20—C21 | −76.12 (16) |
C14—N1—C3—C4 | 164.66 (13) | C18—N2—C20—C21 | 96.26 (15) |
C1—C2—C3—N1 | 178.44 (12) | N3—C7—C22—C23 | 177.55 (12) |
C1—C2—C3—C4 | −0.7 (2) | C8—C7—C22—C23 | 59.38 (17) |
N1—C3—C4—C5 | −177.39 (13) | C6—C7—C22—C23 | −65.64 (17) |
C2—C3—C4—C5 | 1.8 (2) | N3—C7—C22—C27 | −1.82 (13) |
C3—C4—C5—C6 | −1.1 (2) | C8—C7—C22—C27 | −119.99 (12) |
O1—C1—C6—C5 | −177.09 (12) | C6—C7—C22—C27 | 114.99 (12) |
C2—C1—C6—C5 | 1.68 (19) | C27—C22—C23—C24 | 0.62 (19) |
O1—C1—C6—C7 | 0.63 (19) | C7—C22—C23—C24 | −178.69 (12) |
C2—C1—C6—C7 | 179.41 (12) | C22—C23—C24—C25 | 0.0 (2) |
C4—C5—C6—C1 | −0.6 (2) | C23—C24—C25—C26 | −0.7 (2) |
C4—C5—C6—C7 | −178.35 (12) | C24—C25—C26—C27 | 0.7 (2) |
C28—N3—C7—C8 | 122.41 (12) | C23—C22—C27—C26 | −0.62 (19) |
C29—N3—C7—C8 | −59.14 (15) | C7—C22—C27—C26 | 178.81 (11) |
C28—N3—C7—C6 | −114.94 (12) | C23—C22—C27—C28 | −179.42 (11) |
C29—N3—C7—C6 | 63.51 (15) | C7—C22—C27—C28 | 0.01 (14) |
C28—N3—C7—C22 | 3.28 (13) | C25—C26—C27—C22 | −0.06 (19) |
C29—N3—C7—C22 | −178.27 (11) | C25—C26—C27—C28 | 178.47 (13) |
C1—C6—C7—N3 | −119.49 (13) | C29—N3—C28—O2 | −1.7 (2) |
C5—C6—C7—N3 | 58.12 (15) | C7—N3—C28—O2 | 176.80 (12) |
C1—C6—C7—C8 | 3.90 (16) | C29—N3—C28—C27 | 178.09 (11) |
C5—C6—C7—C8 | −178.50 (11) | C7—N3—C28—C27 | −3.45 (14) |
C1—C6—C7—C22 | 130.32 (13) | C22—C27—C28—O2 | −178.20 (13) |
C5—C6—C7—C22 | −52.08 (16) | C26—C27—C28—O2 | 3.1 (2) |
N3—C7—C8—C13 | 118.10 (13) | C22—C27—C28—N3 | 2.06 (14) |
C6—C7—C8—C13 | −4.69 (16) | C26—C27—C28—N3 | −176.62 (13) |
C22—C7—C8—C13 | −130.87 (12) | C28—N3—C29—C30 | 92.73 (15) |
N3—C7—C8—C9 | −62.64 (15) | C7—N3—C29—C30 | −85.59 (15) |
C6—C7—C8—C9 | 174.57 (11) | C31—N4—C30—C29 | 124.69 (14) |
C22—C7—C8—C9 | 48.40 (16) | N3—C29—C30—N4 | −166.68 (12) |
C13—C8—C9—C10 | 0.04 (19) | C30—N4—C31—C32 | −178.98 (12) |
C7—C8—C9—C10 | −179.27 (12) | N4—C31—C32—C33 | −174.37 (14) |
C8—C9—C10—C11 | −0.4 (2) | N4—C31—C32—C37 | 5.3 (2) |
C20—N2—C11—C12 | 169.20 (12) | C37—C32—C33—C34 | −0.4 (2) |
C18—N2—C11—C12 | −3.0 (2) | C31—C32—C33—C34 | 179.27 (12) |
C20—N2—C11—C10 | −10.84 (19) | C32—C33—C34—C35 | −0.5 (2) |
C18—N2—C11—C10 | 177.01 (12) | C33—C34—C35—O3 | 179.54 (12) |
C9—C10—C11—N2 | −179.60 (12) | C33—C34—C35—C36 | 1.7 (2) |
C9—C10—C11—C12 | 0.36 (19) | C38—O4—C36—C37 | 10.84 (19) |
N2—C11—C12—C13 | −179.99 (12) | C38—O4—C36—C35 | −169.93 (12) |
C10—C11—C12—C13 | 0.04 (19) | O3—C35—C36—O4 | 0.98 (18) |
C1—O1—C13—C8 | 3.99 (18) | C34—C35—C36—O4 | 178.74 (12) |
C1—O1—C13—C12 | −174.79 (11) | O3—C35—C36—C37 | −179.74 (12) |
C9—C8—C13—O1 | −178.28 (12) | C34—C35—C36—C37 | −2.0 (2) |
C7—C8—C13—O1 | 1.02 (19) | O4—C36—C37—C32 | −179.74 (12) |
C9—C8—C13—C12 | 0.38 (19) | C35—C36—C37—C32 | 1.1 (2) |
C7—C8—C13—C12 | 179.69 (12) | C33—C32—C37—C36 | 0.1 (2) |
C11—C12—C13—O1 | 178.35 (11) | C31—C32—C37—C36 | −179.54 (12) |
C11—C12—C13—C8 | −0.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O5i | 0.84 | 1.96 | 2.7052 (15) | 148 |
O5—H5A···O2 | 0.84 | 1.93 | 2.7552 (14) | 166 |
Symmetry code: (i) x+1/2, −y+3/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C38H42N4O4·C2H6O |
Mr | 664.82 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 113 |
a, b, c (Å) | 16.674 (4), 12.197 (3), 17.936 (4) |
β (°) | 96.445 (4) |
V (Å3) | 3624.5 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.20 × 0.12 × 0.10 |
Data collection | |
Diffractometer | Rigaku Saturn724+ diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2008) |
Tmin, Tmax | 0.984, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 45486, 8576, 7385 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.656 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.119, 1.10 |
No. of reflections | 8576 |
No. of parameters | 450 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.21 |
Computer programs: CrystalClear (Rigaku, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), CrystalStructure (Rigaku, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O5i | 0.84 | 1.96 | 2.7052 (15) | 147.6 |
O5—H5A···O2 | 0.84 | 1.93 | 2.7552 (14) | 165.7 |
Symmetry code: (i) x+1/2, −y+3/2, z−1/2. |
Acknowledgements
The authors thank the Science Development Committee of Tianjin Agricultural University (research grant No. 2009 N02).
References
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Rhodamine-based dyes have been widely used for conjugation with biomolecules, owing to their excellent spectroscopic properties such as large molar extinction coefficient and high fluorescence quantum yields. Moreover, it is well known that many derivatives of Rhodamine undergo equilibrium between spirolactam and an open ring amide, and both conformations behave with different spectroscopic properties, for what Rhodamine-based dyes have been widely used as sensing materials (Kwon et al., 2005). Detailed information on their molecular and crystal structures is necessary to understand their photophysical and photochemical properties. In the title compound [(C38H42N4O4)], the xanthene and the spirolactam rings are almost planar (r.m.s. deviations from the mean plane, 0.0014Å and 0.0012 Å, respectively), with the former ring forming dihedral angles of 88.10 (3)° to the spirolactam ring and 86.92 (4)°. to the benzene ring. The crystal structure consists of one-dimensional chains parallel to [101], formed via O3—H3···O5, O5—H5A···O2 interactions (Table 1).