organic compounds
3,3′-Dicyclopentyl-1,1′-(1,3-phenylenedimethylene)dibenzimidazol-1-ium bis(hexafluorophosphate)
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C32H36N42+·2PF6−, the cation and the anions each have crystallographic twofold rotation symmetry. The benzimidazole ring is almost planar [r.m.s. deviation = 0.0161 (1) Å] and makes a dihedral angle of 5.77 (4)° with its symmetry-related component and a dihedral angle of 80.96 (5)° with the central benzene ring. The cyclopentyl ring adopts a half-chair conformation. In the crystal, molecules are linked into a three-dimensional network through C—H⋯F hydrogen bonds. A C—H⋯π interaction is also observed.
Related literature
For the biological activity of benzimidazole, see: Shaharyar et al. (2012); Mohan et al. (2011). For related structures, see: Haque et al. (2011, 2012). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S160053681202274X/rz2756sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681202274X/rz2756Isup2.hkl
Supporting information file. DOI: 10.1107/S160053681202274X/rz2756Isup3.cml
To a solution of 1,3-(bromomethyl)benzene (2.64 g, 0.01 mol) in 50 ml of 1,4-dioxane, 1-cyclopentyl-1H-benzolimidazole (3.73 g, 0.02 mol) was added. The mixture was refluxed at 373 K for 24 h. The resulting brown thick liquid product was decanted, washed with fresh 1,4-dioxane (3 × 5 ml) and converted directly to its hexafluorophosphate counterpart by metathesis reaction using KPF6 (3.60 g, 0.02 mol) in 40 ml of methanol/water. The white precipitate was collected, washed with fresh methanol to give the title product as a white solid (4.66 g, 97%). M.p. 518–519 K. Crystals suitable for X-ray diffraction studies were obtained by slow evaporation of the salt solution in a mixture of acetonitrile/methanol (1:1 v/v) at ambient temperature.
All H atoms attached to C atoms were fixed geometrically and refined as riding with C—H = 0.95–1.00 Å and Uiso(H) = 1.2Ueq(C).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids. Hydrogen atoms are shown as spheres of arbitrary radius. Atoms with suffix A, B and C are generated by the symmetry operators (-x, y, 1/2-z), (x, -y, 1-z) and (-x, y, 3/2-z), respectively. | |
Fig. 2. The crystal packing of the title compound. Dashed lines indicate hydrogen bonds. H atoms not involved in hydrogen bonding interactions have been omitted for clarity. |
C32H36N42+·2PF6− | F(000) = 1576 |
Mr = 766.59 | Dx = 1.560 Mg m−3 |
Orthorhombic, C2221 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C 2c 2 | Cell parameters from 9943 reflections |
a = 7.0699 (1) Å | θ = 2.2–29.9° |
b = 20.4852 (3) Å | µ = 0.23 mm−1 |
c = 22.5416 (3) Å | T = 100 K |
V = 3264.66 (8) Å3 | Block, colourless |
Z = 4 | 0.44 × 0.13 × 0.11 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 4758 independent reflections |
Radiation source: fine-focus sealed tube | 4407 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ and ω scans | θmax = 30.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −9→9 |
Tmin = 0.903, Tmax = 0.974 | k = −28→28 |
19037 measured reflections | l = −28→31 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.032 | H-atom parameters constrained |
wR(F2) = 0.078 | w = 1/[σ2(Fo2) + (0.0411P)2 + 1.0871P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
4758 reflections | Δρmax = 0.29 e Å−3 |
228 parameters | Δρmin = −0.24 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 2086 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.02 (7) |
C32H36N42+·2PF6− | V = 3264.66 (8) Å3 |
Mr = 766.59 | Z = 4 |
Orthorhombic, C2221 | Mo Kα radiation |
a = 7.0699 (1) Å | µ = 0.23 mm−1 |
b = 20.4852 (3) Å | T = 100 K |
c = 22.5416 (3) Å | 0.44 × 0.13 × 0.11 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 4758 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4407 reflections with I > 2σ(I) |
Tmin = 0.903, Tmax = 0.974 | Rint = 0.024 |
19037 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | H-atom parameters constrained |
wR(F2) = 0.078 | Δρmax = 0.29 e Å−3 |
S = 1.05 | Δρmin = −0.24 e Å−3 |
4758 reflections | Absolute structure: Flack (1983), 2086 Friedel pairs |
228 parameters | Absolute structure parameter: 0.02 (7) |
0 restraints |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
P1 | 0.12643 (8) | 0.0000 | 0.5000 | 0.01579 (10) | |
F1 | −0.03216 (16) | 0.05234 (5) | 0.48352 (4) | 0.0333 (2) | |
F2 | 0.28761 (15) | 0.05230 (5) | 0.48369 (4) | 0.0313 (2) | |
F3 | 0.12649 (14) | 0.02573 (5) | 0.56726 (4) | 0.02558 (19) | |
P2 | 0.0000 | 0.20928 (3) | 0.7500 | 0.01858 (11) | |
F4 | 0.03085 (15) | 0.26421 (5) | 0.79953 (4) | 0.0304 (2) | |
F5 | −0.03160 (16) | 0.15392 (5) | 0.70063 (4) | 0.0331 (2) | |
F6 | 0.22344 (14) | 0.20932 (5) | 0.73648 (4) | 0.0307 (2) | |
N1 | 0.01439 (18) | 0.21030 (6) | 0.37157 (5) | 0.0166 (2) | |
N2 | −0.04694 (17) | 0.31380 (6) | 0.38710 (5) | 0.0158 (2) | |
C1 | 0.0000 | 0.01437 (9) | 0.2500 | 0.0217 (4) | |
H1A | 0.0000 | −0.0320 | 0.2500 | 0.026* | |
C2 | 0.0497 (2) | 0.04841 (7) | 0.30090 (7) | 0.0187 (3) | |
H2A | 0.0830 | 0.0252 | 0.3359 | 0.022* | |
C3 | 0.0511 (2) | 0.11646 (6) | 0.30090 (6) | 0.0155 (3) | |
C4 | 0.0000 | 0.15040 (9) | 0.2500 | 0.0171 (4) | |
H4A | 0.0000 | 0.1968 | 0.2500 | 0.020* | |
C5 | 0.1218 (2) | 0.15116 (6) | 0.35629 (6) | 0.0184 (3) | |
H5A | 0.1158 | 0.1204 | 0.3901 | 0.022* | |
H5B | 0.2561 | 0.1632 | 0.3504 | 0.022* | |
C6 | −0.1642 (2) | 0.21287 (7) | 0.39812 (6) | 0.0159 (3) | |
C7 | −0.2882 (2) | 0.16395 (7) | 0.41598 (7) | 0.0203 (3) | |
H7A | −0.2614 | 0.1191 | 0.4095 | 0.024* | |
C8 | −0.4523 (2) | 0.18423 (7) | 0.44364 (7) | 0.0215 (3) | |
H8A | −0.5404 | 0.1524 | 0.4568 | 0.026* | |
C9 | −0.4927 (2) | 0.25100 (7) | 0.45287 (6) | 0.0194 (3) | |
H9A | −0.6077 | 0.2628 | 0.4718 | 0.023* | |
C10 | −0.3694 (2) | 0.29965 (7) | 0.43506 (6) | 0.0168 (3) | |
H10A | −0.3966 | 0.3446 | 0.4411 | 0.020* | |
C11 | −0.2030 (2) | 0.27901 (6) | 0.40778 (6) | 0.0157 (3) | |
C12 | 0.0780 (2) | 0.27128 (7) | 0.36572 (6) | 0.0173 (3) | |
H12A | 0.1962 | 0.2828 | 0.3486 | 0.021* | |
C13 | −0.0262 (2) | 0.38548 (6) | 0.38878 (7) | 0.0187 (3) | |
H13A | −0.1242 | 0.4034 | 0.4163 | 0.022* | |
C14 | −0.0516 (3) | 0.41777 (8) | 0.32852 (8) | 0.0328 (4) | |
H14A | −0.1872 | 0.4213 | 0.3181 | 0.039* | |
H14B | 0.0147 | 0.3929 | 0.2971 | 0.039* | |
C15 | 0.0376 (3) | 0.48588 (8) | 0.33678 (10) | 0.0377 (5) | |
H15A | 0.1187 | 0.4970 | 0.3024 | 0.045* | |
H15B | −0.0620 | 0.5196 | 0.3407 | 0.045* | |
C16 | 0.1564 (2) | 0.48203 (7) | 0.39385 (8) | 0.0258 (3) | |
H16A | 0.2848 | 0.4998 | 0.3871 | 0.031* | |
H16B | 0.0956 | 0.5070 | 0.4262 | 0.031* | |
C17 | 0.1659 (2) | 0.40913 (7) | 0.40946 (7) | 0.0233 (3) | |
H17A | 0.2696 | 0.3870 | 0.3879 | 0.028* | |
H17B | 0.1828 | 0.4024 | 0.4526 | 0.028* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P1 | 0.0180 (2) | 0.0139 (2) | 0.0155 (2) | 0.000 | 0.000 | 0.00104 (18) |
F1 | 0.0360 (6) | 0.0354 (5) | 0.0287 (5) | 0.0206 (4) | −0.0024 (4) | −0.0028 (4) |
F2 | 0.0348 (6) | 0.0286 (5) | 0.0304 (5) | −0.0119 (4) | 0.0112 (4) | 0.0012 (4) |
F3 | 0.0298 (5) | 0.0311 (4) | 0.0158 (4) | −0.0089 (4) | 0.0008 (4) | −0.0032 (4) |
P2 | 0.0195 (3) | 0.0204 (2) | 0.0159 (2) | 0.000 | −0.0036 (2) | 0.000 |
F4 | 0.0330 (6) | 0.0316 (5) | 0.0266 (5) | 0.0000 (4) | −0.0041 (4) | −0.0115 (4) |
F5 | 0.0414 (6) | 0.0304 (5) | 0.0276 (5) | −0.0014 (5) | −0.0082 (5) | −0.0105 (4) |
F6 | 0.0202 (5) | 0.0419 (5) | 0.0300 (6) | 0.0038 (4) | −0.0009 (4) | −0.0035 (4) |
N1 | 0.0196 (6) | 0.0151 (5) | 0.0152 (5) | −0.0003 (5) | 0.0004 (5) | −0.0011 (4) |
N2 | 0.0162 (6) | 0.0144 (5) | 0.0168 (6) | −0.0026 (4) | 0.0024 (4) | −0.0011 (4) |
C1 | 0.0268 (11) | 0.0110 (8) | 0.0273 (11) | 0.000 | −0.0015 (9) | 0.000 |
C2 | 0.0206 (7) | 0.0158 (6) | 0.0197 (7) | 0.0016 (5) | 0.0000 (6) | 0.0027 (5) |
C3 | 0.0161 (6) | 0.0135 (6) | 0.0169 (6) | 0.0001 (5) | 0.0011 (5) | −0.0018 (5) |
C4 | 0.0208 (9) | 0.0116 (8) | 0.0188 (9) | 0.000 | 0.0011 (8) | 0.000 |
C5 | 0.0219 (7) | 0.0146 (6) | 0.0186 (7) | 0.0048 (6) | −0.0030 (6) | −0.0007 (5) |
C6 | 0.0186 (7) | 0.0180 (6) | 0.0111 (6) | −0.0010 (5) | −0.0022 (5) | 0.0007 (5) |
C7 | 0.0241 (8) | 0.0165 (6) | 0.0202 (7) | −0.0031 (5) | −0.0041 (6) | 0.0024 (5) |
C8 | 0.0221 (7) | 0.0226 (7) | 0.0199 (7) | −0.0079 (6) | −0.0005 (6) | 0.0058 (6) |
C9 | 0.0168 (7) | 0.0252 (7) | 0.0163 (6) | −0.0033 (6) | 0.0004 (6) | 0.0029 (5) |
C10 | 0.0183 (6) | 0.0175 (6) | 0.0145 (6) | −0.0002 (5) | 0.0002 (5) | 0.0004 (5) |
C11 | 0.0194 (7) | 0.0156 (6) | 0.0121 (6) | −0.0036 (5) | −0.0014 (5) | 0.0002 (5) |
C12 | 0.0190 (7) | 0.0182 (6) | 0.0149 (6) | −0.0012 (5) | 0.0012 (5) | −0.0004 (5) |
C13 | 0.0191 (7) | 0.0116 (5) | 0.0253 (7) | −0.0020 (5) | 0.0043 (6) | −0.0021 (5) |
C14 | 0.0383 (10) | 0.0226 (8) | 0.0376 (10) | −0.0044 (7) | −0.0151 (8) | 0.0105 (7) |
C15 | 0.0298 (9) | 0.0254 (8) | 0.0578 (13) | −0.0078 (7) | −0.0142 (9) | 0.0182 (8) |
C16 | 0.0223 (8) | 0.0176 (7) | 0.0376 (9) | −0.0050 (5) | 0.0037 (7) | −0.0022 (6) |
C17 | 0.0241 (8) | 0.0192 (7) | 0.0267 (8) | −0.0060 (6) | −0.0051 (6) | −0.0001 (6) |
P1—F1 | 1.5951 (10) | C5—H5A | 0.9900 |
P1—F1i | 1.5952 (10) | C5—H5B | 0.9900 |
P1—F3 | 1.6051 (9) | C6—C7 | 1.391 (2) |
P1—F3i | 1.6051 (9) | C6—C11 | 1.3993 (19) |
P1—F2 | 1.6067 (10) | C7—C8 | 1.381 (2) |
P1—F2i | 1.6067 (10) | C7—H7A | 0.9500 |
P2—F4ii | 1.6002 (10) | C8—C9 | 1.413 (2) |
P2—F4 | 1.6002 (10) | C8—H8A | 0.9500 |
P2—F5 | 1.6046 (10) | C9—C10 | 1.384 (2) |
P2—F5ii | 1.6046 (10) | C9—H9A | 0.9500 |
P2—F6 | 1.6088 (10) | C10—C11 | 1.393 (2) |
P2—F6ii | 1.6088 (10) | C10—H10A | 0.9500 |
N1—C12 | 1.3342 (18) | C12—H12A | 0.9500 |
N1—C6 | 1.3981 (19) | C13—C17 | 1.515 (2) |
N1—C5 | 1.4707 (17) | C13—C14 | 1.522 (2) |
N2—C12 | 1.3307 (18) | C13—H13A | 1.0000 |
N2—C11 | 1.3935 (18) | C14—C15 | 1.542 (2) |
N2—C13 | 1.4762 (17) | C14—H14A | 0.9900 |
C1—C2iii | 1.3879 (18) | C14—H14B | 0.9900 |
C1—C2 | 1.3879 (18) | C15—C16 | 1.538 (3) |
C1—H1A | 0.9500 | C15—H15A | 0.9900 |
C2—C3 | 1.3942 (19) | C15—H15B | 0.9900 |
C2—H2A | 0.9500 | C16—C17 | 1.536 (2) |
C3—C4 | 1.3894 (17) | C16—H16A | 0.9900 |
C3—C5 | 1.5210 (19) | C16—H16B | 0.9900 |
C4—C3iii | 1.3894 (17) | C17—H17A | 0.9900 |
C4—H4A | 0.9500 | C17—H17B | 0.9900 |
F1—P1—F1i | 90.68 (9) | H5A—C5—H5B | 107.6 |
F1—P1—F3 | 89.97 (5) | C7—C6—N1 | 131.74 (13) |
F1i—P1—F3 | 90.05 (5) | C7—C6—C11 | 121.94 (14) |
F1—P1—F3i | 90.05 (5) | N1—C6—C11 | 106.27 (12) |
F1i—P1—F3i | 89.97 (5) | C8—C7—C6 | 116.32 (13) |
F3—P1—F3i | 179.97 (8) | C8—C7—H7A | 121.8 |
F1—P1—F2 | 89.83 (6) | C6—C7—H7A | 121.8 |
F1i—P1—F2 | 179.47 (7) | C7—C8—C9 | 121.84 (14) |
F3—P1—F2 | 89.83 (5) | C7—C8—H8A | 119.1 |
F3i—P1—F2 | 90.15 (5) | C9—C8—H8A | 119.1 |
F1—P1—F2i | 179.47 (7) | C10—C9—C8 | 121.82 (14) |
F1i—P1—F2i | 89.83 (6) | C10—C9—H9A | 119.1 |
F3—P1—F2i | 90.15 (5) | C8—C9—H9A | 119.1 |
F3i—P1—F2i | 89.83 (5) | C9—C10—C11 | 116.20 (12) |
F2—P1—F2i | 89.66 (8) | C9—C10—H10A | 121.9 |
F4ii—P2—F4 | 90.62 (8) | C11—C10—H10A | 121.9 |
F4ii—P2—F5 | 89.66 (5) | C10—C11—N2 | 131.36 (12) |
F4—P2—F5 | 179.64 (6) | C10—C11—C6 | 121.87 (13) |
F4ii—P2—F5ii | 179.64 (6) | N2—C11—C6 | 106.74 (12) |
F4—P2—F5ii | 89.66 (5) | N2—C12—N1 | 110.70 (13) |
F5—P2—F5ii | 90.05 (8) | N2—C12—H12A | 124.6 |
F4ii—P2—F6 | 90.07 (6) | N1—C12—H12A | 124.6 |
F4—P2—F6 | 89.89 (6) | N2—C13—C17 | 114.52 (12) |
F5—P2—F6 | 90.33 (6) | N2—C13—C14 | 113.44 (12) |
F5ii—P2—F6 | 89.72 (6) | C17—C13—C14 | 103.97 (13) |
F4ii—P2—F6ii | 89.88 (6) | N2—C13—H13A | 108.2 |
F4—P2—F6ii | 90.07 (6) | C17—C13—H13A | 108.2 |
F5—P2—F6ii | 89.71 (6) | C14—C13—H13A | 108.2 |
F5ii—P2—F6ii | 90.33 (6) | C13—C14—C15 | 103.71 (14) |
F6—P2—F6ii | 179.94 (9) | C13—C14—H14A | 111.0 |
C12—N1—C6 | 108.13 (12) | C15—C14—H14A | 111.0 |
C12—N1—C5 | 125.04 (13) | C13—C14—H14B | 111.0 |
C6—N1—C5 | 126.70 (12) | C15—C14—H14B | 111.0 |
C12—N2—C11 | 108.16 (11) | H14A—C14—H14B | 109.0 |
C12—N2—C13 | 126.47 (12) | C16—C15—C14 | 106.14 (13) |
C11—N2—C13 | 125.37 (12) | C16—C15—H15A | 110.5 |
C2iii—C1—C2 | 119.68 (17) | C14—C15—H15A | 110.5 |
C2iii—C1—H1A | 120.2 | C16—C15—H15B | 110.5 |
C2—C1—H1A | 120.2 | C14—C15—H15B | 110.5 |
C1—C2—C3 | 120.28 (14) | H15A—C15—H15B | 108.7 |
C1—C2—H2A | 119.9 | C17—C16—C15 | 105.39 (13) |
C3—C2—H2A | 119.9 | C17—C16—H16A | 110.7 |
C4—C3—C2 | 119.91 (13) | C15—C16—H16A | 110.7 |
C4—C3—C5 | 121.97 (12) | C17—C16—H16B | 110.7 |
C2—C3—C5 | 118.01 (12) | C15—C16—H16B | 110.7 |
C3iii—C4—C3 | 119.95 (17) | H16A—C16—H16B | 108.8 |
C3iii—C4—H4A | 120.0 | C13—C17—C16 | 101.60 (12) |
C3—C4—H4A | 120.0 | C13—C17—H17A | 111.5 |
N1—C5—C3 | 114.05 (12) | C16—C17—H17A | 111.5 |
N1—C5—H5A | 108.7 | C13—C17—H17B | 111.5 |
C3—C5—H5A | 108.7 | C16—C17—H17B | 111.5 |
N1—C5—H5B | 108.7 | H17A—C17—H17B | 109.3 |
C3—C5—H5B | 108.7 | ||
C2iii—C1—C2—C3 | −0.43 (10) | C12—N2—C11—C6 | 0.54 (16) |
C1—C2—C3—C4 | 0.9 (2) | C13—N2—C11—C6 | −179.62 (13) |
C1—C2—C3—C5 | −175.19 (12) | C7—C6—C11—C10 | −1.0 (2) |
C2—C3—C4—C3iii | −0.43 (10) | N1—C6—C11—C10 | −178.56 (12) |
C5—C3—C4—C3iii | 175.47 (15) | C7—C6—C11—N2 | 177.31 (13) |
C12—N1—C5—C3 | −108.17 (16) | N1—C6—C11—N2 | −0.29 (15) |
C6—N1—C5—C3 | 76.47 (17) | C11—N2—C12—N1 | −0.60 (17) |
C4—C3—C5—N1 | 42.77 (18) | C13—N2—C12—N1 | 179.57 (13) |
C2—C3—C5—N1 | −141.25 (14) | C6—N1—C12—N2 | 0.41 (16) |
C12—N1—C6—C7 | −177.33 (15) | C5—N1—C12—N2 | −175.68 (13) |
C5—N1—C6—C7 | −1.3 (2) | C12—N2—C13—C17 | −44.6 (2) |
C12—N1—C6—C11 | −0.06 (15) | C11—N2—C13—C17 | 135.57 (14) |
C5—N1—C6—C11 | 175.94 (13) | C12—N2—C13—C14 | 74.5 (2) |
N1—C6—C7—C8 | 177.12 (14) | C11—N2—C13—C14 | −105.29 (17) |
C11—C6—C7—C8 | 0.2 (2) | N2—C13—C14—C15 | −162.32 (14) |
C6—C7—C8—C9 | 0.5 (2) | C17—C13—C14—C15 | −37.29 (18) |
C7—C8—C9—C10 | −0.5 (2) | C13—C14—C15—C16 | 15.5 (2) |
C8—C9—C10—C11 | −0.3 (2) | C14—C15—C16—C17 | 11.4 (2) |
C9—C10—C11—N2 | −176.85 (14) | N2—C13—C17—C16 | 168.57 (13) |
C9—C10—C11—C6 | 1.0 (2) | C14—C13—C17—C16 | 44.24 (15) |
C12—N2—C11—C10 | 178.59 (15) | C15—C16—C17—C13 | −33.95 (17) |
C13—N2—C11—C10 | −1.6 (2) |
Symmetry codes: (i) x, −y, −z+1; (ii) −x, y, −z+3/2; (iii) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2A···F3i | 0.95 | 2.44 | 3.3814 (18) | 171 |
C5—H5B···F4iv | 0.99 | 2.41 | 3.2670 (17) | 145 |
C8—H8A···F2v | 0.95 | 2.46 | 3.3912 (18) | 167 |
C12—H12A···F4iv | 0.95 | 2.42 | 3.2252 (17) | 142 |
C13—H13A···F2vi | 1.00 | 2.51 | 3.4090 (18) | 150 |
C13—H13A···F3vi | 1.00 | 2.31 | 3.2124 (17) | 149 |
C9—H9A···Cg1vi | 0.95 | 2.79 | 3.6416 (15) | 149 |
Symmetry codes: (i) x, −y, −z+1; (iv) −x+1/2, −y+1/2, z−1/2; (v) x−1, y, z; (vi) x−1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C32H36N42+·2PF6− |
Mr | 766.59 |
Crystal system, space group | Orthorhombic, C2221 |
Temperature (K) | 100 |
a, b, c (Å) | 7.0699 (1), 20.4852 (3), 22.5416 (3) |
V (Å3) | 3264.66 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.23 |
Crystal size (mm) | 0.44 × 0.13 × 0.11 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.903, 0.974 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19037, 4758, 4407 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.704 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.078, 1.05 |
No. of reflections | 4758 |
No. of parameters | 228 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.24 |
Absolute structure | Flack (1983), 2086 Friedel pairs |
Absolute structure parameter | 0.02 (7) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2A···F3i | 0.9500 | 2.4400 | 3.3814 (18) | 171.00 |
C5—H5B···F4ii | 0.9900 | 2.4100 | 3.2670 (17) | 145.00 |
C8—H8A···F2iii | 0.9500 | 2.4600 | 3.3912 (18) | 167.00 |
C12—H12A···F4ii | 0.9500 | 2.4200 | 3.2252 (17) | 142.00 |
C13—H13A···F2iv | 1.0000 | 2.5100 | 3.4090 (18) | 150.00 |
C13—H13A···F3iv | 1.0000 | 2.3100 | 3.2124 (17) | 149.00 |
C9—H9A···Cg1iv | 0.95 | 2.7900 | 3.6416 (15) | 149.00 |
Symmetry codes: (i) x, −y, −z+1; (ii) −x+1/2, −y+1/2, z−1/2; (iii) x−1, y, z; (iv) x−1/2, −y+1/2, −z+1. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
RAH and SFN thank Universiti Sains Malaysia (USM) for the short-term grant (304/PKIMIA/6311123) and RU grants (1001/PKIMIA/811157 and 1001/PKIMIA/813023). HKF thanks USM for the Research University Grant No. 1001/PFIZIK/811160.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazole, a heterocyclic aromatic organic compound, has a wide variety of biological activities (Shaharyar et al., 2012; Mohan et al., 2011). Previously, we have reported the crystal structures of benzimidazole with various substitutions (Haque et al., 2011, 2012). In this report, we describe the crystal structure of a meta-xylyl linked bis-benzimidazolium salt with cyclopentyl substitution.
All parameters in the title compound (Fig. 1) are within normal ranges. The complete molecule, as well as the anions, is generated by a crystallographic twofold axis. The benzimidazole (N1—N2/C6—C12) ring is planar with the r.m.s. 0.0161 (1) Å. It makes a dihedral angle of 5.77 (4)° with its symmetry-related component and of 80.96 (5)° with the central benzene ring (C1—C4/C2A—C3A). The cyclopentyl ring adopts a half chair conformation with puckering parameters Q = 0.4256 (18) Å and ϕ = 344.9 (3)° (Cremer & Pople, 1975).
In the crystal structure (Fig. 2), the molecules are linked into a three-dimensional network through intermolecular C—H···F hydrogen bonds and C—H···π interactions involving the centroid of the C6—C11 ring (Table 1).