organic compounds
10′-Chloro-3′,4′-dihydro-2′H-spiro[cyclopropane-1,7′(6′H)-pyrimido[2,1-a]isoquinolin]-6′-one
aLaboratory of Medicinal and Pharmaceutical Chemistry, Gifu Pharmaceutical University, Gifu 501-1196, Japan, bLaboratory of Pharmaceutical Chemistry, Faculty of Pharmaceutical Sciences, Okayama University, Okayama 700-8530, Japan, cResearch Core for Interdisciplinary Sciences, Okayama University, Okayama 700-8530, Japan, and dDepartment of Chemistry, Faculty of Science, Okayama University, Okayama 700-8530, Japan
*Correspondence e-mail: okuda@gifu-pu.ac.jp, ishidah@cc.okayama-u.ac.jp
In the title compound, C14H13ClN2O, the fused hydropyrimidine ring adopts an with one of the methylene C atoms at the flap. The three-membered ring is approximately perpendicular to the attached isoquinoline ring system, with a dihedral angle of 89.44 (11)°. In the crystal, molecules are linked by a weak C—H⋯π interaction, forming a helical chain along the c axis.
Related literature
For recent reports on the development of complex heterocyclic skeletons for potential pharmaceutics in one step using the Truce–Smiles rearrangement, see: Okuda et al. (2010, 2011). For the synthesis of the title compound, see: Okuda et al. (2012).
Experimental
Crystal data
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Data collection: PROCESS-AUTO (Rigaku/MSC, 2004); cell PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812044261/ff2085sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812044261/ff2085Isup2.hkl
The detailed experimental procedure for the synthesis of 10'-chloro-3',4'-dihydro-2'H-spiro[cyclopropane-1,7'(6'H)-pyrimido[2,1-a]isoquinolin]-6'-one (m.p. 424–425 K from n-hexane) from 5-amino-7-chloro-1,2-dihydrofuro[2,3-c]isoquinoline was described in our previous paper (Okuda et al., 2012). Single crystals suitable for X-ray diffraction were obtained from an acetonitrile/water solution. The title compound was dissolved in hot acetonitrile, then water was added dropwise until the solution became turbid. Slow evaporation at room temperature gave the colourless crystals
H atoms were located in a difference Fourier map and then were positioned geometrically (C—H = 0.95 or 0.99 Å) and refined as riding, with Uiso(H) = 1.2Ueq(C).
Data collection: PROCESS-AUTO (Rigaku/MSC, 2004); cell
PROCESS-AUTO (Rigaku/MSC, 2004); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C14H13ClN2O | F(000) = 544.00 |
Mr = 260.72 | Dx = 1.489 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71075 Å |
Hall symbol: P 2c -2ac | Cell parameters from 15021 reflections |
a = 8.8746 (5) Å | θ = 3.1–30.0° |
b = 13.3273 (7) Å | µ = 0.32 mm−1 |
c = 9.8331 (6) Å | T = 180 K |
V = 1163.01 (11) Å3 | Platelet, colourless |
Z = 4 | 0.25 × 0.21 × 0.03 mm |
Rigaku R-AXIS RAPIDII diffractometer | 3095 reflections with I > 2σ(I) |
Detector resolution: 10.00 pixels mm-1 | Rint = 0.027 |
ω scans | θmax = 30.0° |
Absorption correction: numerical (NUMABS; Higashi, 1999) | h = −12→12 |
Tmin = 0.931, Tmax = 0.991 | k = −18→18 |
17373 measured reflections | l = −13→13 |
3359 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.079 | w = 1/[σ2(Fo2) + (0.0483P)2 + 0.1225P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
3359 reflections | Δρmax = 0.32 e Å−3 |
163 parameters | Δρmin = −0.15 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1571 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.01 (5) |
C14H13ClN2O | V = 1163.01 (11) Å3 |
Mr = 260.72 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 8.8746 (5) Å | µ = 0.32 mm−1 |
b = 13.3273 (7) Å | T = 180 K |
c = 9.8331 (6) Å | 0.25 × 0.21 × 0.03 mm |
Rigaku R-AXIS RAPIDII diffractometer | 3359 independent reflections |
Absorption correction: numerical (NUMABS; Higashi, 1999) | 3095 reflections with I > 2σ(I) |
Tmin = 0.931, Tmax = 0.991 | Rint = 0.027 |
17373 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.079 | Δρmax = 0.32 e Å−3 |
S = 1.05 | Δρmin = −0.15 e Å−3 |
3359 reflections | Absolute structure: Flack (1983), 1571 Friedel pairs |
163 parameters | Absolute structure parameter: 0.01 (5) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.55266 (4) | 0.63700 (2) | 0.30542 (5) | 0.03531 (10) | |
O1 | 0.57503 (12) | 0.04186 (7) | 0.43848 (12) | 0.0307 (2) | |
N1 | 0.45976 (11) | 0.15982 (7) | 0.31067 (13) | 0.01989 (19) | |
N2 | 0.36794 (13) | 0.28236 (8) | 0.15502 (12) | 0.0249 (2) | |
C1 | 0.44659 (13) | 0.25802 (10) | 0.25827 (13) | 0.0189 (2) | |
C2 | 0.56200 (15) | 0.13087 (10) | 0.40789 (14) | 0.0211 (2) | |
C3 | 0.65462 (14) | 0.20982 (9) | 0.47518 (13) | 0.0205 (2) | |
C4 | 0.63116 (14) | 0.31618 (9) | 0.43507 (12) | 0.0191 (2) | |
C5 | 0.70816 (15) | 0.39510 (11) | 0.49866 (14) | 0.0259 (3) | |
H5 | 0.7774 | 0.3806 | 0.5697 | 0.031* | |
C6 | 0.68510 (16) | 0.49385 (10) | 0.45973 (15) | 0.0260 (3) | |
H6 | 0.7372 | 0.5470 | 0.5038 | 0.031* | |
C7 | 0.58418 (16) | 0.51363 (10) | 0.35496 (15) | 0.0242 (3) | |
C8 | 0.50749 (14) | 0.43794 (9) | 0.28990 (14) | 0.0226 (2) | |
H8 | 0.4391 | 0.4531 | 0.2185 | 0.027* | |
C9 | 0.53128 (13) | 0.33791 (9) | 0.33006 (13) | 0.0187 (2) | |
C10 | 0.81354 (17) | 0.17547 (12) | 0.51350 (16) | 0.0301 (3) | |
H10A | 0.8443 | 0.1069 | 0.4865 | 0.036* | |
H10B | 0.8952 | 0.2260 | 0.5108 | 0.036* | |
C11 | 0.69779 (19) | 0.18535 (11) | 0.62195 (15) | 0.0293 (3) | |
H11A | 0.7079 | 0.2420 | 0.6864 | 0.035* | |
H11B | 0.6570 | 0.1229 | 0.6621 | 0.035* | |
C12 | 0.27594 (16) | 0.20671 (11) | 0.08694 (15) | 0.0297 (3) | |
H12A | 0.3328 | 0.1794 | 0.0086 | 0.036* | |
H12B | 0.1836 | 0.2390 | 0.0513 | 0.036* | |
C13 | 0.23159 (15) | 0.12115 (11) | 0.17992 (16) | 0.0289 (3) | |
H13A | 0.1610 | 0.1456 | 0.2505 | 0.035* | |
H13B | 0.1802 | 0.0681 | 0.1268 | 0.035* | |
C14 | 0.37139 (16) | 0.07873 (10) | 0.24647 (16) | 0.0267 (3) | |
H14A | 0.3421 | 0.0288 | 0.3162 | 0.032* | |
H14B | 0.4338 | 0.0443 | 0.1773 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.04450 (18) | 0.01793 (13) | 0.0435 (2) | −0.00198 (13) | 0.00151 (18) | 0.00384 (15) |
O1 | 0.0391 (5) | 0.0195 (5) | 0.0334 (6) | −0.0010 (4) | −0.0080 (5) | 0.0010 (4) |
N1 | 0.0222 (4) | 0.0189 (4) | 0.0186 (5) | −0.0024 (3) | −0.0003 (4) | −0.0022 (5) |
N2 | 0.0257 (5) | 0.0269 (5) | 0.0221 (5) | −0.0025 (4) | −0.0051 (4) | 0.0002 (4) |
C1 | 0.0193 (5) | 0.0197 (5) | 0.0177 (5) | 0.0001 (4) | 0.0020 (4) | −0.0015 (4) |
C2 | 0.0244 (5) | 0.0197 (6) | 0.0190 (6) | −0.0007 (4) | 0.0012 (4) | 0.0000 (4) |
C3 | 0.0227 (5) | 0.0201 (5) | 0.0187 (5) | −0.0006 (4) | −0.0026 (4) | −0.0005 (4) |
C4 | 0.0205 (5) | 0.0185 (5) | 0.0184 (5) | −0.0011 (4) | 0.0005 (4) | −0.0012 (4) |
C5 | 0.0280 (6) | 0.0252 (6) | 0.0245 (6) | −0.0031 (5) | −0.0051 (5) | −0.0013 (5) |
C6 | 0.0295 (6) | 0.0215 (6) | 0.0270 (7) | −0.0065 (5) | 0.0022 (5) | −0.0046 (5) |
C7 | 0.0279 (6) | 0.0176 (5) | 0.0272 (6) | −0.0009 (5) | 0.0069 (5) | 0.0009 (5) |
C8 | 0.0239 (5) | 0.0209 (5) | 0.0231 (6) | 0.0005 (4) | 0.0005 (5) | 0.0008 (5) |
C9 | 0.0193 (5) | 0.0194 (5) | 0.0174 (6) | −0.0005 (4) | 0.0020 (4) | −0.0013 (4) |
C10 | 0.0273 (7) | 0.0278 (7) | 0.0351 (8) | 0.0024 (6) | −0.0106 (6) | −0.0001 (6) |
C11 | 0.0407 (8) | 0.0257 (6) | 0.0214 (6) | −0.0004 (6) | −0.0089 (6) | 0.0032 (5) |
C12 | 0.0302 (7) | 0.0331 (7) | 0.0259 (7) | −0.0057 (6) | −0.0092 (6) | −0.0028 (5) |
C13 | 0.0256 (6) | 0.0330 (7) | 0.0281 (7) | −0.0072 (5) | −0.0040 (5) | −0.0051 (6) |
C14 | 0.0321 (6) | 0.0200 (6) | 0.0282 (6) | −0.0051 (5) | −0.0052 (5) | −0.0039 (5) |
Cl1—C7 | 1.7376 (14) | C6—H6 | 0.9500 |
O1—C2 | 1.2292 (16) | C7—C8 | 1.3748 (19) |
N1—C2 | 1.3733 (17) | C8—C9 | 1.4063 (17) |
N1—C1 | 1.4113 (16) | C8—H8 | 0.9500 |
N1—C14 | 1.4769 (16) | C10—C11 | 1.486 (2) |
N2—C1 | 1.2740 (17) | C10—H10A | 0.9900 |
N2—C12 | 1.4599 (17) | C10—H10B | 0.9900 |
C1—C9 | 1.4822 (17) | C11—H11A | 0.9900 |
C2—C3 | 1.4902 (18) | C11—H11B | 0.9900 |
C3—C4 | 1.4859 (17) | C12—C13 | 1.514 (2) |
C3—C11 | 1.5284 (19) | C12—H12A | 0.9900 |
C3—C10 | 1.5299 (19) | C12—H12B | 0.9900 |
C4—C9 | 1.3913 (17) | C13—C14 | 1.512 (2) |
C4—C5 | 1.4015 (18) | C13—H13A | 0.9900 |
C5—C6 | 1.3859 (19) | C13—H13B | 0.9900 |
C5—H5 | 0.9500 | C14—H14A | 0.9900 |
C6—C7 | 1.390 (2) | C14—H14B | 0.9900 |
C2—N1—C1 | 124.71 (10) | C4—C9—C1 | 121.81 (11) |
C2—N1—C14 | 116.28 (10) | C8—C9—C1 | 118.10 (11) |
C1—N1—C14 | 118.59 (11) | C11—C10—C3 | 60.87 (9) |
C1—N2—C12 | 119.73 (12) | C11—C10—H10A | 117.7 |
N2—C1—N1 | 124.92 (12) | C3—C10—H10A | 117.7 |
N2—C1—C9 | 118.32 (12) | C11—C10—H10B | 117.7 |
N1—C1—C9 | 116.76 (11) | C3—C10—H10B | 117.7 |
O1—C2—N1 | 120.24 (12) | H10A—C10—H10B | 114.8 |
O1—C2—C3 | 121.39 (12) | C10—C11—C3 | 60.97 (9) |
N1—C2—C3 | 118.37 (11) | C10—C11—H11A | 117.7 |
C4—C3—C2 | 118.58 (11) | C3—C11—H11A | 117.7 |
C4—C3—C11 | 119.30 (11) | C10—C11—H11B | 117.7 |
C2—C3—C11 | 114.01 (11) | C3—C11—H11B | 117.7 |
C4—C3—C10 | 118.68 (11) | H11A—C11—H11B | 114.8 |
C2—C3—C10 | 113.99 (11) | N2—C12—C13 | 112.88 (12) |
C11—C3—C10 | 58.16 (9) | N2—C12—H12A | 109.0 |
C9—C4—C5 | 119.05 (11) | C13—C12—H12A | 109.0 |
C9—C4—C3 | 119.00 (11) | N2—C12—H12B | 109.0 |
C5—C4—C3 | 121.94 (11) | C13—C12—H12B | 109.0 |
C6—C5—C4 | 121.16 (12) | H12A—C12—H12B | 107.8 |
C6—C5—H5 | 119.4 | C14—C13—C12 | 109.24 (11) |
C4—C5—H5 | 119.4 | C14—C13—H13A | 109.8 |
C5—C6—C7 | 118.68 (12) | C12—C13—H13A | 109.8 |
C5—C6—H6 | 120.7 | C14—C13—H13B | 109.8 |
C7—C6—H6 | 120.7 | C12—C13—H13B | 109.8 |
C8—C7—C6 | 121.64 (12) | H13A—C13—H13B | 108.3 |
C8—C7—Cl1 | 118.96 (11) | N1—C14—C13 | 110.31 (11) |
C6—C7—Cl1 | 119.40 (10) | N1—C14—H14A | 109.6 |
C7—C8—C9 | 119.38 (12) | C13—C14—H14A | 109.6 |
C7—C8—H8 | 120.3 | N1—C14—H14B | 109.6 |
C9—C8—H8 | 120.3 | C13—C14—H14B | 109.6 |
C4—C9—C8 | 120.09 (11) | H14A—C14—H14B | 108.1 |
C12—N2—C1—N1 | 3.66 (19) | C4—C5—C6—C7 | −0.4 (2) |
C12—N2—C1—C9 | −176.29 (11) | C5—C6—C7—C8 | 0.0 (2) |
C2—N1—C1—N2 | 169.27 (13) | C5—C6—C7—Cl1 | 179.55 (11) |
C14—N1—C1—N2 | −2.93 (19) | C6—C7—C8—C9 | 0.1 (2) |
C2—N1—C1—C9 | −10.78 (18) | Cl1—C7—C8—C9 | −179.46 (10) |
C14—N1—C1—C9 | 177.02 (11) | C5—C4—C9—C8 | −0.63 (18) |
C1—N1—C2—O1 | −173.21 (13) | C3—C4—C9—C8 | −179.79 (11) |
C14—N1—C2—O1 | −0.84 (19) | C5—C4—C9—C1 | 179.82 (11) |
C1—N1—C2—C3 | 7.29 (19) | C3—C4—C9—C1 | 0.66 (17) |
C14—N1—C2—C3 | 179.66 (12) | C7—C8—C9—C4 | 0.24 (18) |
O1—C2—C3—C4 | −178.91 (12) | C7—C8—C9—C1 | 179.81 (11) |
N1—C2—C3—C4 | 0.58 (18) | N2—C1—C9—C4 | −173.56 (12) |
O1—C2—C3—C11 | −30.41 (18) | N1—C1—C9—C4 | 6.49 (17) |
N1—C2—C3—C11 | 149.08 (13) | N2—C1—C9—C8 | 6.88 (17) |
O1—C2—C3—C10 | 33.87 (19) | N1—C1—C9—C8 | −173.07 (11) |
N1—C2—C3—C10 | −146.63 (13) | C4—C3—C10—C11 | 108.47 (14) |
C2—C3—C4—C9 | −4.26 (17) | C2—C3—C10—C11 | −104.35 (13) |
C11—C3—C4—C9 | −151.08 (12) | C4—C3—C11—C10 | −107.42 (14) |
C10—C3—C4—C9 | 141.41 (12) | C2—C3—C11—C10 | 104.32 (13) |
C2—C3—C4—C5 | 176.60 (12) | C1—N2—C12—C13 | 25.27 (18) |
C11—C3—C4—C5 | 29.78 (18) | N2—C12—C13—C14 | −52.69 (16) |
C10—C3—C4—C5 | −37.73 (18) | C2—N1—C14—C13 | 160.89 (12) |
C9—C4—C5—C6 | 0.73 (19) | C1—N1—C14—C13 | −26.25 (17) |
C3—C4—C5—C6 | 179.87 (13) | C12—C13—C14—N1 | 51.96 (16) |
Cg1 is the centroid of the C1/N1/C2–C4/C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12B···Cg1i | 0.99 | 2.72 | 3.6000 (15) | 148 |
Symmetry code: (i) −x+1/2, y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C14H13ClN2O |
Mr | 260.72 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 180 |
a, b, c (Å) | 8.8746 (5), 13.3273 (7), 9.8331 (6) |
V (Å3) | 1163.01 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.32 |
Crystal size (mm) | 0.25 × 0.21 × 0.03 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPIDII diffractometer |
Absorption correction | Numerical (NUMABS; Higashi, 1999) |
Tmin, Tmax | 0.931, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17373, 3359, 3095 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.079, 1.05 |
No. of reflections | 3359 |
No. of parameters | 163 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.15 |
Absolute structure | Flack (1983), 1571 Friedel pairs |
Absolute structure parameter | 0.01 (5) |
Computer programs: PROCESS-AUTO (Rigaku/MSC, 2004), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the C1/N1/C2–C4/C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12B···Cg1i | 0.99 | 2.72 | 3.6000 (15) | 148 |
Symmetry code: (i) −x+1/2, y, z−1/2. |
References
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As an extension of our work to develop complex heterocyclic skeletons as leads for potential pharmaceutical agents (Okuda et al., 2011), we found that tricyclic 5-amino-1,2-dihydrofuro[2,3-c]isoquinolines (Okuda et al., 2010), easily accessible by a one step base-induced Truce-Smiles rearrangement of 2-(3-cyanopropoxy)benzonitriles, showed bronchodilator activity (unpublished results). In the pursuit of more potent analogs, we have explored preparation of additional new ring-fused tetracyclic heterocycles. Herein we report that reaction of 5-amino-7-chloro-1,2-dihydrofuro[2,3-c]isoquinoline with 1,3-dibromopropane in the presence of calcium oxide afforded the title compound (Okuda et al., 2012) via rearrangement instead of the anticipated 10-chloro-2,3,6,7-tetrahydrofuro[2,3-c]imidazo[2,1-a]isoquinoline.
In the title compound, the fused hydropyrimidine N1/C1/N2/C12–C14 ring adopts an envelope conformation with atom C13 at the flap. The isoquinoline C1/N1/C2–C9 ring system is planar with an r.m.s. deviation of 0.044 (1) Å. The three-membered C3/C10/C11 ring is approximately perpendicular to the attached isoquinoline ring system with a dihedral angle of 89.44 (11)°. In the crystal, molecules are linked by a weak C—H···π interaction (Table 1), forming a helical chain along the c axis.