organic compounds
N-[2-(5-Bromo-2-morpholin-4-ylpyrimidin-4-ylsulfanyl)-4-methoxyphenyl]-2,4,6-trimethylbenzenesulfonamide
aDepartment of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570 006, India, bPG Department of Studies in Chemistry, JSS College of Arts, Commerce and Science, Ooty Road, Mysore 570 025, India, and cX-ray Crystallography Laboratory, Post-Graduate Department of Physics & Electronics, University of Jammu, Jammu Tawi 180 006, India
*Correspondence e-mail: mas@physics.uni-mysore.ac.in
In the title compound, C24H27BrN4O4S2, the molecule is twisted at the sulfonyl S atom with a C—S(O2)—N(H)—C torsion angle of 62.6 (3)°. The benzene rings bridged by the sulfonamide group are tilted to each other by a dihedral angle of 60.6 (1)°. The dihedral angle between the sulfur-bridged pyrimidine and benzene rings is 62.7 (1)°. The morpholine ring adopts a chair conformation. The molecular conformation is stabilized by a weak intramolecular π–π stacking interaction between the pyrimidine and the 2,4,6-trimethylbenzene rings [centroid–centroid distance = 3.793 (2) Å]. In the crystal, molecules are linked by N—H⋯O hydrogen bonds into a chain along the b axis.
Related literature
For related structures of et al. (2011); Akkurt et al. (2011); Kant et al. (2012). For bond-length data, see: Allen et al. (1987). For ring conformations, see: Duax & Norton (1975).
see: RodriguesExperimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812040792/is5200sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812040792/is5200Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812040792/is5200Isup3.cml
The reaction of N-[2-(5-bromo-2-morpholin-4-yl-pyrimidin-4-ylsulfanyl)-4-methoxy-phenyl]-2,4,6-trimethyl-benzenesulfonamide (5.29 g, 0.01 mol) with morpholine (0.88 g, 0.01 mol) were carried out in the presence of triethylamine and the reaction mixture was allowed to stir at room temperature for 6–7 h in dry dichloromethane. The progress of the reaction was monitored by TLC. Upon completion, the solvent was removed under reduced pressure and residue was extracted with ethyl acetate. The compound was purified by successive recrystallization from methanol (yield 83%, m.p. 454–456 K).
All H atoms were positioned geometrically and were treated as riding on their parent C/N atoms, with C—H = 0.93–0.97 Å and N—H = 0.86 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).C24H27BrN4O4S2 | F(000) = 1192 |
Mr = 579.53 | Dx = 1.499 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6670 reflections |
a = 10.2583 (4) Å | θ = 3.7–29.0° |
b = 17.4727 (6) Å | µ = 1.80 mm−1 |
c = 14.4375 (7) Å | T = 293 K |
β = 97.199 (4)° | Block, brown |
V = 2567.38 (18) Å3 | 0.3 × 0.2 × 0.2 mm |
Z = 4 |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 5023 independent reflections |
Radiation source: fine-focus sealed tube | 3359 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
Detector resolution: 16.1049 pixels mm-1 | θmax = 26.0°, θmin = 3.7° |
ω scan | h = −12→12 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −21→21 |
Tmin = 0.526, Tmax = 0.697 | l = −17→17 |
19056 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H-atom parameters constrained |
wR(F2) = 0.105 | w = 1/[σ2(Fo2) + (0.0338P)2 + 1.6315P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.001 |
5023 reflections | Δρmax = 0.31 e Å−3 |
321 parameters | Δρmin = −0.39 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0057 (4) |
C24H27BrN4O4S2 | V = 2567.38 (18) Å3 |
Mr = 579.53 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.2583 (4) Å | µ = 1.80 mm−1 |
b = 17.4727 (6) Å | T = 293 K |
c = 14.4375 (7) Å | 0.3 × 0.2 × 0.2 mm |
β = 97.199 (4)° |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 5023 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 3359 reflections with I > 2σ(I) |
Tmin = 0.526, Tmax = 0.697 | Rint = 0.045 |
19056 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.105 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.31 e Å−3 |
5023 reflections | Δρmin = −0.39 e Å−3 |
321 parameters |
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 1.02664 (4) | 0.10295 (2) | 0.23807 (3) | 0.07706 (19) | |
S1 | 0.50455 (9) | 0.24940 (6) | 0.00299 (6) | 0.0566 (3) | |
S2 | 0.74901 (8) | 0.19238 (5) | 0.24649 (6) | 0.0472 (2) | |
N1 | 0.5008 (2) | 0.22120 (16) | 0.11087 (18) | 0.0487 (7) | |
H1 | 0.4848 | 0.1739 | 0.1215 | 0.058* | |
O1 | 0.4808 (3) | 0.18139 (17) | −0.05220 (17) | 0.0788 (8) | |
O2 | 0.4152 (2) | 0.31164 (17) | −0.01409 (18) | 0.0774 (8) | |
O3 | 0.5639 (3) | 0.42389 (15) | 0.41145 (19) | 0.0704 (7) | |
C1 | 0.6672 (3) | 0.28269 (18) | −0.0041 (2) | 0.0430 (8) | |
C2 | 0.6972 (4) | 0.36148 (19) | −0.0014 (2) | 0.0508 (9) | |
C3 | 0.8256 (4) | 0.3831 (2) | −0.0079 (2) | 0.0562 (9) | |
H3 | 0.8455 | 0.4350 | −0.0071 | 0.067* | |
C4 | 0.9252 (3) | 0.3316 (2) | −0.0154 (2) | 0.0535 (9) | |
C5 | 0.8941 (3) | 0.2553 (2) | −0.0154 (2) | 0.0527 (9) | |
H5 | 0.9608 | 0.2197 | −0.0187 | 0.063* | |
C6 | 0.7666 (3) | 0.22861 (18) | −0.0106 (2) | 0.0460 (8) | |
C7 | 0.7498 (4) | 0.14289 (19) | −0.0125 (3) | 0.0681 (11) | |
H7A | 0.7078 | 0.1274 | −0.0727 | 0.102* | |
H7B | 0.6966 | 0.1278 | 0.0346 | 0.102* | |
H7C | 0.8344 | 0.1188 | −0.0005 | 0.102* | |
C8 | 1.0642 (4) | 0.3581 (3) | −0.0207 (3) | 0.0791 (12) | |
H8A | 1.0826 | 0.3555 | −0.0842 | 0.119* | |
H8B | 1.1244 | 0.3257 | 0.0176 | 0.119* | |
H8C | 1.0740 | 0.4100 | 0.0011 | 0.119* | |
C9 | 0.6004 (4) | 0.4257 (2) | 0.0093 (3) | 0.0787 (13) | |
H9A | 0.5321 | 0.4249 | −0.0427 | 0.118* | |
H9B | 0.6453 | 0.4739 | 0.0110 | 0.118* | |
H9C | 0.5625 | 0.4187 | 0.0662 | 0.118* | |
C10 | 0.5231 (3) | 0.27276 (18) | 0.1873 (2) | 0.0412 (7) | |
C11 | 0.4332 (3) | 0.3308 (2) | 0.1984 (2) | 0.0532 (9) | |
H11 | 0.3594 | 0.3360 | 0.1544 | 0.064* | |
C12 | 0.4508 (3) | 0.3801 (2) | 0.2724 (3) | 0.0553 (9) | |
H12 | 0.3902 | 0.4191 | 0.2774 | 0.066* | |
C13 | 0.5583 (3) | 0.3723 (2) | 0.3399 (2) | 0.0503 (8) | |
C14 | 0.6476 (3) | 0.31466 (18) | 0.3324 (2) | 0.0446 (8) | |
H14 | 0.7183 | 0.3082 | 0.3787 | 0.054* | |
C15 | 0.6321 (3) | 0.26588 (18) | 0.2552 (2) | 0.0409 (7) | |
C16 | 0.8899 (3) | 0.24701 (19) | 0.2337 (2) | 0.0404 (7) | |
N17 | 0.8793 (2) | 0.32166 (15) | 0.22635 (17) | 0.0414 (6) | |
C18 | 0.9896 (3) | 0.3618 (2) | 0.2209 (2) | 0.0490 (8) | |
N19 | 1.1113 (3) | 0.33241 (18) | 0.2232 (2) | 0.0611 (8) | |
C20 | 1.1185 (3) | 0.2570 (2) | 0.2294 (3) | 0.0614 (10) | |
H20 | 1.2006 | 0.2341 | 0.2313 | 0.074* | |
C21 | 1.0110 (3) | 0.2104 (2) | 0.2331 (2) | 0.0504 (8) | |
N22 | 0.9747 (3) | 0.43869 (16) | 0.2097 (2) | 0.0575 (8) | |
C23 | 0.8513 (3) | 0.4755 (2) | 0.2241 (3) | 0.0623 (10) | |
H23A | 0.7806 | 0.4382 | 0.2173 | 0.075* | |
H23B | 0.8303 | 0.5154 | 0.1780 | 0.075* | |
C24 | 0.8650 (4) | 0.5089 (2) | 0.3196 (3) | 0.0726 (12) | |
H24A | 0.7834 | 0.5335 | 0.3300 | 0.087* | |
H24B | 0.8829 | 0.4685 | 0.3655 | 0.087* | |
O25 | 0.9689 (3) | 0.56335 (15) | 0.3307 (2) | 0.0848 (9) | |
C25 | 0.6630 (4) | 0.4143 (2) | 0.4887 (3) | 0.0773 (12) | |
H25A | 0.6544 | 0.3647 | 0.5158 | 0.116* | |
H25B | 0.6535 | 0.4531 | 0.5345 | 0.116* | |
H25C | 0.7479 | 0.4187 | 0.4679 | 0.116* | |
C26 | 1.0905 (4) | 0.5289 (2) | 0.3180 (3) | 0.0808 (14) | |
H26A | 1.1128 | 0.4909 | 0.3663 | 0.097* | |
H26B | 1.1589 | 0.5676 | 0.3241 | 0.097* | |
C27 | 1.0850 (3) | 0.4917 (2) | 0.2245 (3) | 0.0679 (11) | |
H27A | 1.0756 | 0.5306 | 0.1761 | 0.082* | |
H27B | 1.1663 | 0.4643 | 0.2204 | 0.082* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0695 (3) | 0.0623 (3) | 0.1013 (4) | 0.0199 (2) | 0.0181 (2) | 0.0000 (2) |
S1 | 0.0426 (5) | 0.0840 (7) | 0.0398 (5) | −0.0032 (5) | −0.0080 (4) | −0.0043 (5) |
S2 | 0.0379 (4) | 0.0491 (5) | 0.0532 (5) | −0.0001 (4) | 0.0004 (4) | −0.0006 (4) |
N1 | 0.0435 (16) | 0.0588 (17) | 0.0423 (16) | −0.0127 (14) | −0.0004 (12) | −0.0017 (14) |
O1 | 0.0723 (18) | 0.108 (2) | 0.0522 (16) | −0.0252 (16) | −0.0088 (13) | −0.0267 (16) |
O2 | 0.0485 (15) | 0.118 (2) | 0.0611 (17) | 0.0205 (15) | −0.0109 (12) | 0.0180 (16) |
O3 | 0.0646 (17) | 0.0829 (18) | 0.0653 (18) | 0.0025 (14) | 0.0142 (14) | −0.0251 (15) |
C1 | 0.0422 (18) | 0.056 (2) | 0.0294 (16) | 0.0062 (16) | 0.0000 (14) | −0.0014 (15) |
C2 | 0.062 (2) | 0.048 (2) | 0.043 (2) | 0.0115 (17) | 0.0059 (17) | 0.0018 (16) |
C3 | 0.072 (3) | 0.046 (2) | 0.053 (2) | −0.0036 (19) | 0.0172 (19) | 0.0023 (17) |
C4 | 0.056 (2) | 0.062 (2) | 0.045 (2) | −0.0007 (19) | 0.0162 (16) | 0.0007 (18) |
C5 | 0.053 (2) | 0.054 (2) | 0.052 (2) | 0.0127 (17) | 0.0136 (17) | −0.0006 (17) |
C6 | 0.057 (2) | 0.0443 (18) | 0.0370 (18) | 0.0048 (16) | 0.0079 (15) | −0.0056 (15) |
C7 | 0.080 (3) | 0.050 (2) | 0.078 (3) | 0.002 (2) | 0.024 (2) | −0.011 (2) |
C8 | 0.068 (3) | 0.090 (3) | 0.083 (3) | −0.013 (2) | 0.024 (2) | −0.002 (2) |
C9 | 0.079 (3) | 0.061 (2) | 0.097 (3) | 0.027 (2) | 0.014 (2) | 0.000 (2) |
C10 | 0.0296 (16) | 0.0559 (19) | 0.0381 (17) | −0.0055 (15) | 0.0044 (13) | 0.0027 (16) |
C11 | 0.0321 (18) | 0.072 (2) | 0.054 (2) | 0.0021 (17) | 0.0027 (15) | 0.006 (2) |
C12 | 0.040 (2) | 0.067 (2) | 0.061 (2) | 0.0101 (17) | 0.0152 (17) | −0.003 (2) |
C13 | 0.043 (2) | 0.061 (2) | 0.049 (2) | −0.0048 (17) | 0.0149 (16) | −0.0064 (18) |
C14 | 0.0362 (17) | 0.062 (2) | 0.0356 (18) | −0.0064 (16) | 0.0027 (14) | 0.0004 (16) |
C15 | 0.0289 (16) | 0.0535 (19) | 0.0403 (18) | −0.0021 (14) | 0.0043 (13) | 0.0047 (15) |
C16 | 0.0340 (17) | 0.056 (2) | 0.0294 (16) | 0.0019 (15) | −0.0008 (12) | −0.0041 (15) |
N17 | 0.0294 (14) | 0.0520 (17) | 0.0424 (15) | 0.0012 (12) | 0.0025 (11) | −0.0056 (13) |
C18 | 0.0378 (19) | 0.058 (2) | 0.050 (2) | 0.0022 (17) | 0.0043 (15) | −0.0052 (17) |
N19 | 0.0327 (16) | 0.068 (2) | 0.084 (2) | 0.0034 (15) | 0.0117 (15) | −0.0023 (18) |
C20 | 0.0334 (19) | 0.074 (3) | 0.079 (3) | 0.0102 (19) | 0.0130 (18) | −0.001 (2) |
C21 | 0.0423 (19) | 0.058 (2) | 0.051 (2) | 0.0100 (17) | 0.0057 (15) | −0.0047 (17) |
N22 | 0.0324 (15) | 0.0558 (18) | 0.085 (2) | −0.0048 (14) | 0.0119 (14) | −0.0099 (16) |
C23 | 0.041 (2) | 0.049 (2) | 0.096 (3) | 0.0003 (17) | 0.007 (2) | 0.002 (2) |
C24 | 0.078 (3) | 0.054 (2) | 0.092 (3) | 0.013 (2) | 0.033 (2) | 0.010 (2) |
O25 | 0.081 (2) | 0.0571 (17) | 0.113 (3) | 0.0073 (16) | −0.0002 (18) | −0.0187 (16) |
C25 | 0.079 (3) | 0.100 (3) | 0.055 (2) | −0.021 (2) | 0.014 (2) | −0.026 (2) |
C26 | 0.065 (3) | 0.057 (2) | 0.112 (4) | −0.005 (2) | −0.022 (3) | 0.001 (3) |
C27 | 0.040 (2) | 0.061 (2) | 0.104 (3) | −0.0081 (18) | 0.014 (2) | 0.008 (2) |
Br1—C21 | 1.885 (3) | C11—C12 | 1.368 (5) |
S1—O2 | 1.424 (3) | C11—H11 | 0.9300 |
S1—O1 | 1.434 (3) | C12—C13 | 1.384 (5) |
S1—N1 | 1.639 (3) | C12—H12 | 0.9300 |
S1—C1 | 1.782 (3) | C13—C14 | 1.376 (4) |
S2—C16 | 1.761 (3) | C14—C15 | 1.396 (4) |
S2—C15 | 1.772 (3) | C14—H14 | 0.9300 |
N1—C10 | 1.421 (4) | C16—N17 | 1.312 (4) |
N1—H1 | 0.8600 | C16—C21 | 1.399 (4) |
O3—C13 | 1.367 (4) | N17—C18 | 1.342 (4) |
O3—C25 | 1.421 (5) | C18—N19 | 1.347 (4) |
C1—C6 | 1.402 (4) | C18—N22 | 1.359 (4) |
C1—C2 | 1.410 (4) | N19—C20 | 1.322 (4) |
C2—C3 | 1.385 (5) | C20—C21 | 1.377 (5) |
C2—C9 | 1.519 (5) | C20—H20 | 0.9300 |
C3—C4 | 1.375 (5) | N22—C27 | 1.457 (4) |
C3—H3 | 0.9300 | N22—C23 | 1.458 (4) |
C4—C5 | 1.371 (5) | C23—C24 | 1.487 (5) |
C4—C8 | 1.511 (5) | C23—H23A | 0.9700 |
C5—C6 | 1.398 (5) | C23—H23B | 0.9700 |
C5—H5 | 0.9300 | C24—O25 | 1.423 (5) |
C6—C7 | 1.508 (4) | C24—H24A | 0.9700 |
C7—H7A | 0.9600 | C24—H24B | 0.9700 |
C7—H7B | 0.9600 | O25—C26 | 1.417 (5) |
C7—H7C | 0.9600 | C25—H25A | 0.9600 |
C8—H8A | 0.9600 | C25—H25B | 0.9600 |
C8—H8B | 0.9600 | C25—H25C | 0.9600 |
C8—H8C | 0.9600 | C26—C27 | 1.493 (6) |
C9—H9A | 0.9600 | C26—H26A | 0.9700 |
C9—H9B | 0.9600 | C26—H26B | 0.9700 |
C9—H9C | 0.9600 | C27—H27A | 0.9700 |
C10—C11 | 1.393 (4) | C27—H27B | 0.9700 |
C10—C15 | 1.396 (4) | ||
O2—S1—O1 | 118.40 (17) | O3—C13—C12 | 115.0 (3) |
O2—S1—N1 | 107.62 (16) | C14—C13—C12 | 119.8 (3) |
O1—S1—N1 | 104.85 (16) | C13—C14—C15 | 120.0 (3) |
O2—S1—C1 | 109.14 (16) | C13—C14—H14 | 120.0 |
O1—S1—C1 | 109.49 (16) | C15—C14—H14 | 120.0 |
N1—S1—C1 | 106.67 (13) | C14—C15—C10 | 120.6 (3) |
C16—S2—C15 | 100.73 (15) | C14—C15—S2 | 119.2 (2) |
C10—N1—S1 | 121.8 (2) | C10—C15—S2 | 120.1 (2) |
C10—N1—H1 | 119.1 | N17—C16—C21 | 121.2 (3) |
S1—N1—H1 | 119.1 | N17—C16—S2 | 119.1 (2) |
C13—O3—C25 | 118.3 (3) | C21—C16—S2 | 119.6 (3) |
C6—C1—C2 | 120.1 (3) | C16—N17—C18 | 117.6 (3) |
C6—C1—S1 | 118.6 (2) | N17—C18—N19 | 125.8 (3) |
C2—C1—S1 | 121.3 (2) | N17—C18—N22 | 116.2 (3) |
C3—C2—C1 | 118.0 (3) | N19—C18—N22 | 118.1 (3) |
C3—C2—C9 | 116.5 (3) | C20—N19—C18 | 115.2 (3) |
C1—C2—C9 | 125.5 (3) | N19—C20—C21 | 123.6 (3) |
C4—C3—C2 | 123.3 (3) | N19—C20—H20 | 118.2 |
C4—C3—H3 | 118.3 | C21—C20—H20 | 118.2 |
C2—C3—H3 | 118.3 | C20—C21—C16 | 116.5 (3) |
C5—C4—C3 | 117.4 (3) | C20—C21—Br1 | 121.7 (3) |
C5—C4—C8 | 121.3 (3) | C16—C21—Br1 | 121.8 (3) |
C3—C4—C8 | 121.3 (3) | C18—N22—C27 | 122.5 (3) |
C4—C5—C6 | 122.9 (3) | C18—N22—C23 | 120.3 (3) |
C4—C5—H5 | 118.6 | C27—N22—C23 | 111.8 (3) |
C6—C5—H5 | 118.6 | N22—C23—C24 | 108.8 (3) |
C5—C6—C1 | 118.1 (3) | N22—C23—H23A | 109.9 |
C5—C6—C7 | 115.8 (3) | C24—C23—H23A | 109.9 |
C1—C6—C7 | 126.0 (3) | N22—C23—H23B | 109.9 |
C6—C7—H7A | 109.5 | C24—C23—H23B | 109.9 |
C6—C7—H7B | 109.5 | H23A—C23—H23B | 108.3 |
H7A—C7—H7B | 109.5 | O25—C24—C23 | 110.5 (3) |
C6—C7—H7C | 109.5 | O25—C24—H24A | 109.6 |
H7A—C7—H7C | 109.5 | C23—C24—H24A | 109.6 |
H7B—C7—H7C | 109.5 | O25—C24—H24B | 109.6 |
C4—C8—H8A | 109.5 | C23—C24—H24B | 109.6 |
C4—C8—H8B | 109.5 | H24A—C24—H24B | 108.1 |
H8A—C8—H8B | 109.5 | C26—O25—C24 | 111.1 (3) |
C4—C8—H8C | 109.5 | O3—C25—H25A | 109.5 |
H8A—C8—H8C | 109.5 | O3—C25—H25B | 109.5 |
H8B—C8—H8C | 109.5 | H25A—C25—H25B | 109.5 |
C2—C9—H9A | 109.5 | O3—C25—H25C | 109.5 |
C2—C9—H9B | 109.5 | H25A—C25—H25C | 109.5 |
H9A—C9—H9B | 109.5 | H25B—C25—H25C | 109.5 |
C2—C9—H9C | 109.5 | O25—C26—C27 | 111.6 (3) |
H9A—C9—H9C | 109.5 | O25—C26—H26A | 109.3 |
H9B—C9—H9C | 109.5 | C27—C26—H26A | 109.3 |
C11—C10—C15 | 117.7 (3) | O25—C26—H26B | 109.3 |
C11—C10—N1 | 120.4 (3) | C27—C26—H26B | 109.3 |
C15—C10—N1 | 121.9 (3) | H26A—C26—H26B | 108.0 |
C12—C11—C10 | 121.6 (3) | N22—C27—C26 | 110.5 (3) |
C12—C11—H11 | 119.2 | N22—C27—H27A | 109.6 |
C10—C11—H11 | 119.2 | C26—C27—H27A | 109.6 |
C11—C12—C13 | 120.2 (3) | N22—C27—H27B | 109.6 |
C11—C12—H12 | 119.9 | C26—C27—H27B | 109.6 |
C13—C12—H12 | 119.9 | H27A—C27—H27B | 108.1 |
O3—C13—C14 | 125.2 (3) | ||
O2—S1—N1—C10 | −54.4 (3) | C13—C14—C15—C10 | −3.0 (5) |
O1—S1—N1—C10 | 178.7 (2) | C13—C14—C15—S2 | 179.5 (2) |
C1—S1—N1—C10 | 62.6 (3) | C11—C10—C15—C14 | 1.5 (4) |
O2—S1—C1—C6 | −165.8 (2) | N1—C10—C15—C14 | −176.3 (3) |
O1—S1—C1—C6 | −34.8 (3) | C11—C10—C15—S2 | 179.0 (2) |
N1—S1—C1—C6 | 78.2 (3) | N1—C10—C15—S2 | 1.2 (4) |
O2—S1—C1—C2 | 15.5 (3) | C16—S2—C15—C14 | −65.8 (3) |
O1—S1—C1—C2 | 146.6 (3) | C16—S2—C15—C10 | 116.7 (3) |
N1—S1—C1—C2 | −100.5 (3) | C15—S2—C16—N17 | −4.9 (3) |
C6—C1—C2—C3 | 1.8 (5) | C15—S2—C16—C21 | 174.0 (3) |
S1—C1—C2—C3 | −179.6 (2) | C21—C16—N17—C18 | −1.8 (4) |
C6—C1—C2—C9 | −177.5 (3) | S2—C16—N17—C18 | 177.1 (2) |
S1—C1—C2—C9 | 1.2 (5) | C16—N17—C18—N19 | −0.7 (5) |
C1—C2—C3—C4 | −1.0 (5) | C16—N17—C18—N22 | 177.5 (3) |
C9—C2—C3—C4 | 178.3 (3) | N17—C18—N19—C20 | 1.6 (5) |
C2—C3—C4—C5 | −0.7 (5) | N22—C18—N19—C20 | −176.6 (3) |
C2—C3—C4—C8 | −179.0 (3) | C18—N19—C20—C21 | 0.1 (6) |
C3—C4—C5—C6 | 1.8 (5) | N19—C20—C21—C16 | −2.4 (5) |
C8—C4—C5—C6 | 180.0 (3) | N19—C20—C21—Br1 | 178.1 (3) |
C4—C5—C6—C1 | −1.0 (5) | N17—C16—C21—C20 | 3.3 (5) |
C4—C5—C6—C7 | 179.3 (3) | S2—C16—C21—C20 | −175.6 (3) |
C2—C1—C6—C5 | −0.8 (5) | N17—C16—C21—Br1 | −177.2 (2) |
S1—C1—C6—C5 | −179.5 (2) | S2—C16—C21—Br1 | 3.9 (4) |
C2—C1—C6—C7 | 178.9 (3) | N17—C18—N22—C27 | 165.2 (3) |
S1—C1—C6—C7 | 0.2 (4) | N19—C18—N22—C27 | −16.4 (5) |
S1—N1—C10—C11 | 67.5 (4) | N17—C18—N22—C23 | 13.2 (5) |
S1—N1—C10—C15 | −114.8 (3) | N19—C18—N22—C23 | −168.4 (3) |
C15—C10—C11—C12 | 0.7 (5) | C18—N22—C23—C24 | 98.4 (4) |
N1—C10—C11—C12 | 178.5 (3) | C27—N22—C23—C24 | −56.4 (4) |
C10—C11—C12—C13 | −1.4 (5) | N22—C23—C24—O25 | 59.2 (4) |
C25—O3—C13—C14 | −5.5 (5) | C23—C24—O25—C26 | −60.5 (4) |
C25—O3—C13—C12 | 173.0 (3) | C24—O25—C26—C27 | 57.3 (5) |
C11—C12—C13—O3 | −178.6 (3) | C18—N22—C27—C26 | −100.5 (4) |
C11—C12—C13—C14 | −0.1 (5) | C23—N22—C27—C26 | 53.6 (4) |
O3—C13—C14—C15 | −179.3 (3) | O25—C26—C27—N22 | −53.4 (4) |
C12—C13—C14—C15 | 2.3 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O25i | 0.86 | 2.09 | 2.890 (4) | 155 |
Symmetry code: (i) −x+3/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C24H27BrN4O4S2 |
Mr | 579.53 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.2583 (4), 17.4727 (6), 14.4375 (7) |
β (°) | 97.199 (4) |
V (Å3) | 2567.38 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.80 |
Crystal size (mm) | 0.3 × 0.2 × 0.2 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Sapphire3 diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.526, 0.697 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19056, 5023, 3359 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.105, 1.02 |
No. of reflections | 5023 |
No. of parameters | 321 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.39 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), CrysAlis PRO (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O25i | 0.86 | 2.09 | 2.890 (4) | 155 |
Symmetry code: (i) −x+3/2, y−1/2, −z+1/2. |
Acknowledgements
MK acknowledges the help of Bahubali College of Engineering, Shravanabelagola for his research work. RK acknowledges the Department of Science & Technology for the single-crystal X-ray diffractometer sanctioned as a National Facility under project No. SR/S2/CMP-47/2003.
References
Akkurt, M., Mariam, I., Naseer, I., Khan, I. U. & Sharif, S. (2011). Acta Cryst. E67, o186. Web of Science CrossRef IUCr Journals Google Scholar
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Duax, W. L. & Norton, D. A. (1975). Atlas of Steroid Structures, Vol. 1. New York: Plenum Press. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Kant, R., Gupta, V. K., Kapoor, K., Kumar, M., Mallesha, L. & Sridhar, M. A. (2012). Acta Cryst. E68, o2590–o2591. CSD CrossRef IUCr Journals Google Scholar
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Rodrigues, V. Z., Foro, S. & Gowda, B. T. (2011). Acta Cryst. E67, o2891. Web of Science CSD CrossRef IUCr Journals Google Scholar
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Bond lengths and angles in the title compound (Fig. 1) have normal values (Allen et al., 1987) and are comparable with the similar crystal structures (Rodrigues et al., 2011; Akkurt et al., 2011; Kant et al., 2012). The molecule is twisted at the S atom with the C2—S1—N1—C10 torsion angle of 62.6 (3)°. The morpholine ring is exhibiting chair conformation (asymmetry parameters are: [ΔC2(N22—C27) = 2.51; ΔCs(C24—C27) = 0.92] (Duax & Norton, 1975). The benzene C1–C6 and C10–C15 rings are tilted relative to each other by 60.6 (1)° and the dihedral angle between the sulfur bridged pyrimidine and benzene rings is 62.7 (1) °. The molecular conformation is stabilized by a weak intramolecular π–π stacking interaction between the pyrimidine C16/N17/C18/N19/C20/C21 ring (centroid Cg1) and the 2,4,6-trimethyl benzene C1–C6 ring (centroid Cg2) [Cg1···Cg2 3.793 (2) Å, perpendicular distance of Cg1 on the C1–C6 ring 3.5103 (13) Å and perpendicular distance of Cg2 on the C16/N17/C18/N19/C20/C21 ring 3.3905 (12) Å]. In the crystal, molecules are linked into chains by N1—H1···O25 hydrogen bonds (Table 1 and Fig. 2).