metal-organic compounds
Bis(2,2′-bipyrimidine-κ2N1,N1′)palladium(II) bis(tetrafluoroborate) acetonitrile monosolvate
aDépartement de Chimie, Université de Montréal, 2900 Boulevard Édouard-Montpetit, Montréal, Québec, Canada H3C 3J7
*Correspondence e-mail: thierry.maris@umontreal.ca
The reaction of [Pd(MeCN)4](BF4)2 with 2,2′-bipyrimidine (bpm) in MeCN–CHCl3 afforded the title compound, [Pd(C8H6N4)2](BF4)2·C2H3N. The contains two half complexes, with the PdII atoms both lying on a twofold axis. Each metal atom adopts a tetrahedrally distorted square-planar geometry. In the crystal, [Pd(bpm)2] dications are linked by C—H⋯N hydrogen bonds, forming chains parallel to the b axis. The chains are further linked by C—H⋯F and C—H⋯N interactions involving the tetrafluoroborate anions and acetonitrile molecules. In this way, each chain interacts with six surrounding chains to generate the observed three-dimensional structure.
Related literature
Similar Pd(bpm)2 complexes are unknown, but the subject of related dicationic adducts of PdII with 2,2′-bipyridyl (bpy) has been reviewed by Constable (1989) and McKenzie (1971), and the structures of representative analogues have been reported by Chieh (1972), Duong et al. (2011), Gao et al. (2010), Geremia et al. (1992), Hinamoto et al. (1972), Maeda et al. (1986), Milani et al. (1997), Stoccoro et al. (2002), Wehman et al. (1994) and Yue et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2003); cell SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002); software used to prepare material for publication: UdMX (Maris, 2004) and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812041591/rz5009sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812041591/rz5009Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812041591/rz5009Isup3.cdx
Solid [Pd(MeCN)4](BF4)2 (71 mg, 0.16 mmol) was added at 25 °C to a stirred mixture of MeCN (2.5 ml) and CHCl3 (2.5 ml) containing 2,2'-bipyrimidine (50 mg, 0.32 mmol). The resulting mixture quickly turned yellow, and a yellow solid began to precipitate. After the suspension had been stirred for 2 h, volatiles were removed by evaporation under reduced pressure, and the residual yellow solid was washed with MeCN. Crystals of the title complex were obtained in 70% yield by allowing vapors of MeCN to diffuse slowly into a solution of the yellow solid in DMSO.
All H-atoms were placed in calculated positions (C—H 0.95–0.98 Å) and were included in the
in the riding model approximation, with U(H) set to 1.2Ueq(C) for hydrogen atoms bonded to sp2-hybridized carbon atoms and 1.5Ueq(C) for hydrogen atoms bonded to sp3-hybridized carbon atoms.Data collection: SMART (Bruker, 2003); cell
SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002); software used to prepare material for publication: UdMX (Maris, 2004) and publCIF (Westrip, 2010).Fig. 1. Molecular structure of the title compound, with atomic labels and 50% probability displacement ellipsoids for non-hydrogen atoms. Hydrogen atoms are drawn as a sphere of arbitrary radius. Unlabelled atoms in the cationic complexes are related by the symmetry operations 1 - x, y, -z + 1/2 for Pd1 and -x, y, -z + 1/2 for Pd2. | |
Fig. 2. View along the a-axis of a chain of cationic complexes, with C—H···N interactions shown as broken lines. | |
Fig. 3. View along the b-axis of the unit-cell content. C—H···N and C—H···F contacts are shown as dashed lines. |
[Pd(C8H6N4)2](BF4)2·C2H3N | F(000) = 2512 |
Mr = 637.41 | Dx = 1.840 Mg m−3 |
Monoclinic, C2/c | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -C 2yc | Cell parameters from 20829 reflections |
a = 18.0686 (4) Å | θ = 3.6–68.8° |
b = 18.1126 (4) Å | µ = 7.38 mm−1 |
c = 14.8351 (3) Å | T = 200 K |
β = 108.613 (1)° | Block, yellow |
V = 4601.13 (17) Å3 | 0.20 × 0.11 × 0.10 mm |
Z = 8 |
Bruker SMART 6000 diffractometer | 4246 independent reflections |
Radiation source: Rotating anode | 4006 reflections with I > 2σ(I) |
Montel 200 optics monochromator | Rint = 0.031 |
Detector resolution: 5.5 pixels mm-1 | θmax = 68.9°, θmin = 3.6° |
ω scans | h = −21→21 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | k = −20→21 |
Tmin = 0.311, Tmax = 0.478 | l = −17→17 |
31076 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0458P)2 + 11.6117P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.002 |
4246 reflections | Δρmax = 1.07 e Å−3 |
347 parameters | Δρmin = −0.75 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.000355 (19) |
[Pd(C8H6N4)2](BF4)2·C2H3N | V = 4601.13 (17) Å3 |
Mr = 637.41 | Z = 8 |
Monoclinic, C2/c | Cu Kα radiation |
a = 18.0686 (4) Å | µ = 7.38 mm−1 |
b = 18.1126 (4) Å | T = 200 K |
c = 14.8351 (3) Å | 0.20 × 0.11 × 0.10 mm |
β = 108.613 (1)° |
Bruker SMART 6000 diffractometer | 4246 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 4006 reflections with I > 2σ(I) |
Tmin = 0.311, Tmax = 0.478 | Rint = 0.031 |
31076 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.081 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0458P)2 + 11.6117P] where P = (Fo2 + 2Fc2)/3 |
4246 reflections | Δρmax = 1.07 e Å−3 |
347 parameters | Δρmin = −0.75 e Å−3 |
Experimental. X-ray crystallographic data for I were collected from a single-crystal sample, which was mounted on a loop fiber. Data were collected using a Bruker Platform diffractometer, equipped with a Bruker SMART 4 K Charged-Coupled Device (CCD) Area Detector using the program APEX2 and a Nonius FR591 rotating anode equipped with Montel 200 optics. The crystal-to-detector distance was 5.0 cm, and the data collection was carried out in 512 x 512 pixel mode. The initial unit-cell parameters were determined by a least-squares fit of the angular setting of strong reflections, collected by a 10.0 degree scan in 33 frames over four different parts of the reciprocal space (132 frames total). One complete sphere of data was collected to better than 0.80 Å resolution. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l. s. planes) were estimated using the full covariance matrix. The cell e.s.d.'s were taken into account individually in the estimation of e.s.d.'s in distances, angles, and torsion angles; correlations between e.s.d.'s in cell parameters were only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s was used for estimating e.s.d.'s involving l. s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness-of-fit S are based on F2 and conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Pd1 | 0.5000 | 0.336135 (12) | 0.2500 | 0.02227 (10) | |
N1 | 0.44850 (12) | 0.40551 (11) | 0.13874 (15) | 0.0244 (4) | |
C1 | 0.46387 (15) | 0.47710 (14) | 0.13047 (19) | 0.0294 (5) | |
H1 | 0.5006 | 0.5018 | 0.1821 | 0.035* | |
C2 | 0.42721 (17) | 0.51534 (15) | 0.0482 (2) | 0.0359 (6) | |
H2 | 0.4374 | 0.5662 | 0.0422 | 0.043* | |
C3 | 0.37529 (18) | 0.47724 (17) | −0.0249 (2) | 0.0408 (7) | |
H3 | 0.3476 | 0.5032 | −0.0812 | 0.049* | |
N3 | 0.36210 (15) | 0.40471 (13) | −0.01994 (16) | 0.0369 (5) | |
C4 | 0.39986 (14) | 0.37213 (14) | 0.06120 (17) | 0.0277 (5) | |
C5 | 0.38836 (14) | 0.29190 (14) | 0.07200 (17) | 0.0269 (5) | |
N5 | 0.42993 (12) | 0.26406 (11) | 0.15719 (15) | 0.0271 (4) | |
C6 | 0.41328 (16) | 0.19506 (14) | 0.1769 (2) | 0.0364 (6) | |
H6 | 0.4384 | 0.1749 | 0.2381 | 0.044* | |
C7 | 0.35997 (17) | 0.15308 (15) | 0.1090 (2) | 0.0399 (7) | |
H7 | 0.3477 | 0.1041 | 0.1223 | 0.048* | |
C8 | 0.32526 (15) | 0.18455 (16) | 0.0217 (2) | 0.0367 (6) | |
H8 | 0.2909 | 0.1555 | −0.0272 | 0.044* | |
N8 | 0.33807 (13) | 0.25488 (13) | 0.00285 (16) | 0.0340 (5) | |
Pd2 | 0.0000 | 0.339164 (12) | 0.2500 | 0.02379 (10) | |
N9 | 0.06638 (12) | 0.25370 (11) | 0.23195 (15) | 0.0278 (4) | |
C9 | 0.13999 (16) | 0.25769 (15) | 0.2297 (2) | 0.0349 (6) | |
H9 | 0.1621 | 0.3045 | 0.2248 | 0.042* | |
C10 | 0.18357 (18) | 0.19496 (17) | 0.2344 (2) | 0.0429 (7) | |
H10 | 0.2356 | 0.1974 | 0.2327 | 0.051* | |
C11 | 0.14925 (18) | 0.12859 (16) | 0.2417 (2) | 0.0433 (7) | |
H11 | 0.1779 | 0.0844 | 0.2428 | 0.052* | |
N11 | 0.07683 (15) | 0.12380 (12) | 0.24733 (18) | 0.0382 (5) | |
C12 | 0.03914 (15) | 0.18649 (14) | 0.24370 (18) | 0.0287 (5) | |
N12 | 0.04299 (12) | 0.42452 (11) | 0.19429 (15) | 0.0257 (4) | |
C13 | 0.07712 (16) | 0.42029 (14) | 0.12669 (19) | 0.0314 (6) | |
H13 | 0.0896 | 0.3733 | 0.1070 | 0.038* | |
C14 | 0.09431 (17) | 0.48312 (16) | 0.0854 (2) | 0.0364 (6) | |
H14 | 0.1184 | 0.4806 | 0.0372 | 0.044* | |
C15 | 0.07533 (17) | 0.54960 (16) | 0.1164 (2) | 0.0393 (6) | |
H15 | 0.0890 | 0.5937 | 0.0909 | 0.047* | |
N15 | 0.03809 (14) | 0.55468 (12) | 0.18145 (17) | 0.0349 (5) | |
C16 | 0.02226 (14) | 0.49198 (13) | 0.21627 (18) | 0.0274 (5) | |
B1 | 0.2913 (2) | 0.4231 (2) | 0.2178 (3) | 0.0447 (9) | |
F1 | 0.27658 (12) | 0.46150 (13) | 0.13349 (14) | 0.0621 (5) | |
F2 | 0.36425 (10) | 0.43957 (11) | 0.27788 (13) | 0.0496 (5) | |
F3 | 0.28788 (19) | 0.34813 (14) | 0.19523 (19) | 0.0962 (10) | |
F4 | 0.23745 (14) | 0.4387 (3) | 0.26137 (17) | 0.1125 (13) | |
B2 | 0.0691 (2) | 0.24786 (18) | 0.5158 (2) | 0.0373 (7) | |
F5 | 0.09817 (13) | 0.24491 (16) | 0.44108 (15) | 0.0749 (7) | |
F6 | 0.00661 (12) | 0.29637 (11) | 0.49624 (17) | 0.0644 (6) | |
F7 | 0.04445 (17) | 0.17898 (12) | 0.5299 (2) | 0.0885 (9) | |
F8 | 0.12677 (16) | 0.27183 (14) | 0.59487 (17) | 0.0869 (8) | |
N16 | 0.35521 (18) | 0.04534 (18) | 0.5904 (2) | 0.0563 (8) | |
C17 | 0.3079 (2) | 0.08800 (18) | 0.5644 (2) | 0.0446 (7) | |
C18 | 0.2469 (2) | 0.1432 (2) | 0.5312 (4) | 0.0771 (13) | |
H18A | 0.2098 | 0.1274 | 0.4703 | 0.116* | |
H18B | 0.2703 | 0.1905 | 0.5229 | 0.116* | |
H18C | 0.2195 | 0.1489 | 0.5781 | 0.116* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd1 | 0.02316 (15) | 0.01678 (15) | 0.02304 (15) | 0.000 | 0.00197 (10) | 0.000 |
N1 | 0.0241 (10) | 0.0227 (10) | 0.0262 (10) | 0.0030 (8) | 0.0075 (8) | 0.0017 (8) |
C1 | 0.0293 (12) | 0.0249 (13) | 0.0352 (14) | 0.0010 (10) | 0.0118 (11) | 0.0013 (10) |
C2 | 0.0417 (15) | 0.0280 (14) | 0.0422 (15) | 0.0048 (11) | 0.0193 (13) | 0.0103 (11) |
C3 | 0.0503 (17) | 0.0391 (16) | 0.0316 (14) | 0.0103 (13) | 0.0112 (12) | 0.0129 (12) |
N3 | 0.0430 (13) | 0.0380 (13) | 0.0259 (11) | 0.0062 (10) | 0.0055 (10) | 0.0034 (9) |
C4 | 0.0266 (12) | 0.0297 (13) | 0.0269 (12) | 0.0028 (10) | 0.0086 (10) | −0.0010 (10) |
C5 | 0.0244 (12) | 0.0282 (13) | 0.0277 (12) | 0.0023 (10) | 0.0076 (10) | −0.0030 (10) |
N5 | 0.0262 (10) | 0.0215 (10) | 0.0294 (10) | 0.0004 (8) | 0.0030 (8) | −0.0033 (8) |
C6 | 0.0362 (14) | 0.0235 (13) | 0.0415 (15) | −0.0010 (11) | 0.0014 (12) | 0.0010 (11) |
C7 | 0.0330 (15) | 0.0244 (13) | 0.0557 (18) | −0.0030 (11) | 0.0050 (13) | −0.0044 (12) |
C8 | 0.0276 (13) | 0.0324 (14) | 0.0448 (16) | −0.0021 (11) | 0.0041 (11) | −0.0160 (12) |
N8 | 0.0284 (11) | 0.0375 (13) | 0.0320 (11) | 0.0020 (9) | 0.0039 (9) | −0.0083 (10) |
Pd2 | 0.02831 (16) | 0.01530 (15) | 0.03000 (16) | 0.000 | 0.01245 (11) | 0.000 |
N9 | 0.0341 (11) | 0.0218 (10) | 0.0297 (10) | 0.0020 (9) | 0.0133 (9) | 0.0000 (8) |
C9 | 0.0360 (14) | 0.0297 (14) | 0.0423 (15) | 0.0015 (11) | 0.0169 (12) | 0.0030 (11) |
C10 | 0.0393 (16) | 0.0415 (17) | 0.0533 (18) | 0.0082 (13) | 0.0224 (14) | 0.0001 (14) |
C11 | 0.0466 (17) | 0.0298 (15) | 0.0564 (18) | 0.0111 (12) | 0.0204 (14) | −0.0024 (13) |
N11 | 0.0448 (13) | 0.0221 (11) | 0.0487 (14) | 0.0042 (10) | 0.0161 (11) | −0.0022 (10) |
C12 | 0.0351 (14) | 0.0219 (12) | 0.0296 (13) | −0.0001 (10) | 0.0109 (10) | −0.0011 (10) |
N12 | 0.0276 (11) | 0.0205 (10) | 0.0288 (10) | −0.0008 (8) | 0.0084 (9) | 0.0008 (8) |
C13 | 0.0348 (14) | 0.0276 (13) | 0.0332 (14) | 0.0006 (10) | 0.0129 (11) | 0.0015 (10) |
C14 | 0.0379 (14) | 0.0366 (15) | 0.0375 (14) | −0.0008 (12) | 0.0161 (12) | 0.0067 (12) |
C15 | 0.0422 (15) | 0.0306 (14) | 0.0464 (16) | −0.0036 (12) | 0.0161 (13) | 0.0106 (12) |
N15 | 0.0413 (13) | 0.0222 (11) | 0.0414 (13) | −0.0026 (9) | 0.0136 (10) | 0.0031 (9) |
C16 | 0.0291 (12) | 0.0197 (12) | 0.0303 (12) | −0.0006 (10) | 0.0049 (10) | −0.0003 (10) |
B1 | 0.0313 (17) | 0.070 (2) | 0.0338 (17) | −0.0178 (16) | 0.0122 (14) | −0.0100 (16) |
F1 | 0.0564 (12) | 0.0816 (15) | 0.0497 (11) | 0.0054 (11) | 0.0191 (9) | 0.0139 (10) |
F2 | 0.0344 (9) | 0.0654 (12) | 0.0463 (10) | −0.0109 (8) | 0.0090 (8) | −0.0200 (9) |
F3 | 0.128 (2) | 0.0692 (16) | 0.0691 (16) | −0.0514 (16) | −0.0002 (15) | −0.0088 (12) |
F4 | 0.0420 (12) | 0.251 (4) | 0.0502 (13) | 0.0151 (18) | 0.0228 (11) | −0.0055 (18) |
B2 | 0.0413 (17) | 0.0302 (16) | 0.0408 (17) | 0.0011 (13) | 0.0135 (14) | 0.0002 (13) |
F5 | 0.0584 (13) | 0.119 (2) | 0.0545 (12) | 0.0111 (13) | 0.0274 (10) | 0.0160 (13) |
F6 | 0.0525 (12) | 0.0496 (12) | 0.0871 (15) | 0.0149 (9) | 0.0167 (11) | 0.0021 (11) |
F7 | 0.105 (2) | 0.0334 (10) | 0.157 (3) | −0.0061 (12) | 0.084 (2) | −0.0008 (14) |
F8 | 0.0868 (17) | 0.0793 (17) | 0.0655 (14) | 0.0202 (13) | −0.0165 (12) | −0.0219 (12) |
N16 | 0.0577 (18) | 0.070 (2) | 0.0405 (15) | 0.0225 (16) | 0.0146 (13) | −0.0056 (14) |
C17 | 0.0408 (17) | 0.052 (2) | 0.0403 (17) | 0.0031 (14) | 0.0113 (14) | −0.0006 (13) |
C18 | 0.047 (2) | 0.060 (2) | 0.117 (4) | 0.0100 (19) | 0.017 (2) | 0.030 (3) |
Pd1—N5i | 2.022 (2) | C9—H9 | 0.9500 |
Pd1—N5 | 2.022 (2) | C10—C11 | 1.372 (5) |
Pd1—N1 | 2.047 (2) | C10—H10 | 0.9500 |
Pd1—N1i | 2.047 (2) | C11—N11 | 1.340 (4) |
N1—C1 | 1.340 (3) | C11—H11 | 0.9500 |
N1—C4 | 1.348 (3) | N11—C12 | 1.316 (3) |
C1—C2 | 1.375 (4) | C12—C12ii | 1.485 (5) |
C1—H1 | 0.9500 | N12—C13 | 1.337 (3) |
C2—C3 | 1.372 (4) | N12—C16 | 1.348 (3) |
C2—H2 | 0.9500 | C13—C14 | 1.374 (4) |
C3—N3 | 1.341 (4) | C13—H13 | 0.9500 |
C3—H3 | 0.9500 | C14—C15 | 1.371 (4) |
N3—C4 | 1.318 (3) | C14—H14 | 0.9500 |
C4—C5 | 1.484 (4) | C15—N15 | 1.345 (4) |
C5—N8 | 1.316 (3) | C15—H15 | 0.9500 |
C5—N5 | 1.345 (3) | N15—C16 | 1.316 (3) |
N5—C6 | 1.339 (3) | C16—C16ii | 1.471 (5) |
C6—C7 | 1.378 (4) | B1—F4 | 1.357 (4) |
C6—H6 | 0.9500 | B1—F2 | 1.368 (4) |
C7—C8 | 1.369 (4) | B1—F1 | 1.381 (4) |
C7—H7 | 0.9500 | B1—F3 | 1.396 (5) |
C8—N8 | 1.340 (4) | B2—F7 | 1.363 (4) |
C8—H8 | 0.9500 | B2—F8 | 1.368 (4) |
Pd2—N12 | 2.021 (2) | B2—F5 | 1.371 (4) |
Pd2—N12ii | 2.021 (2) | B2—F6 | 1.386 (4) |
Pd2—N9 | 2.028 (2) | N16—C17 | 1.125 (4) |
Pd2—N9ii | 2.028 (2) | C17—C18 | 1.452 (5) |
N9—C9 | 1.343 (3) | C18—H18a | 0.9800 |
N9—C12 | 1.345 (3) | C18—H18b | 0.9800 |
C9—C10 | 1.372 (4) | C18—H18c | 0.9800 |
N5i—PD1—N5 | 99.59 (11) | N9—C9—H9 | 119.6 |
N5i—PD1—N1 | 165.94 (8) | C10—C9—H9 | 119.6 |
N5—PD1—N1 | 79.78 (8) | C9—C10—C11 | 117.6 (3) |
N5i—PD1—N1i | 79.78 (8) | C9—C10—H10 | 121.2 |
N5—PD1—N1i | 165.94 (8) | C11—C10—H10 | 121.2 |
N1—PD1—N1i | 104.24 (11) | N11—C11—C10 | 122.4 (3) |
C1—N1—C4 | 117.0 (2) | N11—C11—H11 | 118.8 |
C1—N1—PD1 | 127.87 (17) | C10—C11—H11 | 118.8 |
C4—N1—PD1 | 114.69 (16) | C12—N11—C11 | 116.4 (2) |
N1—C1—C2 | 120.9 (2) | N11—C12—N9 | 125.4 (2) |
N1—C1—H1 | 119.6 | N11—C12—C12ii | 119.74 (16) |
C2—C1—H1 | 119.6 | N9—C12—C12ii | 114.78 (14) |
C3—C2—C1 | 117.5 (3) | C13—N12—C16 | 117.6 (2) |
C3—C2—H2 | 121.2 | C13—N12—PD2 | 126.33 (17) |
C1—C2—H2 | 121.2 | C16—N12—PD2 | 114.94 (17) |
N3—C3—C2 | 122.5 (3) | N12—C13—C14 | 120.7 (2) |
N3—C3—H3 | 118.7 | N12—C13—H13 | 119.6 |
C2—C3—H3 | 118.7 | C14—C13—H13 | 119.6 |
C4—N3—C3 | 116.1 (2) | C15—C14—C13 | 117.5 (3) |
N3—C4—N1 | 125.8 (2) | C15—C14—H14 | 121.2 |
N3—C4—C5 | 119.2 (2) | C13—C14—H14 | 121.2 |
N1—C4—C5 | 115.0 (2) | N15—C15—C14 | 122.5 (2) |
N8—C5—N5 | 125.5 (2) | N15—C15—H15 | 118.8 |
N8—C5—C4 | 120.0 (2) | C14—C15—H15 | 118.8 |
N5—C5—C4 | 114.4 (2) | C16—N15—C15 | 116.3 (2) |
C6—N5—C5 | 117.2 (2) | N15—C16—N12 | 125.1 (2) |
C6—N5—PD1 | 126.12 (18) | N15—C16—C16ii | 120.10 (15) |
C5—N5—PD1 | 115.98 (16) | N12—C16—C16ii | 114.78 (14) |
N5—C6—C7 | 120.6 (3) | F4—B1—F2 | 109.5 (3) |
N5—C6—H6 | 119.7 | F4—B1—F1 | 111.5 (3) |
C7—C6—H6 | 119.7 | F2—B1—F1 | 110.3 (3) |
C8—C7—C6 | 117.6 (3) | F4—B1—F3 | 109.5 (3) |
C8—C7—H7 | 121.2 | F2—B1—F3 | 109.1 (3) |
C6—C7—H7 | 121.2 | F1—B1—F3 | 106.9 (3) |
N8—C8—C7 | 122.4 (2) | F7—B2—F8 | 110.8 (3) |
N8—C8—H8 | 118.8 | F7—B2—F5 | 108.5 (3) |
C7—C8—H8 | 118.8 | F8—B2—F5 | 108.8 (3) |
C5—N8—C8 | 116.3 (2) | F7—B2—F6 | 109.2 (3) |
N12—PD2—N12ii | 80.22 (12) | F8—B2—F6 | 109.0 (3) |
N12—PD2—N9 | 102.08 (8) | F5—B2—F6 | 110.6 (3) |
N12ii—PD2—N9 | 163.44 (9) | N16—C17—C18 | 179.7 (4) |
N12—PD2—N9ii | 163.44 (9) | C17—C18—H18A | 109.5 |
N12ii—PD2—N9ii | 102.08 (8) | C17—C18—H18B | 109.5 |
N9—PD2—N9ii | 80.47 (12) | H18A—C18—H18B | 109.5 |
C9—N9—C12 | 117.3 (2) | C17—C18—H18C | 109.5 |
C9—N9—PD2 | 126.46 (18) | H18A—C18—H18C | 109.5 |
C12—N9—PD2 | 114.67 (17) | H18B—C18—H18C | 109.5 |
N9—C9—C10 | 120.7 (3) |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N11iii | 0.95 | 2.62 | 3.460 (4) | 148 |
C6—H6···N15iv | 0.95 | 2.45 | 3.237 (4) | 140 |
C14—H14···N16v | 0.95 | 2.40 | 3.228 (4) | 146 |
C2—H2···F7v | 0.95 | 2.38 | 3.282 (3) | 159 |
C3—H3···F2vi | 0.95 | 2.44 | 3.240 (3) | 142 |
C8—H8···F3vii | 0.95 | 2.45 | 3.270 (4) | 145 |
C13—H13···F6ii | 0.95 | 2.37 | 2.982 (3) | 122 |
C15—H15···F8vi | 0.95 | 2.52 | 3.408 (4) | 155 |
C18—H18B···F5viii | 0.98 | 2.55 | 3.373 (5) | 142 |
Symmetry codes: (ii) −x, y, −z+1/2; (iii) x+1/2, y+1/2, z; (iv) −x+1/2, y−1/2, −z+1/2; (v) −x+1/2, y+1/2, −z+1/2; (vi) x, −y+1, z−1/2; (vii) −x+1/2, −y+1/2, −z; (viii) −x+1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Pd(C8H6N4)2](BF4)2·C2H3N |
Mr | 637.41 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 200 |
a, b, c (Å) | 18.0686 (4), 18.1126 (4), 14.8351 (3) |
β (°) | 108.613 (1) |
V (Å3) | 4601.13 (17) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 7.38 |
Crystal size (mm) | 0.20 × 0.11 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 6000 diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.311, 0.478 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31076, 4246, 4006 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.605 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.081, 1.03 |
No. of reflections | 4246 |
No. of parameters | 347 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.0458P)2 + 11.6117P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 1.07, −0.75 |
Computer programs: SMART (Bruker, 2003), SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and Materials Studio (Accelrys, 2002), UdMX (Maris, 2004) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N11i | 0.95 | 2.62 | 3.460 (4) | 147.6 |
C6—H6···N15ii | 0.95 | 2.45 | 3.237 (4) | 139.7 |
C14—H14···N16iii | 0.95 | 2.40 | 3.228 (4) | 145.5 |
C2—H2···F7iii | 0.95 | 2.38 | 3.282 (3) | 159.2 |
C3—H3···F2iv | 0.95 | 2.44 | 3.240 (3) | 142.3 |
C8—H8···F3v | 0.95 | 2.45 | 3.270 (4) | 145 |
C13—H13···F6vi | 0.95 | 2.37 | 2.982 (3) | 121.9 |
C15—H15···F8iv | 0.95 | 2.52 | 3.408 (4) | 154.8 |
C18—H18B···F5vii | 0.98 | 2.55 | 3.373 (5) | 141.8 |
Symmetry codes: (i) x+1/2, y+1/2, z; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2; (iv) x, −y+1, z−1/2; (v) −x+1/2, −y+1/2, −z; (vi) −x, y, −z+1/2; (vii) −x+1/2, −y+1/2, −z+1. |
Acknowledgements
We are grateful to the Natural Sciences and Engineering Research Council of Canada, the Ministère de l'Éducation du Québec, the Canada Foundation for Innovation, the Canada Research Chairs Program, and the Université de Montréal for financial support.
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The title compound was obtained and characterized in the course of a study of complexes of Pd(II) with chelating heterocyclic ligands (Duong et al., 2011). In the crystal structure, each PdII center is coordinated by two 2,2'-bipyrimidine (bpm) ligands to form two different distorted square-planar complexes (Figure 1). Distortions in such complexes arise because a normal square-planar geometry, which is inherently preferred by d8 metals, is opposed by steric interactions of the two ligands. As a result, related complexes of 2,2'-bipyridine (bpy) typically adopt one of two characteristic conformations: a so-called twisted geometry (involving a tetrahedral distortion of the metal center) and a bow-step deformation of the ligands themselves, as described by Constable (1989) and Milani et al. (1997). In the title compound, each of the two observed complexes incorporates approximately planar bpm ligands (maximum r. m. s. deviation 0.089 Å), and the geometry of coordination is twisted, with angles α of 21.52 (16)° and 25.80 (18)° between the N—Pd—N planes of the ligands. These values of α are similar to those found in analogous dicationic PdII(bpy)2 complexes with twisted geometries, as reported by Chieh (1972), Geremia et al. (1992), Hinamoto et al. (1972), Milani et al. (1997), Stoccoro et al. (2002), and Wehman et al. (1994). In addition, the average Pd—N distance is normal [2.030 (2) Å] (McKenzie, 1971).
The structure consists of chains of PdII(bpm)2 dications linked along the b-axis by C—H···N hydrogen bonds involving uncoordinated atoms of nitrogen (mean C—H···N distance: 3.348 (4) Å; Table 1), as shown in Figure 2. Within each chain, adjacent dications are arranged in an approximately orthogonal way (the dihedral angle between the N4 coordination cores is 89.01 (6)°). The tetrafluoroborate counterions are located between the chains and bridge them via weak C—H···F contacts to create the three-dimensional packing. Included molecules of MeCN are located close to the PdII centers, fill remaining volume, and engage in additional C—H···N interactions (Figure 3).