metal-organic compounds
cis-(2,2′-Bipyridine-κ2N,N′)bis(isonicotinamide-κN1)palladium(II) bis(hexafluoridophosphate)
aDepartment of Chemistry, University of the Incarnate Word, San Antonio, TX 78209, USA, bDepartment of Chemistry & Biochemistry, University of Oklahoma, Norman, OK 73019, USA, cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and dChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203 Jeddah, Saudi Arabia
*Correspondence e-mail: edward.tiekink@um.edu.my
In the title salt, [Pd(C10H8N2)(C6H6NO)2](PF6)2, the PdII atom is in a slightly distorted square-planar coordination environment by N atoms derived from two 4-pyridinecarboxamide ligands, in a cis disposition, and a chelating 2,2′-bipyridine molecule. The monodentate ligands are nearly orthogonal to each other [dihedral angle = 85.7 (5)°] and to the PdN4 plane [dihedral angles = 79.3 (3) and 78.7 (3)°]. The amide O atoms lie to opposite sides of the PdN4 plane. The most notable feature of the crystal packing is a linear supramolecular chain orientated approximately along [310] and formed via 16-membered {⋯HNCO}4 motifs. These are connected into a three-dimensional network by amide–H⋯O, F interactions. Both PF6− anions are disordered over two positions of equal occupancy in respect of the F atoms.
Related literature
For the synthesis of compounds with supramolecular structures involving et al. (2011); Moncol et al. (2007). For related palladium(II) complexes with isonicotinamide, see: Galstyan et al. (2011); Fujimura et al. (2004); Qin et al. (2001). For hydration of palladium-coordinated see: Sanchez et al. (2000).
as ligands, see: SunExperimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812043036/su2513sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812043036/su2513Isup2.hkl
Pd(bpy)(PF6)2 [bpy = 2,2'-bipyridine] was prepared by adding solid AgPF6 to an acetonitrile suspension of Pd(bpy)Cl2 (0.050 g, 0.15 mmol). After being stirred for 2 h, the mixture was filtered to remove AgCl. Isonicotinamide (0.037 g, 0.30 mmol) was added to the Pd(bpy)(PF6)2 solution and the solution was heated at 323 K for 3 h. Crystals were obtained by vapour diffusion of diethyl ether over an acetonitrile solution of the title complex [0.083 g, 85% yield; M.pt: 513 K (dec.), 523 K (melting)].
Ni and C-bound H-atoms were placed in calculated positions (N—H = 0.88 Å and C—H 0.95 Å) and were included in the
in the riding model approximation, with Uiso(H) = 1.2Uequiv(carrier atom). Both PF6 anions are disordered over two positions in respect of the F atoms only. The occupancy was assumed to be 1:1 as it could not be refined. The anisotropic displacement parameters of the F atoms were restrained to be nearly isotropic. Two reflections, i.e. (2 0 18) and (0 6 15), were omitted from the final owing to poor agreement.Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. The molecular structure of the cation in the title salt showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level. | |
Fig. 2. A view of the linear supramolecular chain mediated by N—H···O hydrogen bonds (orange dashed lines) along [13 5 -1] - see Table 1 for details. |
[Pd(C10H8N2)(C6H6NO2)2](PF6)2 | F(000) = 3152 |
Mr = 796.78 | Dx = 1.900 Mg m−3 |
Monoclinic, C2/c | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -C 2yc | Cell parameters from 4302 reflections |
a = 22.5920 (14) Å | θ = 3.8–68.1° |
b = 13.8299 (8) Å | µ = 7.55 mm−1 |
c = 17.9092 (12) Å | T = 100 K |
β = 95.269 (8)° | Rod, colourless |
V = 5572.0 (6) Å3 | 0.46 × 0.16 × 0.15 mm |
Z = 8 |
Bruker APEX CCD diffractometer | 5182 independent reflections |
Radiation source: fine-focus sealed tube | 3944 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.072 |
ϕ and ω scans | θmax = 69.8°, θmin = 3.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | h = −26→26 |
Tmin = 0.126, Tmax = 0.401 | k = −16→16 |
30116 measured reflections | l = −21→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.147 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0879P)2 + 9.8993P] where P = (Fo2 + 2Fc2)/3 |
5182 reflections | (Δ/σ)max = 0.001 |
520 parameters | Δρmax = 0.67 e Å−3 |
144 restraints | Δρmin = −0.78 e Å−3 |
[Pd(C10H8N2)(C6H6NO2)2](PF6)2 | V = 5572.0 (6) Å3 |
Mr = 796.78 | Z = 8 |
Monoclinic, C2/c | Cu Kα radiation |
a = 22.5920 (14) Å | µ = 7.55 mm−1 |
b = 13.8299 (8) Å | T = 100 K |
c = 17.9092 (12) Å | 0.46 × 0.16 × 0.15 mm |
β = 95.269 (8)° |
Bruker APEX CCD diffractometer | 5182 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 3944 reflections with I > 2σ(I) |
Tmin = 0.126, Tmax = 0.401 | Rint = 0.072 |
30116 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 144 restraints |
wR(F2) = 0.147 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.67 e Å−3 |
5182 reflections | Δρmin = −0.78 e Å−3 |
520 parameters |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Pd | 0.667091 (18) | 0.53803 (3) | 0.62000 (2) | 0.03743 (15) | |
P1 | 0.70718 (7) | 0.64260 (15) | 0.84670 (11) | 0.0532 (4) | |
P2 | 0.57543 (8) | 0.73478 (13) | 0.41320 (11) | 0.0519 (4) | |
F1 | 0.7509 (5) | 0.6745 (11) | 0.7858 (7) | 0.086 (3) | 0.50 |
F2 | 0.7240 (7) | 0.7410 (9) | 0.8898 (9) | 0.118 (4) | 0.50 |
F3 | 0.6661 (5) | 0.6128 (12) | 0.9038 (7) | 0.093 (4) | 0.50 |
F4 | 0.6999 (6) | 0.5423 (8) | 0.8021 (6) | 0.084 (3) | 0.50 |
F5 | 0.6557 (5) | 0.6892 (10) | 0.7948 (8) | 0.087 (4) | 0.50 |
F6 | 0.7629 (4) | 0.5972 (6) | 0.8934 (6) | 0.052 (2) | 0.50 |
F7 | 0.5623 (7) | 0.6485 (8) | 0.4674 (6) | 0.088 (3) | 0.50 |
F8 | 0.5449 (7) | 0.8077 (15) | 0.4605 (11) | 0.081 (5) | 0.50 |
F9 | 0.5970 (6) | 0.8181 (7) | 0.3611 (7) | 0.077 (3) | 0.50 |
F10 | 0.6113 (4) | 0.6573 (8) | 0.3638 (6) | 0.052 (2) | 0.50 |
F11 | 0.6403 (4) | 0.7503 (9) | 0.4640 (6) | 0.078 (3) | 0.50 |
F12 | 0.5198 (4) | 0.7132 (10) | 0.3636 (7) | 0.087 (3) | 0.50 |
F1' | 0.7399 (10) | 0.5757 (17) | 0.7956 (11) | 0.160 (7) | 0.50 |
F2' | 0.7296 (7) | 0.7305 (12) | 0.8075 (9) | 0.118 (5) | 0.50 |
F3' | 0.6705 (6) | 0.7100 (9) | 0.8982 (6) | 0.089 (3) | 0.50 |
F4' | 0.6788 (7) | 0.5562 (9) | 0.8956 (8) | 0.095 (4) | 0.50 |
F5' | 0.6495 (6) | 0.6323 (10) | 0.7903 (7) | 0.082 (3) | 0.50 |
F6' | 0.7612 (9) | 0.6409 (15) | 0.9077 (11) | 0.136 (7) | 0.50 |
F7' | 0.5639 (7) | 0.8201 (13) | 0.4737 (11) | 0.065 (4) | 0.50 |
F8' | 0.6250 (4) | 0.7947 (9) | 0.3815 (7) | 0.066 (3) | 0.50 |
F9' | 0.5184 (6) | 0.6781 (9) | 0.4411 (7) | 0.094 (3) | 0.50 |
F10' | 0.5814 (6) | 0.6529 (10) | 0.3528 (7) | 0.081 (3) | 0.50 |
F11' | 0.5277 (4) | 0.7880 (9) | 0.3518 (6) | 0.081 (3) | 0.50 |
F12' | 0.6163 (6) | 0.6839 (10) | 0.4707 (6) | 0.094 (3) | 0.50 |
O1 | 0.5848 (2) | 0.0479 (3) | 0.5984 (4) | 0.0706 (16) | |
O2 | 0.9674 (2) | 0.4298 (4) | 0.6755 (4) | 0.0730 (16) | |
N1 | 0.6458 (2) | 0.3976 (4) | 0.6254 (3) | 0.0426 (11) | |
N2 | 0.5616 (5) | 0.0829 (6) | 0.7123 (5) | 0.105 (3) | |
H1n | 0.5465 | 0.0249 | 0.7176 | 0.126* | |
H2n | 0.5616 | 0.1254 | 0.7488 | 0.126* | |
N3 | 0.7528 (2) | 0.4988 (4) | 0.6136 (3) | 0.0393 (11) | |
N4 | 0.9639 (3) | 0.4321 (6) | 0.5525 (5) | 0.086 (2) | |
H3n | 1.0022 | 0.4192 | 0.5553 | 0.103* | |
H4n | 0.9437 | 0.4393 | 0.5085 | 0.103* | |
N5 | 0.5835 (2) | 0.5845 (4) | 0.6278 (3) | 0.0459 (12) | |
N6 | 0.6826 (2) | 0.6815 (4) | 0.6218 (3) | 0.0407 (11) | |
C1 | 0.6372 (4) | 0.3601 (5) | 0.6929 (4) | 0.0602 (19) | |
H1 | 0.6435 | 0.3999 | 0.7361 | 0.072* | |
C2 | 0.6201 (4) | 0.2674 (5) | 0.7010 (4) | 0.0586 (18) | |
H2 | 0.6160 | 0.2428 | 0.7498 | 0.070* | |
C3 | 0.6084 (3) | 0.2081 (4) | 0.6399 (4) | 0.0455 (15) | |
C4 | 0.6180 (5) | 0.2470 (6) | 0.5720 (5) | 0.077 (3) | |
H4 | 0.6113 | 0.2087 | 0.5280 | 0.092* | |
C5 | 0.6369 (4) | 0.3400 (6) | 0.5663 (5) | 0.068 (2) | |
H5 | 0.6440 | 0.3644 | 0.5184 | 0.082* | |
C6 | 0.5854 (3) | 0.1070 (5) | 0.6467 (5) | 0.0577 (18) | |
C7 | 0.7775 (3) | 0.5003 (8) | 0.5506 (5) | 0.071 (2) | |
H7 | 0.7535 | 0.5146 | 0.5055 | 0.085* | |
C8 | 0.8376 (4) | 0.4816 (8) | 0.5470 (5) | 0.074 (3) | |
H8 | 0.8545 | 0.4856 | 0.5005 | 0.089* | |
C9 | 0.8717 (3) | 0.4578 (4) | 0.6095 (4) | 0.0468 (15) | |
C10 | 0.8457 (4) | 0.4501 (9) | 0.6735 (6) | 0.097 (4) | |
H10 | 0.8684 | 0.4304 | 0.7182 | 0.116* | |
C11 | 0.7862 (4) | 0.4707 (9) | 0.6746 (5) | 0.090 (3) | |
H11 | 0.7684 | 0.4646 | 0.7205 | 0.108* | |
C12 | 0.9376 (3) | 0.4405 (5) | 0.6127 (5) | 0.0546 (18) | |
C13 | 0.5341 (3) | 0.5284 (5) | 0.6259 (5) | 0.0560 (17) | |
H13 | 0.5372 | 0.4608 | 0.6179 | 0.067* | |
C14 | 0.4796 (3) | 0.5682 (6) | 0.6354 (5) | 0.068 (2) | |
H14 | 0.4451 | 0.5286 | 0.6333 | 0.081* | |
C15 | 0.4755 (3) | 0.6653 (6) | 0.6479 (6) | 0.082 (3) | |
H15 | 0.4384 | 0.6936 | 0.6560 | 0.098* | |
C16 | 0.5259 (3) | 0.7221 (6) | 0.6486 (5) | 0.068 (2) | |
H16 | 0.5236 | 0.7898 | 0.6569 | 0.082* | |
C17 | 0.5794 (3) | 0.6798 (5) | 0.6372 (4) | 0.0497 (16) | |
C18 | 0.6345 (3) | 0.7349 (5) | 0.6329 (4) | 0.0435 (14) | |
C19 | 0.6381 (3) | 0.8338 (5) | 0.6376 (4) | 0.0520 (16) | |
H19 | 0.6037 | 0.8706 | 0.6452 | 0.062* | |
C20 | 0.6913 (3) | 0.8800 (5) | 0.6313 (4) | 0.0558 (17) | |
H20 | 0.6939 | 0.9485 | 0.6336 | 0.067* | |
C21 | 0.7415 (3) | 0.8240 (5) | 0.6214 (4) | 0.0545 (17) | |
H21 | 0.7791 | 0.8536 | 0.6178 | 0.065* | |
C22 | 0.7353 (3) | 0.7249 (5) | 0.6170 (4) | 0.0437 (14) | |
H22 | 0.7692 | 0.6863 | 0.6104 | 0.052* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd | 0.0313 (2) | 0.0397 (2) | 0.0422 (3) | −0.00218 (17) | 0.00854 (15) | 0.00002 (19) |
P1 | 0.0333 (8) | 0.0718 (11) | 0.0553 (11) | 0.0101 (7) | 0.0084 (7) | 0.0075 (9) |
P2 | 0.0489 (10) | 0.0513 (9) | 0.0566 (11) | −0.0045 (7) | 0.0104 (7) | −0.0003 (8) |
F1 | 0.052 (5) | 0.120 (8) | 0.085 (7) | −0.023 (5) | 0.009 (4) | 0.023 (6) |
F2 | 0.135 (8) | 0.078 (6) | 0.133 (9) | 0.028 (6) | −0.024 (7) | −0.028 (6) |
F3 | 0.074 (6) | 0.141 (9) | 0.069 (6) | 0.002 (6) | 0.034 (5) | 0.002 (7) |
F4 | 0.096 (7) | 0.077 (6) | 0.076 (6) | −0.036 (5) | −0.006 (5) | −0.024 (5) |
F5 | 0.057 (6) | 0.116 (8) | 0.085 (7) | 0.031 (6) | −0.007 (5) | 0.019 (7) |
F6 | 0.041 (4) | 0.042 (4) | 0.069 (5) | 0.010 (3) | −0.005 (3) | 0.002 (4) |
F7 | 0.118 (8) | 0.082 (6) | 0.067 (6) | −0.025 (6) | 0.027 (6) | 0.011 (5) |
F8 | 0.078 (9) | 0.091 (8) | 0.078 (8) | 0.009 (7) | 0.023 (7) | −0.031 (6) |
F9 | 0.119 (8) | 0.039 (4) | 0.074 (6) | −0.011 (5) | 0.022 (6) | 0.000 (4) |
F10 | 0.044 (4) | 0.055 (5) | 0.057 (5) | 0.008 (4) | 0.000 (4) | −0.001 (4) |
F11 | 0.057 (5) | 0.100 (7) | 0.076 (6) | −0.001 (5) | −0.006 (4) | −0.021 (5) |
F12 | 0.048 (5) | 0.112 (7) | 0.098 (7) | 0.010 (5) | −0.003 (5) | −0.015 (6) |
F1' | 0.158 (10) | 0.174 (11) | 0.155 (10) | 0.065 (9) | 0.050 (8) | −0.009 (8) |
F2' | 0.122 (9) | 0.118 (8) | 0.115 (9) | −0.037 (7) | 0.016 (7) | 0.042 (7) |
F3' | 0.118 (7) | 0.084 (6) | 0.068 (6) | 0.025 (6) | 0.020 (5) | −0.010 (5) |
F4' | 0.122 (8) | 0.068 (6) | 0.096 (8) | −0.010 (6) | 0.008 (6) | 0.018 (6) |
F5' | 0.075 (6) | 0.104 (7) | 0.066 (6) | −0.011 (6) | 0.001 (5) | 0.001 (6) |
F6' | 0.098 (9) | 0.172 (11) | 0.134 (10) | −0.014 (9) | −0.002 (7) | 0.031 (9) |
F7' | 0.063 (7) | 0.063 (6) | 0.071 (7) | −0.003 (5) | 0.016 (6) | −0.014 (5) |
F8' | 0.045 (5) | 0.081 (6) | 0.075 (6) | −0.013 (4) | 0.019 (4) | −0.019 (5) |
F9' | 0.091 (7) | 0.097 (7) | 0.095 (7) | −0.034 (6) | 0.018 (6) | 0.012 (6) |
F10' | 0.118 (8) | 0.064 (5) | 0.063 (6) | −0.011 (7) | 0.012 (7) | −0.002 (5) |
F11' | 0.049 (5) | 0.109 (7) | 0.083 (6) | 0.015 (5) | 0.002 (4) | 0.028 (5) |
F12' | 0.101 (7) | 0.107 (7) | 0.073 (6) | 0.040 (6) | 0.001 (5) | 0.009 (6) |
O1 | 0.058 (3) | 0.043 (3) | 0.115 (5) | −0.003 (2) | 0.031 (3) | −0.020 (3) |
O2 | 0.049 (3) | 0.063 (3) | 0.106 (5) | 0.008 (2) | 0.002 (3) | −0.007 (3) |
N1 | 0.031 (2) | 0.051 (3) | 0.047 (3) | 0.002 (2) | 0.012 (2) | −0.004 (2) |
N2 | 0.158 (9) | 0.066 (5) | 0.101 (7) | −0.041 (5) | 0.058 (6) | −0.016 (4) |
N3 | 0.035 (2) | 0.038 (2) | 0.046 (3) | 0.0011 (19) | 0.011 (2) | 0.001 (2) |
N4 | 0.051 (4) | 0.109 (6) | 0.101 (6) | 0.006 (4) | 0.025 (4) | −0.022 (5) |
N5 | 0.037 (3) | 0.047 (3) | 0.053 (3) | −0.006 (2) | 0.002 (2) | −0.001 (2) |
N6 | 0.025 (2) | 0.050 (3) | 0.047 (3) | −0.0016 (19) | 0.0054 (19) | 0.000 (2) |
C1 | 0.077 (5) | 0.053 (4) | 0.052 (5) | −0.016 (4) | 0.018 (4) | −0.011 (3) |
C2 | 0.073 (5) | 0.048 (4) | 0.055 (5) | −0.013 (3) | 0.007 (3) | 0.001 (3) |
C3 | 0.037 (3) | 0.033 (3) | 0.066 (5) | 0.004 (2) | 0.007 (3) | −0.006 (3) |
C4 | 0.114 (8) | 0.058 (4) | 0.061 (6) | −0.015 (5) | 0.019 (5) | −0.023 (4) |
C5 | 0.099 (6) | 0.060 (4) | 0.049 (5) | −0.024 (4) | 0.022 (4) | −0.008 (3) |
C6 | 0.051 (4) | 0.048 (4) | 0.075 (5) | 0.004 (3) | 0.010 (3) | −0.009 (4) |
C7 | 0.045 (4) | 0.122 (7) | 0.047 (5) | 0.019 (4) | 0.013 (3) | −0.005 (4) |
C8 | 0.053 (4) | 0.123 (8) | 0.049 (5) | 0.027 (5) | 0.017 (3) | −0.008 (4) |
C9 | 0.038 (3) | 0.037 (3) | 0.066 (4) | −0.005 (2) | 0.009 (3) | −0.009 (3) |
C10 | 0.047 (5) | 0.170 (12) | 0.074 (6) | 0.026 (6) | 0.010 (4) | 0.037 (7) |
C11 | 0.047 (5) | 0.167 (11) | 0.059 (6) | 0.007 (5) | 0.018 (4) | 0.035 (6) |
C12 | 0.044 (4) | 0.042 (3) | 0.078 (5) | −0.001 (3) | 0.009 (3) | −0.010 (3) |
C13 | 0.036 (3) | 0.056 (4) | 0.075 (5) | −0.008 (3) | 0.001 (3) | 0.005 (3) |
C14 | 0.040 (4) | 0.066 (5) | 0.098 (7) | −0.006 (3) | 0.010 (4) | −0.004 (4) |
C15 | 0.039 (4) | 0.069 (5) | 0.139 (9) | 0.006 (4) | 0.020 (4) | −0.005 (5) |
C16 | 0.038 (4) | 0.059 (4) | 0.111 (7) | 0.007 (3) | 0.016 (4) | 0.000 (4) |
C17 | 0.032 (3) | 0.058 (4) | 0.060 (4) | −0.004 (3) | 0.009 (3) | 0.006 (3) |
C18 | 0.033 (3) | 0.047 (3) | 0.051 (4) | −0.003 (2) | 0.006 (2) | −0.002 (3) |
C19 | 0.041 (3) | 0.042 (3) | 0.073 (5) | 0.003 (3) | 0.004 (3) | −0.008 (3) |
C20 | 0.050 (4) | 0.042 (3) | 0.075 (5) | −0.003 (3) | 0.004 (3) | −0.005 (3) |
C21 | 0.043 (4) | 0.049 (4) | 0.071 (5) | −0.010 (3) | 0.005 (3) | −0.003 (3) |
C22 | 0.034 (3) | 0.045 (3) | 0.052 (4) | 0.000 (2) | 0.003 (2) | 0.002 (3) |
Pd—N1 | 2.005 (5) | N5—C17 | 1.332 (9) |
Pd—N3 | 2.024 (5) | N5—C13 | 1.357 (8) |
Pd—N5 | 2.013 (5) | N6—C22 | 1.343 (7) |
Pd—N6 | 2.014 (5) | N6—C18 | 1.346 (8) |
P1—F3 | 1.501 (11) | C1—C2 | 1.351 (10) |
P1—F2' | 1.514 (13) | C1—H1 | 0.9500 |
P1—F1' | 1.538 (16) | C2—C3 | 1.374 (10) |
P1—F5 | 1.561 (11) | C2—H2 | 0.9500 |
P1—F6' | 1.562 (19) | C3—C4 | 1.365 (11) |
P1—F6 | 1.577 (9) | C3—C6 | 1.501 (9) |
P1—F5' | 1.580 (13) | C4—C5 | 1.362 (11) |
P1—F2 | 1.593 (13) | C4—H4 | 0.9500 |
P1—F3' | 1.596 (10) | C5—H5 | 0.9500 |
P1—F1 | 1.599 (11) | C7—C8 | 1.391 (10) |
P1—F4 | 1.602 (10) | C7—H7 | 0.9500 |
P1—F4' | 1.646 (12) | C8—C9 | 1.340 (11) |
P2—F12' | 1.494 (11) | C8—H8 | 0.9500 |
P2—F12 | 1.500 (10) | C9—C10 | 1.339 (12) |
P2—F8 | 1.522 (19) | C9—C12 | 1.504 (9) |
P2—F8' | 1.542 (11) | C10—C11 | 1.376 (12) |
P2—F10' | 1.580 (13) | C10—H10 | 0.9500 |
P2—F7 | 1.583 (10) | C11—H11 | 0.9500 |
P2—F9 | 1.587 (11) | C13—C14 | 1.373 (10) |
P2—F9' | 1.626 (11) | C13—H13 | 0.9500 |
P2—F7' | 1.639 (19) | C14—C15 | 1.366 (12) |
P2—F11' | 1.642 (10) | C14—H14 | 0.9500 |
P2—F10 | 1.650 (11) | C15—C16 | 1.382 (11) |
P2—F11 | 1.667 (10) | C15—H15 | 0.9500 |
O1—C6 | 1.189 (9) | C16—C17 | 1.374 (9) |
O2—C12 | 1.266 (10) | C16—H16 | 0.9500 |
N1—C5 | 1.325 (9) | C17—C18 | 1.467 (8) |
N1—C1 | 1.345 (9) | C18—C19 | 1.372 (9) |
N2—C6 | 1.376 (11) | C19—C20 | 1.375 (9) |
N2—H1n | 0.8800 | C19—H19 | 0.9500 |
N2—H2n | 0.8800 | C20—C21 | 1.398 (10) |
N3—C7 | 1.303 (9) | C20—H20 | 0.9500 |
N3—C11 | 1.329 (10) | C21—C22 | 1.380 (9) |
N4—C12 | 1.282 (10) | C21—H21 | 0.9500 |
N4—H3n | 0.8800 | C22—H22 | 0.9500 |
N4—H4n | 0.8800 | ||
N1—Pd—N5 | 94.3 (2) | C11—N3—Pd | 120.4 (5) |
N1—Pd—N6 | 174.40 (19) | C12—N4—H3n | 120.0 |
N5—Pd—N6 | 81.2 (2) | C12—N4—H4n | 120.0 |
N1—Pd—N3 | 88.8 (2) | H3n—N4—H4n | 120.0 |
N5—Pd—N3 | 176.8 (2) | C17—N5—C13 | 120.2 (6) |
N6—Pd—N3 | 95.66 (19) | C17—N5—Pd | 113.6 (4) |
F2'—P1—F1' | 90.4 (10) | C13—N5—Pd | 126.2 (5) |
F3—P1—F5 | 92.6 (8) | C22—N6—C18 | 119.8 (6) |
F3—P1—F6' | 90.7 (9) | C22—N6—Pd | 126.4 (4) |
F2'—P1—F6' | 93.6 (10) | C18—N6—Pd | 113.7 (4) |
F1'—P1—F6' | 91.1 (11) | N1—C1—C2 | 121.9 (7) |
F5—P1—F6' | 156.2 (10) | N1—C1—H1 | 119.0 |
F3—P1—F6 | 92.5 (7) | C2—C1—H1 | 119.0 |
F5—P1—F6 | 174.9 (7) | C1—C2—C3 | 121.1 (7) |
F2'—P1—F5' | 93.9 (8) | C1—C2—H2 | 119.4 |
F1'—P1—F5' | 88.8 (10) | C3—C2—H2 | 119.4 |
F6'—P1—F5' | 172.5 (9) | C4—C3—C2 | 116.1 (6) |
F3—P1—F2 | 92.3 (9) | C4—C3—C6 | 121.7 (7) |
F5—P1—F2 | 93.9 (8) | C2—C3—C6 | 122.2 (7) |
F6—P1—F2 | 86.6 (6) | C5—C4—C3 | 121.0 (7) |
F2'—P1—F3' | 90.8 (9) | C5—C4—H4 | 119.5 |
F1'—P1—F3' | 177.4 (11) | C3—C4—H4 | 119.5 |
F6'—P1—F3' | 91.1 (9) | N1—C5—C4 | 122.3 (8) |
F5'—P1—F3' | 88.9 (7) | N1—C5—H5 | 118.9 |
F3—P1—F1 | 179.9 (10) | C4—C5—H5 | 118.9 |
F5—P1—F1 | 87.4 (7) | O1—C6—N2 | 118.3 (7) |
F6—P1—F1 | 87.6 (6) | O1—C6—C3 | 124.2 (7) |
F2—P1—F1 | 87.7 (8) | N2—C6—C3 | 117.4 (7) |
F3—P1—F4 | 93.5 (8) | N3—C7—C8 | 122.3 (8) |
F5—P1—F4 | 91.3 (7) | N3—C7—H7 | 118.9 |
F6—P1—F4 | 87.8 (6) | C8—C7—H7 | 118.9 |
F2—P1—F4 | 172.1 (8) | C9—C8—C7 | 119.8 (7) |
F1—P1—F4 | 86.6 (7) | C9—C8—H8 | 120.1 |
F2'—P1—F4' | 173.2 (9) | C7—C8—H8 | 120.1 |
F1'—P1—F4' | 96.4 (11) | C10—C9—C8 | 118.1 (7) |
F6'—P1—F4' | 86.3 (9) | C10—C9—C12 | 117.8 (7) |
F5'—P1—F4' | 86.3 (7) | C8—C9—C12 | 124.1 (7) |
F3'—P1—F4' | 82.4 (7) | C9—C10—C11 | 120.1 (8) |
F12—P2—F8 | 93.7 (8) | C9—C10—H10 | 120.0 |
F12'—P2—F8' | 94.8 (8) | C11—C10—H10 | 120.0 |
F12'—P2—F10' | 92.7 (7) | N3—C11—C10 | 122.1 (8) |
F8'—P2—F10' | 91.3 (6) | N3—C11—H11 | 119.0 |
F12—P2—F7 | 91.1 (7) | C10—C11—H11 | 119.0 |
F8—P2—F7 | 92.2 (10) | O2—C12—N4 | 119.1 (8) |
F12—P2—F9 | 94.7 (7) | O2—C12—C9 | 119.7 (7) |
F8—P2—F9 | 91.4 (9) | N4—C12—C9 | 121.1 (8) |
F10'—P2—F9 | 93.9 (6) | N5—C13—C14 | 120.8 (7) |
F7—P2—F9 | 172.9 (8) | N5—C13—H13 | 119.6 |
F12'—P2—F9' | 91.1 (8) | C14—C13—H13 | 119.6 |
F8'—P2—F9' | 174.1 (7) | C15—C14—C13 | 119.2 (7) |
F10'—P2—F9' | 89.1 (7) | C15—C14—H14 | 120.4 |
F12'—P2—F7' | 90.6 (8) | C13—C14—H14 | 120.4 |
F8'—P2—F7' | 91.2 (7) | C14—C15—C16 | 119.5 (7) |
F10'—P2—F7' | 175.7 (8) | C14—C15—H15 | 120.2 |
F9'—P2—F7' | 88.0 (7) | C16—C15—H15 | 120.2 |
F12'—P2—F11' | 177.2 (7) | C17—C16—C15 | 119.4 (8) |
F8'—P2—F11' | 88.1 (6) | C17—C16—H16 | 120.3 |
F10'—P2—F11' | 87.4 (7) | C15—C16—H16 | 120.3 |
F9'—P2—F11' | 86.0 (6) | N5—C17—C16 | 120.8 (6) |
F7'—P2—F11' | 89.2 (8) | N5—C17—C18 | 116.0 (6) |
F12—P2—F10 | 88.8 (5) | C16—C17—C18 | 123.2 (7) |
F8—P2—F10 | 177.5 (7) | N6—C18—C19 | 120.8 (6) |
F7—P2—F10 | 88.1 (6) | N6—C18—C17 | 115.1 (6) |
F9—P2—F10 | 88.0 (6) | C19—C18—C17 | 124.1 (6) |
F12—P2—F11 | 174.5 (6) | C18—C19—C20 | 120.4 (6) |
F8—P2—F11 | 91.8 (7) | C18—C19—H19 | 119.8 |
F7—P2—F11 | 88.1 (7) | C20—C19—H19 | 119.8 |
F9—P2—F11 | 85.7 (7) | C19—C20—C21 | 118.6 (6) |
F10—P2—F11 | 85.8 (5) | C19—C20—H20 | 120.7 |
C5—N1—C1 | 117.5 (6) | C21—C20—H20 | 120.7 |
C5—N1—Pd | 124.3 (5) | C22—C21—C20 | 118.6 (6) |
C1—N1—Pd | 118.2 (4) | C22—C21—H21 | 120.7 |
C6—N2—H1n | 120.0 | C20—C21—H21 | 120.7 |
C6—N2—H2n | 120.0 | N6—C22—C21 | 121.8 (6) |
H1n—N2—H2n | 120.0 | N6—C22—H22 | 119.1 |
C7—N3—C11 | 117.4 (6) | C21—C22—H22 | 119.1 |
C7—N3—Pd | 122.2 (5) | ||
N5—Pd—N1—C5 | 99.2 (6) | C8—C9—C10—C11 | −2.9 (16) |
N3—Pd—N1—C5 | −81.7 (6) | C12—C9—C10—C11 | 176.3 (10) |
N5—Pd—N1—C1 | −77.7 (5) | C7—N3—C11—C10 | 4.4 (16) |
N3—Pd—N1—C1 | 101.4 (5) | Pd—N3—C11—C10 | −175.3 (9) |
N1—Pd—N3—C7 | 103.1 (7) | C9—C10—C11—N3 | −0.2 (19) |
N6—Pd—N3—C7 | −80.3 (7) | C10—C9—C12—O2 | −7.7 (11) |
N1—Pd—N3—C11 | −77.2 (7) | C8—C9—C12—O2 | 171.5 (8) |
N6—Pd—N3—C11 | 99.4 (7) | C10—C9—C12—N4 | 169.4 (9) |
N1—Pd—N5—C17 | 170.8 (5) | C8—C9—C12—N4 | −11.5 (12) |
N6—Pd—N5—C17 | −5.9 (5) | C17—N5—C13—C14 | −1.6 (12) |
N1—Pd—N5—C13 | −7.8 (6) | Pd—N5—C13—C14 | 176.9 (6) |
N6—Pd—N5—C13 | 175.6 (6) | N5—C13—C14—C15 | −0.9 (14) |
N5—Pd—N6—C22 | −178.6 (6) | C13—C14—C15—C16 | 1.8 (16) |
N3—Pd—N6—C22 | 2.1 (6) | C14—C15—C16—C17 | −0.4 (15) |
N5—Pd—N6—C18 | 4.9 (5) | C13—N5—C17—C16 | 3.0 (11) |
N3—Pd—N6—C18 | −174.4 (5) | Pd—N5—C17—C16 | −175.6 (6) |
C5—N1—C1—C2 | −0.3 (12) | C13—N5—C17—C18 | −175.6 (6) |
Pd—N1—C1—C2 | 176.9 (6) | Pd—N5—C17—C18 | 5.8 (8) |
N1—C1—C2—C3 | −2.4 (13) | C15—C16—C17—N5 | −2.0 (13) |
C1—C2—C3—C4 | 3.0 (12) | C15—C16—C17—C18 | 176.5 (8) |
C1—C2—C3—C6 | −175.9 (7) | C22—N6—C18—C19 | 1.5 (10) |
C2—C3—C4—C5 | −1.2 (13) | Pd—N6—C18—C19 | 178.2 (5) |
C6—C3—C4—C5 | 177.7 (8) | C22—N6—C18—C17 | −180.0 (6) |
C1—N1—C5—C4 | 2.1 (13) | Pd—N6—C18—C17 | −3.3 (7) |
Pd—N1—C5—C4 | −174.8 (8) | N5—C17—C18—N6 | −1.7 (9) |
C3—C4—C5—N1 | −1.4 (16) | C16—C17—C18—N6 | 179.7 (7) |
C4—C3—C6—O1 | 15.2 (12) | N5—C17—C18—C19 | 176.7 (7) |
C2—C3—C6—O1 | −166.0 (8) | C16—C17—C18—C19 | −1.8 (12) |
C4—C3—C6—N2 | −162.3 (9) | N6—C18—C19—C20 | −0.2 (11) |
C2—C3—C6—N2 | 16.6 (11) | C17—C18—C19—C20 | −178.6 (7) |
C11—N3—C7—C8 | −5.4 (14) | C18—C19—C20—C21 | −1.1 (12) |
Pd—N3—C7—C8 | 174.2 (8) | C19—C20—C21—C22 | 1.1 (12) |
N3—C7—C8—C9 | 2.4 (16) | C18—N6—C22—C21 | −1.5 (10) |
C7—C8—C9—C10 | 2.0 (14) | Pd—N6—C22—C21 | −177.7 (5) |
C7—C8—C9—C12 | −177.2 (8) | C20—C21—C22—N6 | 0.1 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N···O2i | 0.88 | 2.29 | 3.031 (11) | 142 |
N2—H1N···O2ii | 0.88 | 2.37 | 3.032 (11) | 132 |
N2—H2N···F9iii | 0.88 | 2.24 | 3.037 (15) | 151 |
N2—H2N···F11′iii | 0.88 | 2.38 | 3.220 (14) | 159 |
N4—H3N···F7′iv | 0.88 | 2.52 | 3.175 (19) | 132 |
N4—H3N···F8iv | 0.88 | 2.55 | 3.10 (2) | 121 |
N4—H4N···O1v | 0.88 | 1.97 | 2.836 (11) | 168 |
Symmetry codes: (i) x−1/2, y−1/2, z; (ii) −x+3/2, y−1/2, −z+3/2; (iii) x, −y+1, z+1/2; (iv) x+1/2, y−1/2, z; (v) −x+3/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Pd(C10H8N2)(C6H6NO2)2](PF6)2 |
Mr | 796.78 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 22.5920 (14), 13.8299 (8), 17.9092 (12) |
β (°) | 95.269 (8) |
V (Å3) | 5572.0 (6) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 7.55 |
Crystal size (mm) | 0.46 × 0.16 × 0.15 |
Data collection | |
Diffractometer | Bruker APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.126, 0.401 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30116, 5182, 3944 |
Rint | 0.072 |
(sin θ/λ)max (Å−1) | 0.609 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.147, 1.01 |
No. of reflections | 5182 |
No. of parameters | 520 |
No. of restraints | 144 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.67, −0.78 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N···O2i | 0.88 | 2.29 | 3.031 (11) | 142 |
N2—H1N···O2ii | 0.88 | 2.37 | 3.032 (11) | 132 |
N2—H2N···F9iii | 0.88 | 2.24 | 3.037 (15) | 151 |
N2—H2N···F11'iii | 0.88 | 2.38 | 3.220 (14) | 159 |
N4—H3N···F7'iv | 0.88 | 2.52 | 3.175 (19) | 132 |
N4—H3N···F8iv | 0.88 | 2.55 | 3.10 (2) | 121 |
N4—H4N···O1v | 0.88 | 1.97 | 2.836 (11) | 168 |
Symmetry codes: (i) x−1/2, y−1/2, z; (ii) −x+3/2, y−1/2, −z+3/2; (iii) x, −y+1, z+1/2; (iv) x+1/2, y−1/2, z; (v) −x+3/2, −y+1/2, −z+1. |
Footnotes
‡Additional correspondence author, e-mail: adrian@uiwtx.edu.
Acknowledgements
The authors appreciate the support of the Chemistry Department at the University of the Incarnate Word. The authors thank the National Science Foundation (grant CHE-0130835) and the University of Oklahoma for funds to purchase the X-ray instrument and computers. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR-MOHE/SC/12).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Carboxamides have been used for the synthesis of supramolecular structures due to their ability to hydrogen bond as shown by Sun et al. (2011) and Moncol et al. (2007). With that in mind we sought to crystallize palladium(II) complexes with 4-pyridinecarboxamide ligands, similar to those created by Galstyan et al., (2011), Fujimura et al. (2004) and Qin et al. (2001). The title compound can be synthesized by the reaction of the 2,2'-bipyridine palladium(II) metal centre with the 4-pyridinecarboxamide ligand or by the palladium-catalyzed hydration of the 2,2'-bipyridine palladium(II) 4-cyanopyridine analog complex in a similar reaction to the one reported by Sanchez et al. (2000).
The complex cation of the title compound, Fig. 1, features a square planar palladium(II) centre with a cis disposition of the N-bound 4-pyridinecarboxamide ligands. No systematic trends are evident in the Pd—N bond lengths (Table 1). The 4-pyridinecarboxamide ligands are almost orthogonal to each other, the dihedral angle being 85.7 (5)°, and to the PdN4 plane with dihedral angles of 79.3 (3) [N1-ligand] and 78.7 (3)°; a similar situation was found in the BF4- analogue (Qin et al., 2001). Each of the amide groups lies out of the plane of the pyridyl ring to which it is connected as seen in the C2—C3—C6—O1 and C8—C9—C12—O2 torsion angles of -166.0 (8) and 171.5 (8)°, respectively. The 2,2'-bipyridine ring is almost planar the dihedral angle between the pyridyl rings being 4.7 (4)°. The amide-O atoms lie to opposite sides of the PdN4 plane.
A detailed analysis of the crystal packing is not possible owing to the disorder in the two PF6- anions. However, the most notable feature of the crystal packing is a supramolecular chain orientated approximately along [3 1 0] arising from centrosymmetric 16-membered {···HNCO}4 synthons constructed by four interacting amide groups (Fig. 2 and Table 2). A three-dimensional architecture arises from additional amide-H···O, F interactions (Table 2).