organic compounds
1,4-Dihydrobenzo[g]quinoxaline-2,3-dione
aDepartment of Pharmaceutical Sciences, Faculty of Medicine and Pharmaceutical Sciences, University of Douala, BP 2701, Cameroon, and bTechnische Universität Chemnitz, Fakultät für Naturwissenschaften, Institut für Chemie, Lehrstuhl für Anorganische Chemie, Strasse der Nationen 62, 09111 Chemnitz, Germany
*Correspondence e-mail: francois.eya@chemie.tu-chemnitz.de
The title compound, C12H8N2O2, was prepared by the reaction of the diethyl ester of naphthalenebis(oxamate) with tert-BuNH2. The molecule is nearly planar, with an r.m.s. deviation of 0.017 Å from the plane through all 16 non-H atoms. In the crystal, a three-dimensional network is formed, composed of layers of molecules along the b- and c-axis directions, due to the formation of intermolecular N—H⋯O hydrogen bonds, as well as of chains along the a-axis direction due to parallel displaced sandwich-type π–π interactions with average distances between the interacting molecules in the range 3.35–3.40 Å.
Related literature
For the synthesis and structure of 1,4-dihydrobenzo[g]quinoxaline-2,3-dione·3H2O, see: Oxtoby et al. (2005). For the use of bis(oxamates) and bis(oxamidates) for complex formation, see: Pardo et al. (2008) and Abdulmalic et al. (2012); Rüffer et al. (2012), respectively. For the general synthesis of bis(oxamidates), see: Ruiz et al. (1997) and for the synthesis of diethyl N,N'-naphtalene-bis(oxamate), see: Rüffer et al. (2007). For thin film formation by bis(oxamato) complexes, see: Eya'ane Meva (2009); Bräuer et al. (2006). For self-organization in supramolecular chemistry due to intermolecular π interactions and/or hydrogen bonds, see: Burrow et al. (1996); Chowdhry et al. (1996); Dai et al. (1997); Munoz et al. (1998). For dione in the solid state, see: Svenson (1976).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012) and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812047526/sj5284sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812047526/sj5284Isup3.hkl
Supporting information file. DOI: 10.1107/S1600536812047526/sj5284Isup3.cml
Diethyl N,N'-naphthalene-bis(oxamate) was synthesized according to the literature (Rüffer et al., 2007). To a solution of diethyl naphthalene-bis(oxamate) (1.5 g, 9.49 mmol) in MeOH (50 ml) three equivalents of a solution of tert-BuNH2 (2.05 g, 28.47 mmol) in MeOH (25 ml) were added. The solution was refluxed for 30 minutes, cooled to room temperature and concentrated to 30 ml. Diethyl ether (100 ml) was added and the resulting brown precipitate was filtered and dried on air. Yellow crystals of 1 were obtained by solvent diffusion of a dilute MeOH solution of 1 against Et2O at room temperature. Yield: 0.7 g, 80%.
C-bonded H atoms were placed in calculated positions and constrained to ride on their parent atoms, with a C—H distance of 0.93 Å and Uiso(H) = 1.2Ueq(C). The N-bonded H atoms were located on a difference Fourier map and refined freely. The high
low ratio of observed to unique reflections and relatively high su values indicate that the crystals were not of good quality and were very weakly diffracting.Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell
CrysAlis CCD (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012) and publCIF (Westrip, 2010).C12H8N2O2 | F(000) = 440 |
Mr = 212.20 | Dx = 1.557 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 5135 reflections |
a = 7.1334 (15) Å | θ = 2.9–25.9° |
b = 8.4229 (18) Å | µ = 0.11 mm−1 |
c = 15.292 (2) Å | T = 293 K |
β = 99.792 (14)° | Block, yellow |
V = 905.4 (3) Å3 | 0.3 × 0.2 × 0.1 mm |
Z = 4 |
Oxford Gemini S diffractometer | 875 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.039 |
Graphite monochromator | θmax = 26.0°, θmin = 3.0° |
ω scans | h = −8→7 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006) | k = −10→8 |
Tmin = 0.649, Tmax = 1.000 | l = −18→18 |
5294 measured reflections | 2 standard reflections every 50 reflections |
1773 independent reflections | intensity decay: none |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.094 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.271 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.92 | w = 1/[σ2(Fo2) + (0.2P)2] where P = (Fo2 + 2Fc2)/3 |
1773 reflections | (Δ/σ)max = 0.001 |
153 parameters | Δρmax = 0.77 e Å−3 |
0 restraints | Δρmin = −0.57 e Å−3 |
C12H8N2O2 | V = 905.4 (3) Å3 |
Mr = 212.20 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 7.1334 (15) Å | µ = 0.11 mm−1 |
b = 8.4229 (18) Å | T = 293 K |
c = 15.292 (2) Å | 0.3 × 0.2 × 0.1 mm |
β = 99.792 (14)° |
Oxford Gemini S diffractometer | 875 reflections with I > 2σ(I) |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006) | Rint = 0.039 |
Tmin = 0.649, Tmax = 1.000 | 2 standard reflections every 50 reflections |
5294 measured reflections | intensity decay: none |
1773 independent reflections |
R[F2 > 2σ(F2)] = 0.094 | 0 restraints |
wR(F2) = 0.271 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.92 | Δρmax = 0.77 e Å−3 |
1773 reflections | Δρmin = −0.57 e Å−3 |
153 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2609 (4) | −0.2869 (4) | 1.1809 (2) | 0.0276 (8) | |
C2 | 0.1631 (4) | −0.3842 (4) | 1.1026 (2) | 0.0276 (8) | |
C3 | 0.2764 (4) | −0.0662 (4) | 1.07897 (19) | 0.0257 (8) | |
C4 | 0.1859 (4) | −0.1580 (3) | 1.0060 (2) | 0.0247 (8) | |
C5 | 0.3312 (4) | 0.0874 (4) | 1.06546 (19) | 0.0246 (8) | |
H5 | 0.3908 | 0.1472 | 1.1134 | 0.030* | |
C6 | 0.1489 (4) | −0.0948 (4) | 0.92275 (19) | 0.0245 (8) | |
H6 | 0.0876 | −0.1557 | 0.8757 | 0.029* | |
C7 | 0.2984 (4) | 0.1545 (4) | 0.9806 (2) | 0.0253 (8) | |
C8 | 0.2032 (4) | 0.0626 (4) | 0.9075 (2) | 0.0262 (8) | |
C9 | 0.3508 (4) | 0.3129 (4) | 0.9647 (2) | 0.0272 (8) | |
H9 | 0.4124 | 0.3738 | 1.0116 | 0.033* | |
C10 | 0.1628 (4) | 0.1342 (4) | 0.8220 (2) | 0.0284 (8) | |
H10 | 0.0984 | 0.0763 | 0.7743 | 0.034* | |
C11 | 0.3125 (5) | 0.3775 (4) | 0.8816 (2) | 0.0327 (8) | |
H11 | 0.3488 | 0.4815 | 0.8726 | 0.039* | |
C12 | 0.2174 (5) | 0.2868 (4) | 0.8089 (2) | 0.0327 (9) | |
H12 | 0.1924 | 0.3313 | 0.7525 | 0.039* | |
N1 | 0.3053 (4) | −0.1348 (3) | 1.16349 (17) | 0.0273 (7) | |
N2 | 0.1300 (4) | −0.3136 (3) | 1.02231 (17) | 0.0260 (7) | |
O1 | 0.2918 (3) | −0.3464 (3) | 1.25533 (14) | 0.0361 (7) | |
O2 | 0.1113 (3) | −0.5216 (3) | 1.11523 (14) | 0.0344 (7) | |
H1N | 0.354 (5) | −0.073 (5) | 1.211 (2) | 0.043 (10)* | |
H2N | 0.053 (6) | −0.366 (5) | 0.975 (3) | 0.059 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0346 (19) | 0.0156 (17) | 0.0319 (17) | 0.0018 (13) | 0.0036 (13) | −0.0041 (13) |
C2 | 0.0318 (18) | 0.0181 (17) | 0.0319 (16) | 0.0028 (13) | 0.0028 (13) | 0.0005 (13) |
C3 | 0.0279 (18) | 0.0199 (18) | 0.0290 (16) | 0.0010 (12) | 0.0041 (12) | −0.0026 (13) |
C4 | 0.0258 (18) | 0.0128 (16) | 0.0358 (17) | 0.0013 (12) | 0.0055 (13) | −0.0030 (12) |
C5 | 0.0273 (17) | 0.0139 (16) | 0.0316 (16) | 0.0028 (12) | 0.0023 (12) | −0.0012 (12) |
C6 | 0.0265 (17) | 0.0172 (17) | 0.0289 (15) | 0.0001 (12) | 0.0019 (12) | −0.0036 (12) |
C7 | 0.0279 (18) | 0.0137 (17) | 0.0345 (16) | 0.0027 (12) | 0.0056 (13) | −0.0020 (13) |
C8 | 0.0307 (18) | 0.0146 (17) | 0.0347 (17) | 0.0018 (12) | 0.0099 (13) | 0.0023 (13) |
C9 | 0.0272 (18) | 0.0195 (18) | 0.0347 (17) | −0.0006 (13) | 0.0044 (13) | −0.0005 (13) |
C10 | 0.0333 (19) | 0.0197 (18) | 0.0322 (16) | −0.0007 (13) | 0.0052 (13) | −0.0029 (13) |
C11 | 0.042 (2) | 0.0199 (18) | 0.0370 (18) | −0.0007 (14) | 0.0081 (14) | 0.0021 (13) |
C12 | 0.044 (2) | 0.0243 (19) | 0.0300 (16) | 0.0043 (14) | 0.0064 (14) | 0.0065 (13) |
N1 | 0.0394 (17) | 0.0154 (15) | 0.0257 (14) | −0.0026 (11) | 0.0013 (11) | −0.0027 (10) |
N2 | 0.0342 (16) | 0.0130 (14) | 0.0297 (14) | −0.0001 (10) | 0.0021 (11) | −0.0018 (10) |
O1 | 0.0532 (16) | 0.0191 (14) | 0.0330 (13) | −0.0021 (10) | −0.0007 (10) | 0.0033 (9) |
O2 | 0.0459 (15) | 0.0148 (13) | 0.0400 (14) | −0.0017 (9) | 0.0005 (10) | 0.0008 (9) |
C1—O1 | 1.230 (4) | C6—H6 | 0.9300 |
C1—N1 | 1.356 (4) | C7—C9 | 1.417 (4) |
C1—C2 | 1.518 (4) | C7—C8 | 1.432 (4) |
C2—O2 | 1.240 (4) | C8—C10 | 1.425 (4) |
C2—N2 | 1.349 (4) | C9—C11 | 1.366 (4) |
C3—C5 | 1.378 (4) | C9—H9 | 0.9300 |
C3—N1 | 1.399 (4) | C10—C12 | 1.367 (4) |
C3—C4 | 1.420 (4) | C10—H10 | 0.9300 |
C4—C6 | 1.364 (4) | C11—C12 | 1.423 (5) |
C4—N2 | 1.404 (4) | C11—H11 | 0.9300 |
C5—C7 | 1.398 (4) | C12—H12 | 0.9300 |
C5—H5 | 0.9300 | N1—H1N | 0.91 (4) |
C6—C8 | 1.412 (4) | N2—H2N | 0.94 (4) |
O1—C1—N1 | 123.8 (3) | C6—C8—C10 | 122.0 (3) |
O1—C1—C2 | 119.7 (3) | C6—C8—C7 | 119.1 (3) |
N1—C1—C2 | 116.5 (3) | C10—C8—C7 | 118.9 (3) |
O2—C2—N2 | 122.8 (3) | C11—C9—C7 | 121.2 (3) |
O2—C2—C1 | 119.4 (3) | C11—C9—H9 | 119.4 |
N2—C2—C1 | 117.7 (3) | C7—C9—H9 | 119.4 |
C5—C3—N1 | 121.7 (3) | C12—C10—C8 | 120.9 (3) |
C5—C3—C4 | 119.8 (3) | C12—C10—H10 | 119.6 |
N1—C3—C4 | 118.5 (3) | C8—C10—H10 | 119.6 |
C6—C4—N2 | 121.0 (3) | C9—C11—C12 | 120.4 (3) |
C6—C4—C3 | 120.7 (3) | C9—C11—H11 | 119.8 |
N2—C4—C3 | 118.3 (3) | C12—C11—H11 | 119.8 |
C3—C5—C7 | 120.8 (3) | C10—C12—C11 | 120.1 (3) |
C3—C5—H5 | 119.6 | C10—C12—H12 | 120.0 |
C7—C5—H5 | 119.6 | C11—C12—H12 | 120.0 |
C4—C6—C8 | 120.4 (3) | C1—N1—C3 | 124.6 (3) |
C4—C6—H6 | 119.8 | C1—N1—H1N | 117 (2) |
C8—C6—H6 | 119.8 | C3—N1—H1N | 118 (2) |
C5—C7—C9 | 122.2 (3) | C2—N2—C4 | 124.2 (3) |
C5—C7—C8 | 119.2 (3) | C2—N2—H2N | 119 (3) |
C9—C7—C8 | 118.6 (3) | C4—N2—H2N | 117 (3) |
O1—C1—C2—O2 | 1.7 (5) | C5—C7—C8—C10 | 177.3 (3) |
N1—C1—C2—O2 | −176.8 (3) | C9—C7—C8—C10 | −0.8 (4) |
O1—C1—C2—N2 | 179.3 (3) | C5—C7—C9—C11 | −178.1 (3) |
N1—C1—C2—N2 | 0.8 (4) | C8—C7—C9—C11 | −0.1 (5) |
C5—C3—C4—C6 | −1.3 (5) | C6—C8—C10—C12 | −179.8 (3) |
N1—C3—C4—C6 | 177.9 (3) | C7—C8—C10—C12 | 1.5 (5) |
C5—C3—C4—N2 | −179.3 (3) | C7—C9—C11—C12 | 0.4 (5) |
N1—C3—C4—N2 | −0.1 (4) | C8—C10—C12—C11 | −1.3 (5) |
N1—C3—C5—C7 | −179.0 (3) | C9—C11—C12—C10 | 0.4 (5) |
C4—C3—C5—C7 | 0.2 (5) | O1—C1—N1—C3 | 178.1 (3) |
N2—C4—C6—C8 | 179.0 (2) | C2—C1—N1—C3 | −3.5 (4) |
C3—C4—C6—C8 | 1.1 (5) | C5—C3—N1—C1 | −177.6 (3) |
C3—C5—C7—C9 | 179.2 (3) | C4—C3—N1—C1 | 3.2 (5) |
C3—C5—C7—C8 | 1.2 (5) | O2—C2—N2—C4 | 179.7 (3) |
C4—C6—C8—C10 | −178.4 (3) | C1—C2—N2—C4 | 2.2 (4) |
C4—C6—C8—C7 | 0.3 (5) | C6—C4—N2—C2 | 179.5 (3) |
C5—C7—C8—C6 | −1.4 (4) | C3—C4—N2—C2 | −2.6 (5) |
C9—C7—C8—C6 | −179.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.91 (4) | 2.27 (4) | 2.866 (3) | 122 (3) |
N2—H2N···O2ii | 0.94 (4) | 1.90 (4) | 2.843 (4) | 176 (4) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+5/2; (ii) −x, −y−1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C12H8N2O2 |
Mr | 212.20 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 7.1334 (15), 8.4229 (18), 15.292 (2) |
β (°) | 99.792 (14) |
V (Å3) | 905.4 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.3 × 0.2 × 0.1 |
Data collection | |
Diffractometer | Oxford Gemini S diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2006) |
Tmin, Tmax | 0.649, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5294, 1773, 875 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.094, 0.271, 0.92 |
No. of reflections | 1773 |
No. of parameters | 153 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.77, −0.57 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), WinGX (Farrugia, 2012) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.91 (4) | 2.27 (4) | 2.866 (3) | 122 (3) |
N2—H2N···O2ii | 0.94 (4) | 1.90 (4) | 2.843 (4) | 176 (4) |
Symmetry codes: (i) −x+1/2, y+1/2, −z+5/2; (ii) −x, −y−1, −z+2. |
Acknowledgements
FEM and MAA are grateful to the DAAD for PhD research fellowships and the DFG research unit "Towards Molecular Spintronics" FOR 1154 for providing fellowships. The authors express sincere thanks to the CIM, WUS, and the Faculty of Medicine and Pharmaceutical Sciences of the University of Douala for financial support.
References
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Weak interactions such as intermolecular π interactions or the formation of hydrogen bonds are essential for molecular recognition and self organization in biological systems and supramolecular chemistry (Burrow et al., 1996; Chowdhry et al., 1996; Dai et al., 1997). Oxtoby et al. (2005) synthesized derivatives of dihydroquinoxalinedione containing a hydrophilic oxalamide-based "terminus". This oxalamide serves to increase the water solubility of the organic molecules and allows H2O molecules to be hydrogen bonded to the organic molecules as well as to each other. In this perspective, 1,4 dihydrobenzo[g]quinoxaline-2,3-dione hydrate (1×3H2O) has been crystallized by slowly cooling a boiling solution of the powder in DMF/water to room temperature (Oxtoby et al., 2005). Infinite arrays containing two different alternating head-to-tail π interactions parallel to the crystallographic a axis were observed in the solid state of 1×3H2O, with the π stacks being orthogonal to chains of H2O molecules and held together by R22(8) hydrogen-bonding interactions.
Bis(oxamate) molecules (type I molecules, cf. Figure 4) have been widely used in order to produce a series of complexes with various magnetic interactions (Pardo et al., 2008). In previous work, our interest was devoted to a study of the impact of π interactions in the formation of thin films using trimetallic bis(oxamato) type complexes (Eya'ane Meva, 2009; Bräuer et al., 2006) as well as the investigation of electronic effects on magnetic J couplings (Rüffer et al., 2007). With the aim of using type I—NR2 molecules as ligands for the formation of transition metal complexes (Abdulmalic et al., 2012; Rüffer et al., 2012), we became interested in their synthesis. Generally, type I molecules are reacted with an excess of a primary amine (Ruiz et al., 1997) resulting in the formation of type I—NR2 molecules. On the other hand, quinoxaline derivatives are generally synthesized by refluxing diamines and oxalic acid in HCl (Oxtoby et al., 2005). We report here, that the reaction of the diethyl ester of naphtalene-bis(oxamate) (Rüffer et al., 2007), Fig. 4, with an excess of tert-BuNH2 in MeOH does not give the corresponding type I—NR2 molecule, but instead forms 1,4-dihydrobenzo[g]quinoxaline-2,3-dione (1). A similar reaction has been already described by Munoz et al. (1998), who treated o-phenylenebis(oxamate) with [Me4N]OH and Fe(ClO4)3 to obtain an analogous derivatized product in the form of its Fe(III) complex.
In the solid state 1 is nearly planar (r. m. s. d. of a calculated mean plane of C1–C12, O1, O2, N1, N2 = 0.017 Å). The bond lengths of the C═O functions of 1 (1.230 (4) and 1.240 (4) Å) reveal the molecule to be the dione tautomer in the solid state (Svenson, 1976). All other bond distances and angles are comparable those described for 1×3H2O (Oxtoby et al., 2005).
In the crystal structure of 1 the formation of a three-dimensional network is observed. Intermolecular hydrogen bonds between individual molecules of 1, cf. Table 1, form two-dimensional layers. A representative view of one selected two-dimensional layer is illustrated in Figure 2, showing the two-dimensional layers extending along the crystallographic b- and c-axes. Within the two-dimensional layers the formation of dimers of 1 with R22(8) type hydrogen bond interactions is also observed, as reported for 1×3H2O (Oxtoby et al., 2005), cf. N2—H2N···O2ii in Table 1 and Figure 2. However, due to the N1—H1N···O1i, hydrogen bond cf. Table 1, the dimers are connected further to form the two-dimensional layers.
Additionally, individual molecules of 1 interact with each other by means of π interactions. They are approximately arranged in a parallel-displaced sandwich type configuration and thus form one-dimensional layers along the crystallographic a-axis, cf. Figure 3. Within such a one-dimensional chain, a head-to-tail arrangement is observed, as reported previously for 1×3H2O (Oxtoby et al., 2005). Moreover, by analogy with 1×3H2O, the π stacks of 1 are arranged orthogonal to the two-dimensional layers formed by intermolecular hydrogen bonds. The combinations of both supramolecular arrangements finally give rise to a three-dimensional network structure.