organic compounds
3-(3-Nitrobenzyl)-4H-chromen-4-one
aSchool of Chemistry and Physics, University of KwaZulu-Natal, Private Bag X54001, Durban 4000, South Africa, bChemistry Department, University of Cape Town, Rondebosch 7701, South Africa, and cSchool of Chemical Engineering, University of KwaZulu-Natal, Durban 4041, South Africa
*Correspondence e-mail: koorbanally@ukzn.ac.za
In the title compound, C16H11NO4, the dihedral angle between the 10-membered coplanar chromone ring system and the benzene ring is 77.83 (3)°. In the crystal, weak C—H⋯O hydrogen bonds link the molecules into a three-dimensional network.
Related literature
For the preparation, see: Valkonen et al. (2012). For related structures, see: Sievänen et al. (2010); Gopaul et al. (2012); Valkonen et al. (2012). For general background to homoisoflavoinoids, see: Shaikh et al. (2011); du Toit et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 2012); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536813003589/ff2097sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813003589/ff2097Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813003589/ff2097Isup3.cml
A mixture of chroman-4-one (1.00 g, 6.75 mmol), 3-nitrobenzaldehyde (1.25 g, 8.10 mmol) and 10–15 drops of piperidine was heated at 80°C for 10 hrs. The reaction mixture was monitored for completion by thin layer
Upon completion, the reaction mixture was cooled, diluted with water and neutralized using 10% HCl. To the viscous reaction mixture, 15 ml of ethyl acetate was added. The homoisoflavonoid precipitated out upon the addition of hexane to the reaction mixture. The powdered product was filtered, washed with hexane and dried under vacuum. Upon slow evaporation of chloroform, the crystals of the homoisoflavonoid were obtained with a m.p. of 129–130 °C.All non-hydrogen atoms were refined anisotropically. All hydrogen atoms were placed in idealized positions and refined with geometrical constraints, and with Uiso(H) = 1.2Ueq(C).
Data collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. A view of the molecule with displacement ellipsoids drawn at the 50% probability level and H atoms drawn as circles of arbitary size. |
C16H11NO4 | F(000) = 584 |
Mr = 281.26 | Dx = 1.471 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 4.6082 (3) Å | Cell parameters from 16973 reflections |
b = 10.4219 (6) Å | θ = 1.5–31.6° |
c = 26.4468 (17) Å | µ = 0.11 mm−1 |
β = 90.428 (1)° | T = 173 K |
V = 1270.10 (14) Å3 | Plate, colourless |
Z = 4 | 0.42 × 0.22 × 0.04 mm |
Bruker Kappa DUO APEXII diffractometer | 4246 independent reflections |
Radiation source: fine-focus sealed tube | 3069 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
0.5° ϕ scans and ω scans | θmax = 31.6°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | h = −3→6 |
Tmin = 0.956, Tmax = 0.996 | k = −12→15 |
16973 measured reflections | l = −38→36 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.138 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0728P)2 + 0.2299P] where P = (Fo2 + 2Fc2)/3 |
4246 reflections | (Δ/σ)max < 0.001 |
190 parameters | Δρmax = 0.44 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C16H11NO4 | V = 1270.10 (14) Å3 |
Mr = 281.26 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 4.6082 (3) Å | µ = 0.11 mm−1 |
b = 10.4219 (6) Å | T = 173 K |
c = 26.4468 (17) Å | 0.42 × 0.22 × 0.04 mm |
β = 90.428 (1)° |
Bruker Kappa DUO APEXII diffractometer | 4246 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | 3069 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.996 | Rint = 0.030 |
16973 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.138 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.44 e Å−3 |
4246 reflections | Δρmin = −0.19 e Å−3 |
190 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.74839 (19) | 0.65066 (9) | 0.16340 (3) | 0.0297 (2) | |
O2 | 0.12234 (19) | 0.86867 (9) | 0.23054 (3) | 0.0307 (2) | |
O3 | 0.0611 (3) | 0.69688 (13) | 0.46889 (4) | 0.0563 (4) | |
O4 | 0.2296 (3) | 0.87629 (13) | 0.49596 (4) | 0.0569 (3) | |
N1 | 0.2075 (3) | 0.79369 (12) | 0.46362 (4) | 0.0364 (3) | |
C1 | 0.6196 (2) | 0.74864 (12) | 0.13678 (4) | 0.0254 (2) | |
C2 | 0.6533 (3) | 0.62632 (12) | 0.21073 (5) | 0.0281 (2) | |
H2 | 0.7393 | 0.5562 | 0.2282 | 0.034* | |
C3 | 0.4471 (3) | 0.69311 (11) | 0.23514 (4) | 0.0243 (2) | |
C4 | 0.3094 (2) | 0.80163 (11) | 0.21004 (4) | 0.0229 (2) | |
C5 | 0.4068 (2) | 0.82546 (11) | 0.15828 (4) | 0.0228 (2) | |
C6 | 0.2875 (3) | 0.92474 (12) | 0.12884 (5) | 0.0304 (3) | |
H6 | 0.1413 | 0.9783 | 0.1426 | 0.037* | |
C7 | 0.3805 (3) | 0.94494 (15) | 0.08021 (5) | 0.0380 (3) | |
H7 | 0.2999 | 1.0127 | 0.0606 | 0.046* | |
C8 | 0.5929 (3) | 0.86601 (16) | 0.05974 (5) | 0.0392 (3) | |
H8 | 0.6559 | 0.8806 | 0.0261 | 0.047* | |
C9 | 0.7132 (3) | 0.76728 (14) | 0.08729 (5) | 0.0343 (3) | |
H9 | 0.8565 | 0.7131 | 0.0730 | 0.041* | |
C10 | 0.3523 (3) | 0.65438 (12) | 0.28725 (5) | 0.0303 (3) | |
H10A | 0.4365 | 0.5691 | 0.2949 | 0.036* | |
H10B | 0.1386 | 0.6446 | 0.2868 | 0.036* | |
C11 | 0.4334 (2) | 0.74495 (11) | 0.32985 (4) | 0.0238 (2) | |
C12 | 0.2953 (3) | 0.72947 (12) | 0.37618 (4) | 0.0265 (2) | |
H12 | 0.1554 | 0.6635 | 0.3805 | 0.032* | |
C13 | 0.3633 (3) | 0.81075 (12) | 0.41575 (4) | 0.0261 (2) | |
C14 | 0.5657 (3) | 0.90853 (12) | 0.41192 (5) | 0.0292 (3) | |
H14 | 0.6065 | 0.9640 | 0.4396 | 0.035* | |
C15 | 0.7057 (3) | 0.92194 (12) | 0.36619 (5) | 0.0305 (3) | |
H15 | 0.8482 | 0.9871 | 0.3624 | 0.037* | |
C16 | 0.6411 (3) | 0.84133 (12) | 0.32557 (5) | 0.0265 (2) | |
H16 | 0.7402 | 0.8523 | 0.2945 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0335 (4) | 0.0285 (4) | 0.0271 (4) | 0.0059 (3) | 0.0036 (3) | −0.0029 (3) |
O2 | 0.0348 (5) | 0.0295 (5) | 0.0280 (5) | 0.0034 (4) | 0.0080 (3) | −0.0026 (4) |
O3 | 0.0700 (8) | 0.0657 (8) | 0.0335 (6) | −0.0301 (6) | 0.0160 (5) | −0.0001 (5) |
O4 | 0.0765 (8) | 0.0620 (8) | 0.0325 (6) | −0.0123 (6) | 0.0152 (5) | −0.0182 (5) |
N1 | 0.0398 (6) | 0.0462 (7) | 0.0233 (5) | −0.0044 (5) | 0.0039 (4) | −0.0002 (5) |
C1 | 0.0279 (5) | 0.0265 (5) | 0.0218 (5) | −0.0018 (4) | 0.0010 (4) | −0.0024 (4) |
C2 | 0.0361 (6) | 0.0226 (5) | 0.0256 (6) | 0.0018 (5) | −0.0035 (4) | −0.0009 (4) |
C3 | 0.0329 (6) | 0.0202 (5) | 0.0198 (5) | −0.0043 (4) | −0.0007 (4) | −0.0008 (4) |
C4 | 0.0267 (5) | 0.0210 (5) | 0.0212 (5) | −0.0042 (4) | 0.0020 (4) | −0.0018 (4) |
C5 | 0.0264 (5) | 0.0227 (5) | 0.0194 (5) | −0.0023 (4) | 0.0010 (4) | −0.0003 (4) |
C6 | 0.0347 (6) | 0.0291 (6) | 0.0275 (6) | 0.0014 (5) | 0.0007 (5) | 0.0044 (5) |
C7 | 0.0466 (8) | 0.0399 (7) | 0.0274 (7) | −0.0025 (6) | −0.0010 (5) | 0.0105 (6) |
C8 | 0.0419 (7) | 0.0533 (9) | 0.0224 (6) | −0.0078 (6) | 0.0056 (5) | 0.0041 (6) |
C9 | 0.0349 (6) | 0.0434 (7) | 0.0247 (6) | −0.0021 (6) | 0.0073 (5) | −0.0057 (5) |
C10 | 0.0455 (7) | 0.0238 (5) | 0.0215 (6) | −0.0092 (5) | 0.0003 (5) | 0.0012 (4) |
C11 | 0.0289 (5) | 0.0220 (5) | 0.0206 (5) | −0.0007 (4) | −0.0010 (4) | 0.0018 (4) |
C12 | 0.0298 (5) | 0.0269 (5) | 0.0230 (6) | −0.0058 (4) | 0.0002 (4) | 0.0028 (4) |
C13 | 0.0296 (5) | 0.0297 (6) | 0.0191 (5) | 0.0006 (4) | 0.0012 (4) | 0.0014 (4) |
C14 | 0.0333 (6) | 0.0275 (6) | 0.0269 (6) | −0.0015 (5) | −0.0029 (5) | −0.0036 (5) |
C15 | 0.0317 (6) | 0.0286 (6) | 0.0312 (6) | −0.0080 (5) | −0.0001 (5) | −0.0004 (5) |
C16 | 0.0287 (5) | 0.0265 (5) | 0.0243 (6) | −0.0029 (4) | 0.0021 (4) | 0.0010 (4) |
O1—C2 | 1.3533 (15) | C7—H7 | 0.9500 |
O1—C1 | 1.3727 (15) | C8—C9 | 1.375 (2) |
O2—C4 | 1.2377 (14) | C8—H8 | 0.9500 |
O3—N1 | 1.2222 (17) | C9—H9 | 0.9500 |
O4—N1 | 1.2172 (16) | C10—C11 | 1.5145 (16) |
N1—C13 | 1.4709 (16) | C10—H10A | 0.9900 |
C1—C5 | 1.3905 (16) | C10—H10B | 0.9900 |
C1—C9 | 1.3949 (17) | C11—C16 | 1.3926 (16) |
C2—C3 | 1.3467 (17) | C11—C12 | 1.3942 (16) |
C2—H2 | 0.9500 | C12—C13 | 1.3804 (17) |
C3—C4 | 1.4546 (16) | C12—H12 | 0.9500 |
C3—C10 | 1.5042 (16) | C13—C14 | 1.3858 (18) |
C4—C5 | 1.4650 (15) | C14—C15 | 1.3823 (18) |
C5—C6 | 1.4047 (17) | C14—H14 | 0.9500 |
C6—C7 | 1.3748 (18) | C15—C16 | 1.3941 (17) |
C6—H6 | 0.9500 | C15—H15 | 0.9500 |
C7—C8 | 1.391 (2) | C16—H16 | 0.9500 |
C2—O1—C1 | 118.16 (9) | C8—C9—C1 | 118.37 (12) |
O4—N1—O3 | 123.17 (12) | C8—C9—H9 | 120.8 |
O4—N1—C13 | 118.71 (12) | C1—C9—H9 | 120.8 |
O3—N1—C13 | 118.12 (12) | C3—C10—C11 | 116.27 (10) |
O1—C1—C5 | 121.47 (10) | C3—C10—H10A | 108.2 |
O1—C1—C9 | 116.69 (11) | C11—C10—H10A | 108.2 |
C5—C1—C9 | 121.83 (12) | C3—C10—H10B | 108.2 |
C3—C2—O1 | 125.53 (11) | C11—C10—H10B | 108.2 |
C3—C2—H2 | 117.2 | H10A—C10—H10B | 107.4 |
O1—C2—H2 | 117.2 | C16—C11—C12 | 118.25 (11) |
C2—C3—C4 | 119.35 (11) | C16—C11—C10 | 123.71 (11) |
C2—C3—C10 | 120.76 (11) | C12—C11—C10 | 118.03 (10) |
C4—C3—C10 | 119.87 (10) | C13—C12—C11 | 119.51 (11) |
O2—C4—C3 | 122.81 (10) | C13—C12—H12 | 120.2 |
O2—C4—C5 | 122.20 (11) | C11—C12—H12 | 120.2 |
C3—C4—C5 | 114.98 (10) | C12—C13—C14 | 123.03 (11) |
C1—C5—C6 | 118.15 (11) | C12—C13—N1 | 117.96 (11) |
C1—C5—C4 | 120.43 (10) | C14—C13—N1 | 119.00 (11) |
C6—C5—C4 | 121.42 (11) | C15—C14—C13 | 117.20 (11) |
C7—C6—C5 | 120.52 (12) | C15—C14—H14 | 121.4 |
C7—C6—H6 | 119.7 | C13—C14—H14 | 121.4 |
C5—C6—H6 | 119.7 | C14—C15—C16 | 120.98 (11) |
C6—C7—C8 | 119.91 (13) | C14—C15—H15 | 119.5 |
C6—C7—H7 | 120.0 | C16—C15—H15 | 119.5 |
C8—C7—H7 | 120.0 | C11—C16—C15 | 121.00 (11) |
C9—C8—C7 | 121.22 (12) | C11—C16—H16 | 119.5 |
C9—C8—H8 | 119.4 | C15—C16—H16 | 119.5 |
C7—C8—H8 | 119.4 | ||
C2—O1—C1—C5 | 3.07 (16) | C7—C8—C9—C1 | −0.7 (2) |
C2—O1—C1—C9 | −177.07 (11) | O1—C1—C9—C8 | −178.84 (12) |
C1—O1—C2—C3 | −2.33 (18) | C5—C1—C9—C8 | 1.02 (19) |
O1—C2—C3—C4 | −0.18 (19) | C2—C3—C10—C11 | 111.41 (14) |
O1—C2—C3—C10 | 178.04 (11) | C4—C3—C10—C11 | −70.37 (15) |
C2—C3—C4—O2 | −178.62 (11) | C3—C10—C11—C16 | −15.66 (18) |
C10—C3—C4—O2 | 3.14 (17) | C3—C10—C11—C12 | 165.39 (11) |
C2—C3—C4—C5 | 1.83 (16) | C16—C11—C12—C13 | 1.26 (17) |
C10—C3—C4—C5 | −176.41 (10) | C10—C11—C12—C13 | −179.73 (11) |
O1—C1—C5—C6 | 179.30 (11) | C11—C12—C13—C14 | −0.19 (19) |
C9—C1—C5—C6 | −0.55 (18) | C11—C12—C13—N1 | 178.39 (11) |
O1—C1—C5—C4 | −1.39 (17) | O4—N1—C13—C12 | −168.33 (13) |
C9—C1—C5—C4 | 178.76 (11) | O3—N1—C13—C12 | 11.53 (19) |
O2—C4—C5—C1 | 179.38 (11) | O4—N1—C13—C14 | 10.31 (19) |
C3—C4—C5—C1 | −1.07 (15) | O3—N1—C13—C14 | −169.83 (13) |
O2—C4—C5—C6 | −1.33 (18) | C12—C13—C14—C15 | −0.96 (19) |
C3—C4—C5—C6 | 178.22 (11) | N1—C13—C14—C15 | −179.52 (12) |
C1—C5—C6—C7 | −0.23 (19) | C13—C14—C15—C16 | 1.02 (19) |
C4—C5—C6—C7 | −179.53 (12) | C12—C11—C16—C15 | −1.20 (18) |
C5—C6—C7—C8 | 0.5 (2) | C10—C11—C16—C15 | 179.86 (12) |
C6—C7—C8—C9 | 0.0 (2) | C14—C15—C16—C11 | 0.0 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O2 | 0.95 | 2.32 | 3.2663 (15) | 171 |
C7—H7···O3i | 0.95 | 2.65 | 3.5614 (19) | 160 |
C8—H8···O3ii | 0.95 | 2.54 | 3.3071 (18) | 138 |
C14—H14···O4iii | 0.95 | 2.50 | 3.4380 (17) | 172 |
C15—H15···O1iv | 0.95 | 2.62 | 3.5569 (15) | 170 |
C16—H16···O2v | 0.95 | 2.46 | 3.3764 (15) | 163 |
Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) x+1, −y+3/2, z−1/2; (iii) −x+1, −y+2, −z+1; (iv) −x+2, y+1/2, −z+1/2; (v) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C16H11NO4 |
Mr | 281.26 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 4.6082 (3), 10.4219 (6), 26.4468 (17) |
β (°) | 90.428 (1) |
V (Å3) | 1270.10 (14) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.42 × 0.22 × 0.04 |
Data collection | |
Diffractometer | Bruker Kappa DUO APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1997) |
Tmin, Tmax | 0.956, 0.996 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16973, 4246, 3069 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.736 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.138, 1.04 |
No. of reflections | 4246 |
No. of parameters | 190 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.44, −0.19 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 2012).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O2 | 0.95 | 2.32 | 3.2663 (15) | 170.8 |
C7—H7···O3i | 0.95 | 2.65 | 3.5614 (19) | 160.0 |
C8—H8···O3ii | 0.95 | 2.54 | 3.3071 (18) | 137.5 |
C14—H14···O4iii | 0.95 | 2.50 | 3.4380 (17) | 171.5 |
C15—H15···O1iv | 0.95 | 2.62 | 3.5569 (15) | 170.4 |
C16—H16···O2v | 0.95 | 2.46 | 3.3764 (15) | 162.9 |
Symmetry codes: (i) −x, y+1/2, −z+1/2; (ii) x+1, −y+3/2, z−1/2; (iii) −x+1, −y+2, −z+1; (iv) −x+2, y+1/2, −z+1/2; (v) x+1, y, z. |
Acknowledgements
We thank the University of KwaZulu-Natal and the South Africa Research Chairs initiative of the Department of Science and Technology for financial support and the National Research Foundation of South Africa for a bursary for KG.
References
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The title compound, 3-(3-nitrobenzyl)-2-chromen-4-one, belongs to a class of compounds called homoisoflavonoids, which are C-16, α,β unsaturated carbonyl compounds containing two aromatic rings. Homoisoflavonoids may be categorized into four groups depending on the type of structural backbone present. The four groups are 3-benzyl-4-chromanones, of which the title compound belongs to as well as the, 3-benzylidene-4-chromanones, 3-benzyl-3-hydroxy-4-chromanones and scillascillins (du Toit et al., 2010). The most commonly used procedure for the synthesis of homoisoflavoinoids involves the condensation of chroman-4-one with an aromatic aldehyde in the presence of either an acidic or basic catalyst (Shaikh et al., 2011).
The molecular structure of the title compound is shown in Fig.1. The dihedral angle between the 10-membered co-planar ring O1—C1—C9—C8—C7—C6—C5—C4—C3—C2 and the benzene ring C11—C12—C13—C14—C15—C16 is 77.83 (3)°. In the crystal packing, a number of weak intermolecular C—H···O hydrogen bonds are noted and are listed in Table 1.