organic compounds
(Z)-N-[2-(N′-Hydroxycarbamimidoyl)phenyl]acetamide
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, PO Box 2457, Riyadh 11451, Saudi Arabia, and cDepartment of Chemistry, Mangalore University, Karnataka, India
*Correspondence e-mail: hkfun@usm.my
The 9H11N3O2, contains two molecules (A and B), which exist in Z conformations with respect to their C=N double bond. The dihedral angles between the benzene ring and the pendant hydroxycarbamimidoyl and acetamide groups are 28.58 (7) and 1.30 (5)°, respectively, in molecule A and 25.04 (7) and 27.85 (9)°, respectively, in molecule B. An intramolecular N—H⋯N hydrogen bond generates an S(6) ring in both molecules. Molecule A also features an intramolecular C—H⋯O interaction, which closes an S(6) ring. In the crystal, the molecules are linked by N—H⋯O, N—H⋯N, O—H⋯O, O—H⋯N, C—H⋯O and C—H⋯N hydrogen bonds and C—H⋯π interactions, generating a three-dimensional network.
of the title compound, CRelated literature
For background and applications of amidoximes, see: Clapp (1976, 1984); Jochims (1996); Fylaktakidou et al. (2008); Mansuy & Boucher (2004); Kontogiorgis & Hadjipavlou-Litina (2002); Wang et al. (2002). For hydrogen-bond motifs, see: Bernstein et al. (1995). For bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813003371/hb7034sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813003371/hb7034Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813003371/hb7034Isup3.cml
Equimolar amount of N-(2-cyanophenyl)acetamide (10 mmol) and NH2OH.HCl (10 mmol) were dissolved in a minimum amount of methanol(10 ml)-water (5 ml) and followed by the addition of Na2CO3 (5 mmol). The solution was refluxed for 2 h. The solid product formed was collected through filtration and then evaporated to dryness. The product was redissolved in MeOH for recrystalliziation as colourless plates. M. P.: 145°C.
All N and O bound H atoms were located from the difference map and were refined freely [N–H = 0.857 (19)–0.90 (2) Å and O–H = 0.93 (2) and 0.95 (2) Å]. The remaining H atoms were positioned geometrically and refined using a riding model with Uiso(H) = 1.2 or 1.5Ueq(C) (C–H = 0.9500 and 0.9800 Å). A rotating group model was applied to the methyl groups.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids. Dashed lines indicate the intramolecular hydrogen bonds. | |
Fig. 2. The crystal packing of the title compound, viewed along the b axis. H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity. |
C9H11N3O2 | Z = 4 |
Mr = 193.21 | F(000) = 408 |
Triclinic, P1 | Dx = 1.394 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.7813 (12) Å | Cell parameters from 3493 reflections |
b = 9.5432 (13) Å | θ = 2.3–28.5° |
c = 11.9770 (15) Å | µ = 0.10 mm−1 |
α = 80.722 (2)° | T = 100 K |
β = 78.531 (2)° | Plate, colourless |
γ = 70.181 (2)° | 0.35 × 0.20 × 0.05 mm |
V = 920.6 (2) Å3 |
Bruker APEX DUO CCD diffractometer | 4680 independent reflections |
Radiation source: fine-focus sealed tube | 3815 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ϕ and ω scans | θmax = 28.6°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→7 |
Tmin = 0.965, Tmax = 0.995 | k = −12→12 |
12849 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.116 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0538P)2 + 0.261P] where P = (Fo2 + 2Fc2)/3 |
4680 reflections | (Δ/σ)max < 0.001 |
287 parameters | Δρmax = 0.34 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C9H11N3O2 | γ = 70.181 (2)° |
Mr = 193.21 | V = 920.6 (2) Å3 |
Triclinic, P1 | Z = 4 |
a = 8.7813 (12) Å | Mo Kα radiation |
b = 9.5432 (13) Å | µ = 0.10 mm−1 |
c = 11.9770 (15) Å | T = 100 K |
α = 80.722 (2)° | 0.35 × 0.20 × 0.05 mm |
β = 78.531 (2)° |
Bruker APEX DUO CCD diffractometer | 4680 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3815 reflections with I > 2σ(I) |
Tmin = 0.965, Tmax = 0.995 | Rint = 0.031 |
12849 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.116 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.34 e Å−3 |
4680 reflections | Δρmin = −0.26 e Å−3 |
287 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1A | 1.06478 (11) | 0.25713 (11) | 0.46170 (9) | 0.0183 (2) | |
O2A | 0.37005 (11) | 0.17841 (12) | 0.55131 (8) | 0.0200 (2) | |
N1A | 0.91075 (13) | 0.26562 (12) | 0.43516 (9) | 0.0136 (2) | |
N2A | 0.91118 (15) | 0.50889 (14) | 0.36926 (11) | 0.0188 (3) | |
N3A | 0.59696 (13) | 0.25477 (13) | 0.50343 (9) | 0.0132 (2) | |
C1A | 0.55777 (15) | 0.36511 (14) | 0.41114 (11) | 0.0125 (2) | |
C2A | 0.40471 (16) | 0.41035 (15) | 0.37477 (11) | 0.0149 (3) | |
H2AA | 0.3247 | 0.3646 | 0.4118 | 0.018* | |
C3A | 0.36921 (16) | 0.52204 (15) | 0.28463 (12) | 0.0168 (3) | |
H3AA | 0.2645 | 0.5525 | 0.2613 | 0.020* | |
C4A | 0.48421 (17) | 0.58940 (15) | 0.22839 (11) | 0.0167 (3) | |
H4AA | 0.4596 | 0.6644 | 0.1661 | 0.020* | |
C5A | 0.63585 (16) | 0.54578 (15) | 0.26423 (11) | 0.0146 (3) | |
H5AA | 0.7146 | 0.5924 | 0.2261 | 0.018* | |
C6A | 0.67591 (15) | 0.43462 (14) | 0.35539 (11) | 0.0121 (2) | |
C7A | 0.83924 (15) | 0.39970 (14) | 0.39030 (11) | 0.0125 (2) | |
C8A | 0.50778 (15) | 0.16825 (14) | 0.56596 (11) | 0.0134 (3) | |
C9A | 0.59175 (17) | 0.05670 (16) | 0.65623 (12) | 0.0185 (3) | |
H9AA | 0.6019 | −0.0446 | 0.6420 | 0.028* | |
H9AB | 0.5271 | 0.0779 | 0.7318 | 0.028* | |
H9AC | 0.7010 | 0.0641 | 0.6537 | 0.028* | |
O1B | 1.10383 (11) | 0.00132 (11) | 0.61515 (8) | 0.0152 (2) | |
O2B | 0.71673 (13) | −0.21124 (12) | 1.05408 (8) | 0.0231 (2) | |
N1B | 0.97720 (13) | 0.02967 (12) | 0.71262 (9) | 0.0141 (2) | |
N2B | 1.14247 (14) | 0.15404 (13) | 0.75828 (11) | 0.0161 (2) | |
N3B | 0.79291 (14) | −0.06646 (13) | 0.89487 (10) | 0.0159 (2) | |
C1B | 0.78846 (16) | 0.06046 (15) | 0.94314 (11) | 0.0149 (3) | |
C2B | 0.68093 (17) | 0.10631 (16) | 1.04286 (12) | 0.0197 (3) | |
H2BA | 0.6093 | 0.0513 | 1.0793 | 0.024* | |
C3B | 0.67802 (19) | 0.23181 (17) | 1.08911 (13) | 0.0234 (3) | |
H3BA | 0.6063 | 0.2608 | 1.1580 | 0.028* | |
C4B | 0.77935 (18) | 0.31493 (17) | 1.03513 (13) | 0.0223 (3) | |
H4BA | 0.7768 | 0.4011 | 1.0665 | 0.027* | |
C5B | 0.88416 (17) | 0.27147 (15) | 0.93527 (12) | 0.0180 (3) | |
H5BA | 0.9524 | 0.3295 | 0.8983 | 0.022* | |
C6B | 0.89229 (15) | 0.14440 (14) | 0.88740 (11) | 0.0139 (3) | |
C7B | 1.01102 (15) | 0.10389 (14) | 0.78082 (11) | 0.0126 (2) | |
C8B | 0.76306 (17) | −0.19266 (16) | 0.95037 (12) | 0.0179 (3) | |
C9B | 0.7947 (2) | −0.31289 (18) | 0.87350 (13) | 0.0274 (3) | |
H9BA | 0.7122 | −0.3641 | 0.8981 | 0.041* | |
H9BB | 0.9041 | −0.3853 | 0.8780 | 0.041* | |
H9BC | 0.7886 | −0.2676 | 0.7944 | 0.041* | |
H3NA | 0.696 (2) | 0.235 (2) | 0.5204 (15) | 0.030 (5)* | |
H3NB | 0.840 (2) | −0.069 (2) | 0.8244 (17) | 0.028 (5)* | |
H1NA | 0.998 (2) | 0.488 (2) | 0.3996 (15) | 0.024 (5)* | |
H1NB | 1.181 (2) | 0.165 (2) | 0.8176 (18) | 0.036 (5)* | |
H2NA | 0.851 (2) | 0.602 (3) | 0.3617 (17) | 0.038 (5)* | |
H2NB | 1.218 (2) | 0.116 (2) | 0.6985 (17) | 0.030 (5)* | |
H1OA | 1.085 (2) | 0.168 (2) | 0.5101 (17) | 0.038 (5)* | |
H1OB | 1.095 (2) | −0.089 (2) | 0.5974 (17) | 0.037 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0131 (5) | 0.0187 (5) | 0.0250 (5) | −0.0069 (4) | −0.0079 (4) | 0.0030 (4) |
O2A | 0.0145 (5) | 0.0259 (5) | 0.0208 (5) | −0.0105 (4) | −0.0049 (4) | 0.0061 (4) |
N1A | 0.0104 (5) | 0.0155 (5) | 0.0161 (5) | −0.0054 (4) | −0.0037 (4) | −0.0003 (4) |
N2A | 0.0166 (6) | 0.0137 (6) | 0.0280 (7) | −0.0070 (5) | −0.0077 (5) | 0.0023 (5) |
N3A | 0.0103 (5) | 0.0165 (5) | 0.0125 (5) | −0.0049 (4) | −0.0020 (4) | 0.0010 (4) |
C1A | 0.0138 (6) | 0.0125 (6) | 0.0101 (6) | −0.0029 (5) | −0.0008 (5) | −0.0017 (5) |
C2A | 0.0137 (6) | 0.0172 (6) | 0.0133 (6) | −0.0044 (5) | −0.0015 (5) | −0.0019 (5) |
C3A | 0.0141 (6) | 0.0188 (7) | 0.0164 (7) | −0.0019 (5) | −0.0056 (5) | −0.0023 (5) |
C4A | 0.0204 (7) | 0.0149 (6) | 0.0127 (6) | −0.0030 (5) | −0.0047 (5) | 0.0011 (5) |
C5A | 0.0171 (6) | 0.0141 (6) | 0.0121 (6) | −0.0054 (5) | −0.0004 (5) | −0.0011 (5) |
C6A | 0.0128 (6) | 0.0105 (6) | 0.0123 (6) | −0.0020 (5) | −0.0015 (5) | −0.0031 (5) |
C7A | 0.0135 (6) | 0.0137 (6) | 0.0104 (6) | −0.0051 (5) | 0.0007 (5) | −0.0033 (5) |
C8A | 0.0125 (6) | 0.0145 (6) | 0.0123 (6) | −0.0043 (5) | −0.0002 (5) | −0.0013 (5) |
C9A | 0.0165 (6) | 0.0201 (7) | 0.0183 (7) | −0.0079 (5) | −0.0039 (5) | 0.0057 (5) |
O1B | 0.0169 (5) | 0.0158 (5) | 0.0129 (5) | −0.0068 (4) | 0.0026 (4) | −0.0036 (4) |
O2B | 0.0321 (6) | 0.0288 (6) | 0.0148 (5) | −0.0197 (5) | −0.0053 (4) | 0.0044 (4) |
N1B | 0.0142 (5) | 0.0161 (5) | 0.0112 (5) | −0.0051 (4) | 0.0010 (4) | −0.0019 (4) |
N2B | 0.0182 (6) | 0.0189 (6) | 0.0138 (6) | −0.0093 (5) | −0.0020 (5) | −0.0020 (5) |
N3B | 0.0194 (6) | 0.0171 (6) | 0.0122 (6) | −0.0087 (5) | −0.0010 (4) | 0.0008 (4) |
C1B | 0.0162 (6) | 0.0146 (6) | 0.0126 (6) | −0.0029 (5) | −0.0047 (5) | 0.0015 (5) |
C2B | 0.0181 (7) | 0.0214 (7) | 0.0164 (7) | −0.0045 (5) | −0.0007 (5) | 0.0013 (5) |
C3B | 0.0248 (7) | 0.0228 (7) | 0.0157 (7) | −0.0004 (6) | 0.0016 (6) | −0.0039 (6) |
C4B | 0.0268 (7) | 0.0184 (7) | 0.0193 (7) | −0.0031 (6) | −0.0018 (6) | −0.0067 (6) |
C5B | 0.0199 (7) | 0.0160 (6) | 0.0175 (7) | −0.0047 (5) | −0.0034 (5) | −0.0012 (5) |
C6B | 0.0142 (6) | 0.0139 (6) | 0.0121 (6) | −0.0019 (5) | −0.0043 (5) | 0.0001 (5) |
C7B | 0.0139 (6) | 0.0102 (6) | 0.0124 (6) | −0.0032 (5) | −0.0028 (5) | 0.0020 (4) |
C8B | 0.0188 (6) | 0.0210 (7) | 0.0172 (7) | −0.0110 (5) | −0.0055 (5) | 0.0030 (5) |
C9B | 0.0428 (9) | 0.0228 (8) | 0.0219 (8) | −0.0187 (7) | −0.0041 (7) | −0.0002 (6) |
O1A—N1A | 1.4232 (13) | O1B—N1B | 1.4333 (14) |
O1A—H1OA | 0.93 (2) | O1B—H1OB | 0.95 (2) |
O2A—C8A | 1.2257 (16) | O2B—C8B | 1.2315 (17) |
N1A—C7A | 1.2992 (17) | N1B—C7B | 1.2972 (17) |
N2A—C7A | 1.3590 (16) | N2B—C7B | 1.3577 (16) |
N2A—H1NA | 0.857 (19) | N2B—H1NB | 0.88 (2) |
N2A—H2NA | 0.87 (2) | N2B—H2NB | 0.90 (2) |
N3A—C8A | 1.3644 (16) | N3B—C8B | 1.3593 (17) |
N3A—C1A | 1.4069 (16) | N3B—C1B | 1.4098 (17) |
N3A—H3NA | 0.885 (19) | N3B—H3NB | 0.863 (19) |
C1A—C2A | 1.4005 (18) | C1B—C2B | 1.3962 (19) |
C1A—C6A | 1.4179 (17) | C1B—C6B | 1.4140 (18) |
C2A—C3A | 1.3915 (18) | C2B—C3B | 1.389 (2) |
C2A—H2AA | 0.9500 | C2B—H2BA | 0.9500 |
C3A—C4A | 1.3845 (19) | C3B—C4B | 1.387 (2) |
C3A—H3AA | 0.9500 | C3B—H3BA | 0.9500 |
C4A—C5A | 1.3873 (19) | C4B—C5B | 1.383 (2) |
C4A—H4AA | 0.9500 | C4B—H4BA | 0.9500 |
C5A—C6A | 1.4027 (17) | C5B—C6B | 1.3977 (19) |
C5A—H5AA | 0.9500 | C5B—H5BA | 0.9500 |
C6A—C7A | 1.4874 (17) | C6B—C7B | 1.4907 (18) |
C8A—C9A | 1.5031 (18) | C8B—C9B | 1.505 (2) |
C9A—H9AA | 0.9800 | C9B—H9BA | 0.9800 |
C9A—H9AB | 0.9800 | C9B—H9BB | 0.9800 |
C9A—H9AC | 0.9800 | C9B—H9BC | 0.9800 |
N1A—O1A—H1OA | 99.4 (12) | N1B—O1B—H1OB | 99.3 (12) |
C7A—N1A—O1A | 109.97 (10) | C7B—N1B—O1B | 109.89 (10) |
C7A—N2A—H1NA | 114.6 (12) | C7B—N2B—H1NB | 116.8 (13) |
C7A—N2A—H2NA | 119.9 (13) | C7B—N2B—H2NB | 114.9 (12) |
H1NA—N2A—H2NA | 117.3 (18) | H1NB—N2B—H2NB | 115.9 (17) |
C8A—N3A—C1A | 129.30 (11) | C8B—N3B—C1B | 127.77 (12) |
C8A—N3A—H3NA | 115.5 (12) | C8B—N3B—H3NB | 117.8 (12) |
C1A—N3A—H3NA | 115.1 (12) | C1B—N3B—H3NB | 113.0 (12) |
C2A—C1A—N3A | 121.95 (11) | C2B—C1B—N3B | 121.21 (12) |
C2A—C1A—C6A | 119.31 (12) | C2B—C1B—C6B | 119.76 (12) |
N3A—C1A—C6A | 118.72 (11) | N3B—C1B—C6B | 119.01 (12) |
C3A—C2A—C1A | 120.31 (12) | C3B—C2B—C1B | 120.43 (13) |
C3A—C2A—H2AA | 119.8 | C3B—C2B—H2BA | 119.8 |
C1A—C2A—H2AA | 119.8 | C1B—C2B—H2BA | 119.8 |
C4A—C3A—C2A | 120.99 (12) | C4B—C3B—C2B | 120.26 (13) |
C4A—C3A—H3AA | 119.5 | C4B—C3B—H3BA | 119.9 |
C2A—C3A—H3AA | 119.5 | C2B—C3B—H3BA | 119.9 |
C3A—C4A—C5A | 119.06 (12) | C5B—C4B—C3B | 119.55 (13) |
C3A—C4A—H4AA | 120.5 | C5B—C4B—H4BA | 120.2 |
C5A—C4A—H4AA | 120.5 | C3B—C4B—H4BA | 120.2 |
C4A—C5A—C6A | 121.70 (12) | C4B—C5B—C6B | 121.71 (13) |
C4A—C5A—H5AA | 119.1 | C4B—C5B—H5BA | 119.1 |
C6A—C5A—H5AA | 119.1 | C6B—C5B—H5BA | 119.1 |
C5A—C6A—C1A | 118.61 (11) | C5B—C6B—C1B | 118.27 (12) |
C5A—C6A—C7A | 117.69 (11) | C5B—C6B—C7B | 118.22 (12) |
C1A—C6A—C7A | 123.68 (11) | C1B—C6B—C7B | 123.51 (12) |
N1A—C7A—N2A | 122.40 (12) | N1B—C7B—N2B | 124.22 (12) |
N1A—C7A—C6A | 119.40 (11) | N1B—C7B—C6B | 117.67 (11) |
N2A—C7A—C6A | 118.14 (12) | N2B—C7B—C6B | 118.01 (11) |
O2A—C8A—N3A | 123.82 (12) | O2B—C8B—N3B | 124.54 (13) |
O2A—C8A—C9A | 121.50 (11) | O2B—C8B—C9B | 121.64 (13) |
N3A—C8A—C9A | 114.68 (11) | N3B—C8B—C9B | 113.82 (12) |
C8A—C9A—H9AA | 109.5 | C8B—C9B—H9BA | 109.5 |
C8A—C9A—H9AB | 109.5 | C8B—C9B—H9BB | 109.5 |
H9AA—C9A—H9AB | 109.5 | H9BA—C9B—H9BB | 109.5 |
C8A—C9A—H9AC | 109.5 | C8B—C9B—H9BC | 109.5 |
H9AA—C9A—H9AC | 109.5 | H9BA—C9B—H9BC | 109.5 |
H9AB—C9A—H9AC | 109.5 | H9BB—C9B—H9BC | 109.5 |
C8A—N3A—C1A—C2A | 5.0 (2) | C8B—N3B—C1B—C2B | −31.7 (2) |
C8A—N3A—C1A—C6A | −176.47 (12) | C8B—N3B—C1B—C6B | 149.88 (14) |
N3A—C1A—C2A—C3A | 178.69 (12) | N3B—C1B—C2B—C3B | −179.89 (13) |
C6A—C1A—C2A—C3A | 0.20 (19) | C6B—C1B—C2B—C3B | −1.5 (2) |
C1A—C2A—C3A—C4A | 0.7 (2) | C1B—C2B—C3B—C4B | 1.5 (2) |
C2A—C3A—C4A—C5A | −1.0 (2) | C2B—C3B—C4B—C5B | −0.4 (2) |
C3A—C4A—C5A—C6A | 0.4 (2) | C3B—C4B—C5B—C6B | −0.7 (2) |
C4A—C5A—C6A—C1A | 0.45 (19) | C4B—C5B—C6B—C1B | 0.7 (2) |
C4A—C5A—C6A—C7A | −177.74 (12) | C4B—C5B—C6B—C7B | −178.83 (12) |
C2A—C1A—C6A—C5A | −0.76 (18) | C2B—C1B—C6B—C5B | 0.42 (19) |
N3A—C1A—C6A—C5A | −179.30 (12) | N3B—C1B—C6B—C5B | 178.85 (12) |
C2A—C1A—C6A—C7A | 177.32 (12) | C2B—C1B—C6B—C7B | 179.89 (12) |
N3A—C1A—C6A—C7A | −1.22 (18) | N3B—C1B—C6B—C7B | −1.69 (19) |
O1A—N1A—C7A—N2A | 2.73 (17) | O1B—N1B—C7B—N2B | 3.63 (17) |
O1A—N1A—C7A—C6A | 179.87 (10) | O1B—N1B—C7B—C6B | 179.80 (10) |
C5A—C6A—C7A—N1A | −150.83 (12) | C5B—C6B—C7B—N1B | −152.96 (12) |
C1A—C6A—C7A—N1A | 31.08 (18) | C1B—C6B—C7B—N1B | 27.57 (18) |
C5A—C6A—C7A—N2A | 26.43 (17) | C5B—C6B—C7B—N2B | 23.45 (18) |
C1A—C6A—C7A—N2A | −151.66 (13) | C1B—C6B—C7B—N2B | −156.02 (12) |
C1A—N3A—C8A—O2A | −2.2 (2) | C1B—N3B—C8B—O2B | 4.6 (2) |
C1A—N3A—C8A—C9A | 177.71 (13) | C1B—N3B—C8B—C9B | −174.30 (13) |
Cg1 and Cg2 are the centroids of the C1A–C6A and C1B–C6B benzene rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3A—H3NA···N1A | 0.883 (19) | 2.048 (19) | 2.7463 (18) | 135.2 (15) |
N3B—H3NB···N1B | 0.86 (2) | 1.963 (19) | 2.6798 (17) | 139.7 (17) |
N2B—H1NB···O2Bi | 0.88 (2) | 2.10 (2) | 2.9725 (17) | 173.0 (17) |
N2A—H2NA···O2Aii | 0.87 (3) | 2.53 (2) | 3.3004 (17) | 149.0 (17) |
N2A—H2NA···N2Biii | 0.87 (3) | 2.54 (2) | 3.2522 (18) | 139.6 (17) |
N2B—H2NB···O2Aiv | 0.903 (19) | 2.12 (2) | 2.8900 (17) | 142.1 (16) |
O1A—H1OA···O1B | 0.933 (19) | 1.844 (19) | 2.7733 (15) | 173.9 (18) |
O1B—H1OB···N1Av | 0.951 (18) | 1.809 (18) | 2.7597 (15) | 177.0 (17) |
C2A—H2AA···O2A | 0.95 | 2.22 | 2.8556 (17) | 123 |
C5A—H5AA···O2Bvi | 0.95 | 2.55 | 3.2773 (17) | 133 |
C9A—H9AC···N1B | 0.98 | 2.56 | 3.499 (2) | 160 |
C4A—H4AA···Cg2ii | 0.95 | 2.95 | 3.7524 (16) | 143 |
C3B—H3BA···Cg1vii | 0.95 | 2.88 | 3.6645 (17) | 141 |
Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+1, −y+1, −z+1; (iii) −x+2, −y+1, −z+1; (iv) x+1, y, z; (v) −x+2, −y, −z+1; (vi) x, y+1, z−1; (vii) x, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C9H11N3O2 |
Mr | 193.21 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 8.7813 (12), 9.5432 (13), 11.9770 (15) |
α, β, γ (°) | 80.722 (2), 78.531 (2), 70.181 (2) |
V (Å3) | 920.6 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.35 × 0.20 × 0.05 |
Data collection | |
Diffractometer | Bruker APEX DUO CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.965, 0.995 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12849, 4680, 3815 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.674 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.116, 1.07 |
No. of reflections | 4680 |
No. of parameters | 287 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.26 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 and Cg2 are the centroids of the C1A–C6A and C1B–C6B benzene rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3A—H3NA···N1A | 0.883 (19) | 2.048 (19) | 2.7463 (18) | 135.2 (15) |
N3B—H3NB···N1B | 0.86 (2) | 1.963 (19) | 2.6798 (17) | 139.7 (17) |
N2B—H1NB···O2Bi | 0.88 (2) | 2.10 (2) | 2.9725 (17) | 173.0 (17) |
N2A—H2NA···O2Aii | 0.87 (3) | 2.53 (2) | 3.3004 (17) | 149.0 (17) |
N2A—H2NA···N2Biii | 0.87 (3) | 2.54 (2) | 3.2522 (18) | 139.6 (17) |
N2B—H2NB···O2Aiv | 0.903 (19) | 2.12 (2) | 2.8900 (17) | 142.1 (16) |
O1A—H1OA···O1B | 0.933 (19) | 1.844 (19) | 2.7733 (15) | 173.9 (18) |
O1B—H1OB···N1Av | 0.951 (18) | 1.809 (18) | 2.7597 (15) | 177.0 (17) |
C2A—H2AA···O2A | 0.95 | 2.22 | 2.8556 (17) | 123 |
C5A—H5AA···O2Bvi | 0.95 | 2.55 | 3.2773 (17) | 133 |
C9A—H9AC···N1B | 0.98 | 2.56 | 3.499 (2) | 160 |
C4A—H4AA···Cg2ii | 0.95 | 2.95 | 3.7524 (16) | 143 |
C3B—H3BA···Cg1vii | 0.95 | 2.88 | 3.6645 (17) | 141 |
Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+1, −y+1, −z+1; (iii) −x+2, −y+1, −z+1; (iv) x+1, y, z; (v) −x+2, −y, −z+1; (vi) x, y+1, z−1; (vii) x, y, z+1. |
Acknowledgements
HKF and CWO thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/CIPPM813040). CWO also thanks the Malaysian Goverment and USM for the award of the post of Research Officer under Research University Grant No. 1001/PFIZIK/811160.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Amidoximes are bi-functional molecules exhibiting a rich and diverse chemistry and provides the shortest way to reach certain heterocycles, such as 1,2,4-oxadiazoles (Clapp, 1976, 1984; Jochims, 1996). They are also considered interesting molecules in view of their biological applications (Fylaktakidou et al., 2008). Their ability to release NO or nitrites in vitro and in vivo experiments has recently attracted attention (Mansuy et al., 2004; Kontogiorgis et al., 2002). The discovery that nitric oxide (NO) acts as an important mediator of smooth muscle relaxation has led us to the preparation and testing of a wide variety of compounds with the aim of finding suitable new NO-donors. In the process, the title compound, (Z)-N-(2-(N'-hydroxycarbamimidoyl) phenyl)acetamide (Wang et al., 2002) was prepared.
The title compound consist of two crystallographically independent molecules (A and B) as shown in Fig. 1. The molecules exist in Z configuration with respect to the C7A ═N1A and C7B ═N1B double bonds. The intramolecular N3—H3···N1 hydrogen bonds (Table 1) form S(6) ring motifs (Bernstein et al., 1995) in both molecules. Molecule A is stabilized by an additional intramolecular C2A—H2AA···O2A hydrogen bond (Table 1) which also generates an S(6) ring motif (Bernstein et al., 1995). The bond lengths (Allen et al., 1987) and angles are within normal ranges.
In the crystal structure (Fig. 2), the molecules are linked via N2B—H1NB···O2B, N2A—H2NA···O2A, N2A—H2NA···N2B, N2B—H2NB···O2A, O1A—H1OA···O1B, O1B—H1OB···N1A, C5A—H5AA···O2B and C9A—H9AC···N1B hydrogen bonds (Table 1) into a three dimensional network The crystal is further consolidated by C4A—H4A···Cg2 and C3B—H3BA···Cg1 interactions (Table 1), where Cg1 and Cg2 are the centroids of benzene rings (C1A–C6A and C1B–C6B), respectively.